mRNA_S-firma_F_contig10808.1085.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10808.1085.1
Unique NamemRNA_S-firma_F_contig10808.1085.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Match: UPI001F403F1A (methyltransferase domain-containing protein n=1 Tax=unclassified Microbacterium TaxID=2609290 RepID=UPI001F403F1A)

HSP 1 Score: 63.5 bits (153), Expect = 5.230e-9
Identity = 47/119 (39.50%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   25 GSVVDTAAGSGHHLEALLAKLPGRVFVGRDLSPEMIAVARERLXXXXAVVQADMTDMTGTESSSCAVLLNTFALHHVSADTAKAAIAEWARCLGPGGVLYLATWEGVSGTPIEGVENAY 381
            G+V+D A G+G  L AL ++LPG   VG D+SP M+AVARE        V+AD   +   ++S   V   T ALH +    A+ AI EW R L PGG    AT+   S  P+   + A+
Sbjct:   85 GTVLDVATGTGLVLRALRSRLPGARMVGADISPGMLAVAREAFPGAE-FVEADAAALPLPDASVDLVTCVT-ALHLIP--DARGAIDEWLRVLSPGGRAVTATFMAESRRPVRAEDQAF 199          
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Match: UPI001BA6C098 (class I SAM-dependent methyltransferase n=1 Tax=Paenarthrobacter sp. GOM3 TaxID=2782567 RepID=UPI001BA6C098)

HSP 1 Score: 59.7 bits (143), Expect = 8.550e-8
Identity = 49/162 (30.25%), Postives = 72/162 (44.44%), Query Frame = 1
Query:   22 EGSVVDTAAGSGHHLEALLAKLPGRVFVGRDLSPEMIAVARERLXXXXAVVQADMTDMTGTESSSCAVLLNTFALHHVSADTAKAAIAEWARCLGPGGVLYLATWEGVSGTPI-EGVENAYLWSAADVTSWIEAAGLRVDHQRQAMEAEFEMNTLYVLATKT 504
            +G V+D   G G     L A+  G    G D+ PE IA AR+         +    +       S A +L  ++L H S D   A +AE++RCL PGG L L  +EG +       V  AY W  A++   +E AG  V       + E   +   ++AT+T
Sbjct:   43 DGKVIDAGCGPGQWTSFLHAQ--GFEAEGVDIVPEFIASARQH--HPNTAFRVGSLEQLQVPDQSLAGILAWYSLIHTSPDDIAAVLAEFSRCLAPGGSLLLGFFEGEAVEEFAHAVTPAYFWPVAEMGKCLERAGFLVTSSNSRKDPETRPHAA-IIATRT 199          
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Match: A0A852RH42_9MICO (SAM-dependent methyltransferase n=1 Tax=Leucobacter aridicollis TaxID=283878 RepID=A0A852RH42_9MICO)

HSP 1 Score: 57.4 bits (137), Expect = 6.510e-7
Identity = 47/141 (33.33%), Postives = 61/141 (43.26%), Query Frame = 1
Query:   16 PAEGSVVDTAAGSGHHLEALLAKLPGRVFVGRDLSPEMIAVARERLXXXXAVVQADMTDMTGTESSSCAVLLNTFALHHVSADTAKAAIAEWARCLGPGGVLYLATWEGVSGTPI-EGVENAYLWSAADVTSWIEAAGLRV 435
            P  G V+D   G GH    L     G   VG D+ PE IA ARER        +    D       + A +L  ++L H         +AE+ARCL PGG L +  + G         V  AYLW  A ++  +E AG RV
Sbjct:   55 PLAGPVLDAGCGPGHWTAYLHGI--GTQVVGLDMVPEFIASARERFPRVS--FRVGTLDSLPYAQGALAGILAWYSLIHTPPARVPQVLAEFARCLEPGGSLLVGCFAGPQVRAFGHAVTTAYLWPPAQLSRALEGAGFRV 191          
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Match: UPI0006A7EC77 (class I SAM-dependent methyltransferase n=1 Tax=Leucobacter celer TaxID=668625 RepID=UPI0006A7EC77)

HSP 1 Score: 55.8 bits (133), Expect = 1.990e-6
Identity = 43/142 (30.28%), Postives = 64/142 (45.07%), Query Frame = 1
Query:   25 GSVVDTAAGSGHHLEALLAKLPGRVFVGRDLSPEMIAVARERLXXXXAVVQADMTDMTGTESSSCAVLLNTFALHHVSADTAKAAIAEWARCLGPGGVLYLATWEGVSGTPIE-GVENAYLWSAADVTSWIEAAGLRVDHQR 447
            G ++D   G G   + L  +  G    G D +   IA A  R     A  +    +  G    S   +L  F+L H+  +T    +AE+ARC+ PGG L +  ++G +G P +  V  AY WSA  +   +E AG  V   R
Sbjct:   44 GRIIDVGCGPGQWTDFL--RREGIDIEGVDPTAAFIADAARRYPR--ARYRVGRAERLGVRDESLGGVLAWFSLIHMPPETIDEPLAEFARCIAPGGGLLIGFFDGSAGEPFDHAVTTAYTWSAEALAERLEHAGFTVTEAR 181          
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Match: A0A229HP52_9MICC (Class I SAM-dependent methyltransferase n=2 Tax=Micrococcus sp. KBS0714 TaxID=1179670 RepID=A0A229HP52_9MICC)

HSP 1 Score: 55.1 bits (131), Expect = 2.490e-6
Identity = 46/113 (40.71%), Postives = 56/113 (49.56%), Query Frame = 1
Query:   25 GSVVDTAAGSGHHLEALLAKLPGRVFVGRDLSPEMIAVARERLXXXX--AVVQADMTDMTGTESSSCAVLLNTFALHHVSADTAKAAIAEWARCLGPGGVLY---LATWEGVS 348
            G V++  AGSG    ALL + PG      D+   M+A AR R        V QAD T +   ESS   V+L+   LHHV     KAA+AE AR L PGG+L    L  W   S
Sbjct:   58 GDVLELGAGSGQMAAALLQRSPGMRLTLTDIDERMVATARRRFPTSPRLTVQQADSTALPFAESSFD-VVLSFLMLHHVV--NWKAAVAEAARVLKPGGMLIGYDLTAWSSPS 167          
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Match: A0A5E4U2P3_9BURK (Trans-aconitate 2-methyltransferase n=1 Tax=Pandoraea terrae TaxID=1537710 RepID=A0A5E4U2P3_9BURK)

HSP 1 Score: 56.2 bits (134), Expect = 2.520e-6
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   16 PAEGSVVDTAAGSGHHLEALLAKLPGRVFVGRDLSPEMIAVARERLXXXXAVVQADMTDMTGTESSSCAVLLNTFALHHVSADTAKAAIAEWARCLGPGGVLYLAT 333
            PA   ++D   G+G  L  L  K PG   VG D+SP MIA AR RL      ++     MT  E++S  ++++  ALH  S D  +A + + AR L PGGVL +AT
Sbjct:   36 PAPMRILDACCGTGSLLATLGDKAPGAHRVGIDVSPHMIAEARNRLYGEDCDLRVGDI-MTHDEAASYDLVISNAALHWFS-DNVEATVKQLARLLVPGGVLAVAT 139          
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Match: UPI001F3D168E (class I SAM-dependent methyltransferase n=1 Tax=Paenarthrobacter sp. AR 02 TaxID=2899821 RepID=UPI001F3D168E)

HSP 1 Score: 53.9 bits (128), Expect = 1.090e-5
Identity = 46/143 (32.17%), Postives = 63/143 (44.06%), Query Frame = 1
Query:   22 EGSVVDTAAGSG---HHLEALLAKLPGRVFVGRDLSPEMIAVARERLXXXXAVVQADMTDMTGTESSSCAVLLNTFALHHVSADTAKAAIAEWARCLGPGGVLYLATWEG--VSGTPIEGVENAYLWSAADVTSWIEAAGLRV 435
            +G V+D   G G   H L AL     G      D+ PE I  AR+         +    +       S A +L  ++L H S D     +AE+ARCL PGG L +A +EG  V   P   V  AY W  A++   ++ AG  V
Sbjct:   43 DGKVIDAGCGPGQWTHFLHALRVDAEGV-----DIVPEFIESARQHYPN--TAFRVGSLEQLQVPDQSLAGILAWYSLIHTSPDDIPTVLAEFARCLAPGGSLLMAFFEGETVEEFP-HAVMPAYFWPVAEMGKCLDRAGFLV 177          
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Match: A0A132H812_MICLU (Putative S-adenosylmethionine-dependent methyltransferase n=5 Tax=Micrococcaceae TaxID=1268 RepID=A0A132H812_MICLU)

HSP 1 Score: 53.1 bits (126), Expect = 1.800e-5
Identity = 42/101 (41.58%), Postives = 52/101 (51.49%), Query Frame = 1
Query:   25 GSVVDTAAGSGHHLEALLAKLPGRVFVGRDLSPEMIAVARERLXXXX--AVVQADMTDMTGTESSSCAVLLNTFALHHVSADTAKAAIAEWARCLGPGGVL 321
            G V++  AGSG    ALL + PG      D+   M+A  R R        V QAD T +   ESS   V+L+   LHHV     KAA+AE AR L PGG+L
Sbjct:   37 GDVLELGAGSGEMAAALLQRSPGMHLTLTDIDERMVATTRRRFPTSPRPTVQQADSTALPFAESSFD-VVLSFLMLHHVV--NWKAAVAEAARVLKPGGML 134          
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Match: A0A2S0KG79_9ACTN (SAM-dependent methyltransferase n=1 Tax=Gordonia iterans TaxID=1004901 RepID=A0A2S0KG79_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 2.170e-5
Identity = 47/146 (32.19%), Postives = 64/146 (43.84%), Query Frame = 1
Query:   25 GSVVDTAAGSGH---HLEALLAKLPGRVFVGRDLSPEMIAVAR---ERLXXXXAVVQADMTDMTGTESSSCAVLLNTFALHHVSADTAKAAIAEWARCLGPGGVLYLATWEGVSGTPIE-GVENAYLWSAADVTSWIEAAGLRVDH 441
            G V+D   G G    HL  L     G    G D +PE IA+AR          A  +       G E  S   +L+ ++L H+       A+AE+ARCL PGG L L  + G +    +  V  AY W    +   ++AAGL V H
Sbjct:   21 GPVLDVGCGPGQWTAHLAGL-----GFDVNGIDPTPEFIAIARASDSAAPDCTARYRLGSAHDLGVEDGSLGGILSWYSLIHLEPGLISTALAEFARCLRPGGGLALGFFTGETVASFDHAVATAYRWPVDLLVEAVDAAGLTVTH 161          
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Match: A3QFI8_SHELP (Methyltransferase type 11 n=8 Tax=Shewanella TaxID=22 RepID=A3QFI8_SHELP)

HSP 1 Score: 53.1 bits (126), Expect = 2.340e-5
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   22 EGSVVDTAAGSGHHLEALLAKLPGRVFVGRDLSPEMIAVARERLXXXXAVVQADMTDMT--GTESSSCAVLLNTFALHHVSADTAKAAIAEWARCLGPGGVLYLATWEG 342
            +  V++ A G G+    LLA+ P   ++G DL+P+M+++ARE         Q ++ D    G+ +     ++  F L ++S D AK  I   AR L  GG+LYL+T EG
Sbjct:   55 QDKVLELACGPGNIARYLLARRPQLDYLGTDLAPQMVSLAREN----NPTAQFEVMDCLAIGSLTEMFDAIVCGFCLPYLSRDEAKVLILAMARRLNAGGLLYLSTMEG 159          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10808.1085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
UPI001F403F1A5.230e-939.50methyltransferase domain-containing protein n=1 Ta... [more]
UPI001BA6C0988.550e-830.25class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A852RH42_9MICO6.510e-733.33SAM-dependent methyltransferase n=1 Tax=Leucobacte... [more]
UPI0006A7EC771.990e-630.28class I SAM-dependent methyltransferase n=1 Tax=Le... [more]
A0A229HP52_9MICC2.490e-640.71Class I SAM-dependent methyltransferase n=2 Tax=Mi... [more]
A0A5E4U2P3_9BURK2.520e-639.62Trans-aconitate 2-methyltransferase n=1 Tax=Pandor... [more]
UPI001F3D168E1.090e-532.17class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A132H812_MICLU1.800e-541.58Putative S-adenosylmethionine-dependent methyltran... [more]
A0A2S0KG79_9ACTN2.170e-532.19SAM-dependent methyltransferase n=1 Tax=Gordonia i... [more]
A3QFI8_SHELP2.340e-533.94Methyltransferase type 11 n=8 Tax=Shewanella TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10808contigS-firma_F_contig10808:2024..2539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog714083.JH370377_gene2158
PFAMsMethyltransf_25
Max annot lvl201174|Actinobacteria
Evalue7.11e-09
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,2GP9N@201174|Actinobacteria,4FP39@85023|Microbacteriaceae
DescriptionMethyltransferase domain
COG categoryQ
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.7833147-CDS-S-firma_F_contig10808:2023..25391622815623.7833147-CDS-S-firma_F_contig10808:2023..2539Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10808 2024..2539 -
1696949461.2033825-CDS-S-firma_F_contig10808:2023..25391696949461.2033825-CDS-S-firma_F_contig10808:2023..2539Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10808 2024..2539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10808.1085.1prot_S-firma_F_contig10808.1085.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10808 2024..2539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10808.1085.1

>prot_S-firma_F_contig10808.1085.1 ID=prot_S-firma_F_contig10808.1085.1|Name=mRNA_S-firma_F_contig10808.1085.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=172bp
LVGLAPAEGSVVDTAAGSGHHLEALLAKLPGRVFVGRDLSPEMIAVARER
LPESVAVVQADMTDMTGTESSSCAVLLNTFALHHVSADTAKAAIAEWARC
LGPGGVLYLATWEGVSGTPIEGVENAYLWSAADVTSWIEAAGLRVDHQRQ
AMEAEFEMNTLYVLATKTAAT*
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mRNA from alignment at S-firma_F_contig10808:2024..2539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10808.1085.1 ID=mRNA_S-firma_F_contig10808.1085.1|Name=mRNA_S-firma_F_contig10808.1085.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=516bp|location=Sequence derived from alignment at S-firma_F_contig10808:2024..2539- (Sphaerotrichia firma ET2_F female)
CTTGTGGGCCTGGCACCCGCGGAGGGGTCCGTCGTGGACACTGCTGCGGG CAGCGGCCACCACCTTGAGGCCCTCCTCGCCAAGCTCCCCGGCCGGGTTT TTGTCGGACGCGACCTGTCCCCGGAGATGATTGCTGTTGCCCGGGAGAGG CTGCCAGAGTCGGTGGCGGTTGTGCAGGCCGACATGACGGACATGACGGG CACCGAGAGCAGCAGCTGCGCCGTCCTGCTCAACACGTTTGCGTTGCACC ACGTTTCCGCAGACACTGCAAAGGCGGCGATTGCGGAGTGGGCGCGCTGC TTGGGGCCTGGAGGCGTGCTGTACCTCGCCACGTGGGAGGGCGTGAGCGG GACCCCGATTGAGGGCGTGGAAAACGCGTACCTGTGGTCTGCTGCAGACG TCACGTCTTGGATTGAGGCGGCTGGCTTGCGCGTGGATCACCAGCGGCAG GCCATGGAGGCCGAGTTCGAGATGAACACGTTGTATGTCTTGGCGACCAA AACCGCTGCAACGTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10808:2024..2539-

>mRNA_S-firma_F_contig10808.1085.1 ID=mRNA_S-firma_F_contig10808.1085.1|Name=mRNA_S-firma_F_contig10808.1085.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1032bp|location=Sequence derived from alignment at S-firma_F_contig10808:2024..2539- (Sphaerotrichia firma ET2_F female)
CTTGTGGGCCTGGCACCCGCGGAGGGGTCCGTCGTGGACACTGCTGCGGG
CAGCGGCCACCACCTTGAGGCCCTCCTCGCCAAGCTCCCCGGCCGGGTTT
TTGTCGGACGCGACCTGTCCCCGGAGATGATTGCTGTTGCCCGGGAGAGG
CTGCCAGAGTCGGTGGCGGTTGTGCAGGCCGACATGACGGACATGACGGG
CACCGAGAGCAGCAGCTGCGCCGTCCTGCTCAACACGTTTGCGTTGCACC
ACGTTTCCGCAGACACTGCAAAGGCGGCGATTGCGGAGTGGGCGCGCTGC
TTGGGGCCTGGAGGCGTGCTGTACCTCGCCACGTGGGAGGGCGTGAGCGG
GACCCCGATTGAGGGCGTGGAAAACGCGTACCTGTGGTCTGCTGCAGACG
TCACGTCTTGGATTGAGGCGGCTGGCTTGCGCGTGGATCACCAGCGGCAG
GCCATGGAGGCCGAGTTCGAGATGAACACGTTGTATGTCTTGGCGACCAA
AACCGCTGCAACGTAACTTGTGGGCCTGGCACCCGCGGAGGGGTCCGTCG
TGGACACTGCTGCGGGCAGCGGCCACCACCTTGAGGCCCTCCTCGCCAAG
CTCCCCGGCCGGGTTTTTGTCGGACGCGACCTGTCCCCGGAGATGATTGC
TGTTGCCCGGGAGAGGCTGCCAGAGTCGGTGGCGGTTGTGCAGGCCGACA
TGACGGACATGACGGGCACCGAGAGCAGCAGCTGCGCCGTCCTGCTCAAC
ACGTTTGCGTTGCACCACGTTTCCGCAGACACTGCAAAGGCGGCGATTGC
GGAGTGGGCGCGCTGCTTGGGGCCTGGAGGCGTGCTGTACCTCGCCACGT
GGGAGGGCGTGAGCGGGACCCCGATTGAGGGCGTGGAAAACGCGTACCTG
TGGTCTGCTGCAGACGTCACGTCTTGGATTGAGGCGGCTGGCTTGCGCGT
GGATCACCAGCGGCAGGCCATGGAGGCCGAGTTCGAGATGAACACGTTGT
ATGTCTTGGCGACCAAAACCGCTGCAACGTAA
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