mRNA_S-firma_F_contig10808.1083.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10808.1083.1
Unique NamemRNA_S-firma_F_contig10808.1083.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Match: A0A7J6VQ51_THATH (Abc transporter e family member n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VQ51_THATH)

HSP 1 Score: 355 bits (910), Expect = 1.560e-119
Identity = 175/226 (77.43%), Postives = 192/226 (84.96%), Query Frame = 1 
Query:    1 ENGTGKTTFIRMLAGLLKADADPTTGEIPECDGFSVSYKPQKIAPSFEGTVRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALCLCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFIMATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNFRPRINKRGSIKDMEQKRAGTFFFLSD 678
            ENGTGKTTFIRMLAGLLK D      EIPE   F+VSYKPQKI+P F+ TVR LLH KIRD Y+HPQF +DV KPL+IE L+DQEV  LSGGELQRVALCLCLGKPAD+YLIDEPSAYLDSEQRIVASKVIKRFILHAKKT F+VEHDFIMATYLAD VIVYEG P ++CTA APQSLLTGMN FL  L+ITFRRDPTN+RPRINK  S KD EQK AG++++L D
Sbjct:  187 ENGTGKTTFIRMLAGLLKPDLVEGDAEIPE---FNVSYKPQKISPKFQSTVRHLLHQKIRDMYMHPQFMSDVMKPLQIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGNPSIDCTANAPQSLLTGMNLFLSHLDITFRRDPTNYRPRINKLESTKDREQKNAGSYYYLDD 409
[Close]
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Match: A0A8K0MWI4_COCNU (Putative ABC transporter E family member 2 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0MWI4_COCNU)

HSP 1 Score: 355 bits (910), Expect = 1.610e-119
Identity = 176/227 (77.53%), Postives = 196/227 (86.34%), Query Frame = 1 
Query:    1 ENGTGKTTFIRMLAGLLKADA-DPTTGEIPECDGFSVSYKPQKIAPSFEGTVRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALCLCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFIMATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNFRPRINKRGSIKDMEQKRAGTFFFLSD 678
            ENGTGKTTFIRMLAGLL+ D  + T  EIPE   F VSYKPQKI+P FE TVR LLH KIRD+Y+HPQF TDV KPL+IE L+DQEV  LSGGELQRVALCLCLGKPAD+YLIDEPSAYLDSEQRIVASKVIKRFILHAKKT F+VEHDFIMATYLAD VIVYEG+P V+CTA APQSL++GMN+FL  L+ITFRRDPTN+RPRINK  S KD EQK AG++++L D
Sbjct:  187 ENGTGKTTFIRMLAGLLRPDVVEGTDVEIPE---FHVSYKPQKISPKFESTVRHLLHQKIRDSYMHPQFTTDVMKPLQIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADKVIVYEGQPSVDCTANAPQSLVSGMNRFLSHLDITFRRDPTNYRPRINKLDSTKDREQKAAGSYYYLDD 410
[Close]
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Match: A0A7C8YCX0_OPUST (Adenosinetriphosphatase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YCX0_OPUST)

HSP 1 Score: 347 bits (890), Expect = 8.200e-119
Identity = 172/227 (75.77%), Postives = 195/227 (85.90%), Query Frame = 1 
Query:    1 ENGTGKTTFIRMLAGLLKADA-DPTTGEIPECDGFSVSYKPQKIAPSFEGTVRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALCLCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFIMATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNFRPRINKRGSIKDMEQKRAGTFFFLSD 678
            ENGTGKTTFIRMLAGL+K D+ + +  EIPE   F+VSYKPQKI+P F+ TVR LLH KIRD+Y+HPQF +DV KPL+IE L+DQEV  LSGGELQRVAL LCLGKPAD+YLIDEPSAYLDSEQR+VASKVIKRFILHAKKT F+VEHDFIMATYLAD VIVYEG P ++CTA +PQSLLTGMN FL  L+ITFRRDPTN+RPRINK  S KD EQK AGT+++L D
Sbjct:   28 ENGTGKTTFIRMLAGLVKPDSIEGSDVEIPE---FNVSYKPQKISPKFQSTVRHLLHQKIRDSYMHPQFVSDVMKPLQIEQLMDQEVVNLSGGELQRVALALCLGKPADIYLIDEPSAYLDSEQRVVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGTPSIDCTANSPQSLLTGMNLFLSHLDITFRRDPTNYRPRINKLESTKDREQKTAGTYYYLDD 251
[Close]
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Match: UPI0002C34355 (ABC transporter E family member 2 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C34355)

HSP 1 Score: 356 bits (913), Expect = 2.070e-117
Identity = 175/226 (77.43%), Postives = 193/226 (85.40%), Query Frame = 1 
Query:    1 ENGTGKTTFIRMLAGLLKADADPTTGEIPECDGFSVSYKPQKIAPSFEGTVRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALCLCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFIMATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNFRPRINKRGSIKDMEQKRAGTFFFLSD 678
            ENGTGKTTFIRMLAGLLK D   +  EIPE   F+VSYKPQKI+P F+ TVR LLH+KIRD+Y HPQF +DV KPL IE L+DQEV  LSGGELQRVALCLCLGKPAD+YLIDEPSAYLDSEQRIVASKVIKRFILHAKKT F+VEHDFIMATYLAD VIVYEG+P ++CTA  PQSLLTGMN FL  L+ITFRRDPTNFRPRINK  S KD EQK AG++++L D
Sbjct:  382 ENGTGKTTFIRMLAGLLKPDESDSEVEIPE---FNVSYKPQKISPKFQNTVRHLLHSKIRDSYTHPQFMSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGKPSIDCTANCPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKMNSTKDREQKNAGSYYYLDD 604
[Close]
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Match: A0A2P2LVM3_RHIMU (Rnase l inhibitor n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LVM3_RHIMU)

HSP 1 Score: 350 bits (897), Expect = 8.910e-117
Identity = 174/225 (77.33%), Postives = 194/225 (86.22%), Query Frame = 1 
Query:    1 ENGTGKTTFIRMLAGLLKAD-ADPTTGEIPECDGFSVSYKPQKIAPSFEGTVRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALCLCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFIMATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNFRPRINKRGSIKDMEQKRAGTFFFL 672
            ENGTGKTTFIRMLAGL+K D  + + GEIPE   FSVSYKPQ+I+P F  TVR LLH +IRD+YLHPQF +DV KPL IE L+DQEV  LSGGELQRVALCLCLGKPAD+YLIDEPSAYLDSEQRIVASKVIKRFILHAKKT F+VEHDFIMATYLAD V+VYEG+P VECTA +PQSLLTGMN FL  L+ITFRRDPTN+RPRINK  S KD EQK AG++++L
Sbjct:  243 ENGTGKTTFIRMLAGLVKPDIVEGSDGEIPE---FSVSYKPQRISPKFPSTVRNLLHQRIRDSYLHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVVVYEGKPSVECTANSPQSLLTGMNLFLSHLDITFRRDPTNYRPRINKLDSTKDREQKAAGSYYYL 464
[Close]
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Match: UPI000D2F3D64 (ABC transporter E family member 2 isoform X2 n=1 Tax=Medicago truncatula TaxID=3880 RepID=UPI000D2F3D64)

HSP 1 Score: 343 bits (879), Expect = 9.210e-117
Identity = 170/226 (75.22%), Postives = 188/226 (83.19%), Query Frame = 1 
Query:    1 ENGTGKTTFIRMLAGLLKADADPTTGEIPECDGFSVSYKPQKIAPSFEGTVRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALCLCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFIMATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNFRPRINKRGSIKDMEQKRAGTFFFLSD 678
            ENGTGKTTFIRMLAGLLK D      ++ E   F+VSYKPQKI+P  +  VR +LH KIRDAY HPQF +DV KPL IE L+DQEV+ LSGGELQRVALCLCLGKPAD+YLIDEPSAYLDSEQRIVA+KVIKRFILHAKKT FIVEHDFIMATYLAD VIVYEG+P + CTA  PQSLLTGMN FL  L+ITFRRDPTNFRPRINK  S KD EQK AG++++L D
Sbjct:   52 ENGTGKTTFIRMLAGLLKPDTTEGVSDV-EMPEFNVSYKPQKISPKSQLPVRYMLHQKIRDAYTHPQFISDVMKPLLIEQLMDQEVQNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFIVEHDFIMATYLADKVIVYEGQPSINCTANCPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLESTKDREQKNAGSYYYLDD 276
[Close]
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Match: A0A5J5B835_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5B835_9ASTE)

HSP 1 Score: 353 bits (907), Expect = 1.700e-116
Identity = 177/227 (77.97%), Postives = 195/227 (85.90%), Query Frame = 1 
Query:    1 ENGTGKTTFIRMLAGLLKADA-DPTTGEIPECDGFSVSYKPQKIAPSFEGTVRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALCLCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFIMATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNFRPRINKRGSIKDMEQKRAGTFFFLSD 678
            ENGTGKTTFIRMLAGLLK D  + +  EIPE   F+VSYKPQKI+P F+  VRLLLH KIRD+Y+HPQF +DV KPL IE L+DQEV  LSGGELQRVALCLCLGKPAD+YLIDEPSAYLDSEQRIVASKVIKRFILHAKKT F+VEHDFIMATYLAD VIVYEG+P V+CTA APQSLLTGMN FL  L+ITFRRDPTNFRPRINK  S KD EQK AG++++L D
Sbjct:  382 ENGTGKTTFIRMLAGLLKPDTIEGSDVEIPE---FNVSYKPQKISPRFQSNVRLLLHQKIRDSYMHPQFVSDVMKPLNIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGKPSVDCTANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLESTKDREQKAAGSYYYLDD 605
[Close]
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Match: U5DC51_AMBTC (Uncharacterized protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=U5DC51_AMBTC)

HSP 1 Score: 352 bits (904), Expect = 4.950e-116
Identity = 176/227 (77.53%), Postives = 196/227 (86.34%), Query Frame = 1 
Query:    1 ENGTGKTTFIRMLAGLLKADA-DPTTGEIPECDGFSVSYKPQKIAPSFEGTVRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALCLCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFIMATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNFRPRINKRGSIKDMEQKRAGTFFFLSD 678
            ENGTGKTTFIRMLAGLLK D  + +  EIPE   F+VSYKPQKI+P F+ TVR LLH KIRD+Y+HPQF +DV KPL+IE L+DQEV  LSGGELQRVALCLCLGKPAD+YLIDEPSAYLDSEQRIVASKVIKRFILHAKKT F+VEHDFIMATYLAD VIVYEG+P V+CTA APQSLLTGMN FL  L+ITFRRDPTN+RPRINK  S KD EQK AG++++L D
Sbjct:  383 ENGTGKTTFIRMLAGLLKPDVIEGSDVEIPE---FNVSYKPQKISPKFQHTVRHLLHQKIRDSYMHPQFMSDVMKPLQIEQLMDQEVINLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGKPSVDCTANAPQSLLTGMNLFLSHLDITFRRDPTNYRPRINKLDSTKDREQKSAGSYYYLDD 606
[Close]
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Match: UPI000D1C9E98 (ABC transporter E family member 2 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C9E98)

HSP 1 Score: 352 bits (903), Expect = 6.440e-116
Identity = 174/226 (76.99%), Postives = 193/226 (85.40%), Query Frame = 1 
Query:    1 ENGTGKTTFIRMLAGLLKADADPTTGEIPECDGFSVSYKPQKIAPSFEGTVRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALCLCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFIMATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNFRPRINKRGSIKDMEQKRAGTFFFLSD 678
            ENGTGKTTFIRMLAGLLK D    + +IPE   F+VSYKPQKI+P F+ TVR LLH+KIRD+Y+HPQF TDV KPL+IE L+DQ+V  LSGGELQRVALCLCLGKPAD+YLIDEPSAYLDSEQRIVASKVIKRFILHAKKT F+VEHDFIMATYLAD VIVYEG P V+C A  PQSLLTGMN FL  L+ITFRRDPTNFRPRINK  S KD EQK AG++++L D
Sbjct:  381 ENGTGKTTFIRMLAGLLKPDDVDDSVDIPE---FNVSYKPQKISPKFQSTVRHLLHSKIRDSYMHPQFNTDVMKPLQIEALMDQDVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGRPSVDCIANPPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDREQKAAGSYYYLDD 603
[Close]
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Match: A0A5C7HQ87_9ROSI (Uncharacterized protein n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A5C7HQ87_9ROSI)

HSP 1 Score: 352 bits (903), Expect = 6.810e-116
Identity = 175/227 (77.09%), Postives = 194/227 (85.46%), Query Frame = 1 
Query:    1 ENGTGKTTFIRMLAGLLKADA-DPTTGEIPECDGFSVSYKPQKIAPSFEGTVRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALCLCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFIMATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNFRPRINKRGSIKDMEQKRAGTFFFLSD 678
            ENGTGKTTFIRMLAGLLK D  + +  EIPE   F+VSYKPQKI+P FE +VR LLH KIRD+Y HPQF +DV KPL IE L+DQEVK LSGGELQRVALCLCLGKPAD+YLIDEPSAYLDSEQRIVASKVIKRFILHAKKT F+VEHDFIMATYLAD VIVYEG+P ++CTA  PQSLLTGMN FL  L+ITFRRDPTNFRPRINK  S KD +QK AG++++L D
Sbjct:  382 ENGTGKTTFIRMLAGLLKPDVIENSDVEIPE---FNVSYKPQKISPKFESSVRHLLHQKIRDSYTHPQFMSDVMKPLLIEQLMDQEVKNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGKPSIDCTANCPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDRDQKNAGSYYYLDD 605
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10808.1083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J6VQ51_THATH1.560e-11977.43Abc transporter e family member n=1 Tax=Thalictrum... [more]
A0A8K0MWI4_COCNU1.610e-11977.53Putative ABC transporter E family member 2 n=1 Tax... [more]
A0A7C8YCX0_OPUST8.200e-11975.77Adenosinetriphosphatase n=1 Tax=Opuntia streptacan... [more]
UPI0002C343552.070e-11777.43ABC transporter E family member 2 n=1 Tax=Fragaria... [more]
A0A2P2LVM3_RHIMU8.910e-11777.33Rnase l inhibitor n=1 Tax=Rhizophora mucronata Tax... [more]
UPI000D2F3D649.210e-11775.22ABC transporter E family member 2 isoform X2 n=1 T... [more]
A0A5J5B835_9ASTE1.700e-11677.97Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
U5DC51_AMBTC4.950e-11677.53Uncharacterized protein n=2 Tax=Amborella trichopo... [more]
UPI000D1C9E986.440e-11676.99ABC transporter E family member 2 n=2 Tax=Selagine... [more]
A0A5C7HQ87_9ROSI6.810e-11677.09Uncharacterized protein n=4 Tax=Mesangiospermae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10808contigS-firma_F_contig10808:3..796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog57918.XP_004291224.1
PFAMsABC_tran,Fer4,RLI
Max annot lvl35493|Streptophyta
KEGG koko:K06174
GOsGO:0000054,GO:0000166,GO:0003674,GO:0005215,GO:0005488,GO:0005506,GO:0005524,GO:0006403,GO:0006405,GO:0006412,GO:0006413,GO:0006415,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0017076,GO:0019538,GO:0022411,GO:0022613,GO:0030554,GO:0031503,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0033036,GO:0033750,GO:0034613,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043021,GO:0043024,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044877,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue3.39e-118
EggNOG OGsCOG1245@1|root,KOG0063@2759|Eukaryota,37NH5@33090|Viridiplantae,3GC1Z@35493|Streptophyta,4JGF8@91835|fabids
DescriptionABC transporter E family member
COG categoryA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size681
Cds size681
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10808.1083.1prot_S-firma_F_contig10808.1083.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10808 3..796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.636332-CDS-S-firma_F_contig10808:2..211622815623.636332-CDS-S-firma_F_contig10808:2..21Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10808 3..21 +
1696949461.138902-CDS-S-firma_F_contig10808:2..211696949461.138902-CDS-S-firma_F_contig10808:2..21Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10808 3..21 +
1622815623.6500351-CDS-S-firma_F_contig10808:73..5071622815623.6500351-CDS-S-firma_F_contig10808:73..507Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10808 74..507 +
1696949461.1524713-CDS-S-firma_F_contig10808:73..5071696949461.1524713-CDS-S-firma_F_contig10808:73..507Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10808 74..507 +
1622815623.664027-CDS-S-firma_F_contig10808:568..7961622815623.664027-CDS-S-firma_F_contig10808:568..796Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10808 569..796 +
1696949461.160609-CDS-S-firma_F_contig10808:568..7961696949461.160609-CDS-S-firma_F_contig10808:568..796Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10808 569..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10808.1083.1

>prot_S-firma_F_contig10808.1083.1 ID=prot_S-firma_F_contig10808.1083.1|Name=mRNA_S-firma_F_contig10808.1083.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=227bp
ENGTGKTTFIRMLAGLLKADADPTTGEIPECDGFSVSYKPQKIAPSFEGT
VRLLLHNKIRDAYLHPQFQTDVYKPLRIEPLIDQEVKQLSGGELQRVALC
LCLGKPADVYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTGFIVEHDFI
MATYLADNVIVYEGEPGVECTATAPQSLLTGMNKFLRQLEITFRRDPTNF
RPRINKRGSIKDMEQKRAGTFFFLSD*
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mRNA from alignment at S-firma_F_contig10808:3..796+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10808.1083.1 ID=mRNA_S-firma_F_contig10808.1083.1|Name=mRNA_S-firma_F_contig10808.1083.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=794bp|location=Sequence derived from alignment at S-firma_F_contig10808:3..796+ (Sphaerotrichia firma ET2_F female)
GAGAACGGGACGGGCAAGAGTGCGTTGTGGTTTGCCAGGGTGGTGTGTGT
TTGTTGTGTGACCCTCCCCAGCCACCTTCATCCGCATGCTGGCTGGCCTT
CTCAAGGCCGACGCCGACCCAACAACCGGCGAAATCCCAGAGTGCGACGG
CTTCTCCGTGTCGTACAAGCCGCAGAAGATTGCGCCCAGCTTTGAGGGCA
CCGTCCGCCTGCTGCTCCACAACAAGATCCGCGACGCGTACCTGCACCCC
CAGTTCCAGACAGACGTGTACAAGCCGCTCCGGATTGAGCCCCTGATTGA
CCAGGAGGTGAAGCAGCTCAGTGGTGGCGAGCTCCAGCGCGTGGCGCTGT
GCCTGTGCCTGGGCAAGCCTGCTGACGTGTACCTCATTGACGAGCCGTCC
GCGTACCTGGACTCGGAGCAGCGCATTGTGGCGTCCAAGGTCATCAAGCG
CTTCATTTTGCACGCCAAGAAGACGGGCTTCATTGTGGAGCACGACTTTA
TCATGGTGTGTCGTGTGGGTGGATGTGGGCGGCTTATGTGTGTTGTTGTG
CTGACGTGTGCACCAGGCCACGTACCTGGCCGACAACGTGATTGTGTACG
AGGGCGAGCCGGGCGTGGAGTGCACGGCCACGGCGCCGCAGTCCCTTCTC
ACCGGCATGAACAAGTTTTTGCGCCAGCTGGAGATTACATTCCGGCGTGA
CCCCACCAACTTCCGGCCACGCATCAACAAGCGCGGCTCCATCAAGGACA
TGGAGCAGAAGCGGGCTGGCACGTTCTTCTTCCTGTCGGACTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10808:3..796+

>mRNA_S-firma_F_contig10808.1083.1 ID=mRNA_S-firma_F_contig10808.1083.1|Name=mRNA_S-firma_F_contig10808.1083.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1362bp|location=Sequence derived from alignment at S-firma_F_contig10808:3..796+ (Sphaerotrichia firma ET2_F female)
GAGAACGGGACGGGCAAGAGAGAACGGGACGGGCAAGACCACCTTCATCC
GCATGCTGGCTGGCCTTCTCAAGGCCGACGCCGACCCAACAACCGGCGAA
ATCCCAGAGTGCGACGGCTTCTCCGTGTCGTACAAGCCGCAGAAGATTGC
GCCCAGCTTTGAGGGCACCGTCCGCCTGCTGCTCCACAACAAGATCCGCG
ACGCGTACCTGCACCCCCAGTTCCAGACAGACGTGTACAAGCCGCTCCGG
ATTGAGCCCCTGATTGACCAGGAGGTGAAGCAGCTCAGTGGTGGCGAGCT
CCAGCGCGTGGCGCTGTGCCTGTGCCTGGGCAAGCCTGCTGACGTGTACC
TCATTGACGAGCCGTCCGCGTACCTGGACTCGGAGCAGCGCATTGTGGCG
TCCAAGGTCATCAAGCGCTTCATTTTGCACGCCAAGAAGACGGGCTTCAT
TGTGGAGCACGACTTTATCATGCCACCTTCATCCGCATGCTGGCTGGCCT
TCTCAAGGCCGACGCCGACCCAACAACCGGCGAAATCCCAGAGTGCGACG
GCTTCTCCGTGTCGTACAAGCCGCAGAAGATTGCGCCCAGCTTTGAGGGC
ACCGTCCGCCTGCTGCTCCACAACAAGATCCGCGACGCGTACCTGCACCC
CCAGTTCCAGACAGACGTGTACAAGCCGCTCCGGATTGAGCCCCTGATTG
ACCAGGAGGTGAAGCAGCTCAGTGGTGGCGAGCTCCAGCGCGTGGCGCTG
TGCCTGTGCCTGGGCAAGCCTGCTGACGTGTACCTCATTGACGAGCCGTC
CGCGTACCTGGACTCGGAGCAGCGCATTGTGGCGTCCAAGGTCATCAAGC
GCTTCATTTTGCACGCCAAGAAGACGGGCTTCATTGTGGAGCACGACTTT
ATCATGGCCACGTACCTGGCCGACAACGTGATTGTGTACGAGGGCGAGCC
GGGCGTGGAGTGCACGGCCACGGCGCCGCAGTCCCTTCTCACCGGCATGA
ACAAGTTTTTGCGCCAGCTGGAGATTACATTCCGGCGTGACCCCACCAAC
TTCCGGCCACGCATCAACAAGCGCGGCTCCATCAAGGACATGGAGCAGAA
GCGGGCTGGCACGTTCTTCTTCCTGTCGGACTAAGCCACGTACCTGGCCG
ACAACGTGATTGTGTACGAGGGCGAGCCGGGCGTGGAGTGCACGGCCACG
GCGCCGCAGTCCCTTCTCACCGGCATGAACAAGTTTTTGCGCCAGCTGGA
GATTACATTCCGGCGTGACCCCACCAACTTCCGGCCACGCATCAACAAGC
GCGGCTCCATCAAGGACATGGAGCAGAAGCGGGCTGGCACGTTCTTCTTC
CTGTCGGACTAA
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