mRNA_S-firma_F_contig10798.1066.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10798.1066.1
Unique NamemRNA_S-firma_F_contig10798.1066.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Match: A0A1Y3QTV0_9BACT (Sulfatase domain-containing protein n=4 Tax=Alistipes TaxID=239759 RepID=A0A1Y3QTV0_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 1.670e-17
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   10 PTNAPYLAYHSCLSSQAGVNNSNWGNFTDIPNNMTYTQPMDAASAARLRTGYFAAVSYTDSNVGLLLDAVK--GLENDTIVALVGDHGWGLGEQNAWCKMMNYE 315
            P NAP +AYH         N+     +TDIP+ M    P+ A   A LR  Y+A VS+TD N+G +LD +K  GL +DT++ L GDHG+ LGE+  WCK   YE
Sbjct:  239 PENAPEIAYH---------NSEELRGYTDIPDLM----PLSAEQEAELRRAYYACVSFTDDNIGAILDRLKELGLYDDTLIVLWGDHGYHLGERELWCKSTVYE 329          
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Match: A0A517Q912_9PLAN (Choline-sulfatase n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517Q912_9PLAN)

HSP 1 Score: 85.9 bits (211), Expect = 2.290e-17
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   10 PTNAPYLAYHSCLSSQAGVNNSNWG---NFTDIPNNMTYTQPMDAASAARLRTGYFAAVSYTDSNVGLLLDAVKGLEND--TIVALVGDHGWGLGEQNAWCKMMNYENE 321
            P NAP  A            N+NWG   N++D+P     T         +LR GY+A VS+TD+N+G +LD +K LE D  TIV L GDHGW LGE N WCK  N+EN+
Sbjct:  259 PKNAPSYA------------NTNWGELRNYSDMPAKEDLTDEQQL----QLRHGYYACVSFTDANIGKVLDELKRLELDENTIVILWGDHGWKLGEHNGWCKHTNFEND 351          
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Match: A0A517WZE9_9PLAN (Arylsulfatase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WZE9_9PLAN)

HSP 1 Score: 82.8 bits (203), Expect = 2.810e-16
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   73 SNWG---NFTDIPNNMTYTQPMDAASAARLRTGYFAAVSYTDSNVGLLLDAVKGLEND--TIVALVGDHGWGLGEQNAWCKMMNYE 315
            +NWG   N++DIP     T+      A +LR GY+A+VS+TD+N+G +LD +K LE D  TIV L GDHGW LGE   WCK  N+E
Sbjct:  266 TNWGELRNYSDIPRKGDLTEEQ----ALKLRHGYYASVSFTDANIGKILDELKRLELDDNTIVILWGDHGWKLGEHAGWCKHTNFE 347          
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Match: A0A517WEZ1_9PLAN (Choline-sulfatase n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517WEZ1_9PLAN)

HSP 1 Score: 82.8 bits (203), Expect = 2.820e-16
Identity = 47/109 (43.12%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   10 PTNAPYLAYHSCLSSQAGVNNSNWG---NFTDIPNNMTYTQPMDAASAARLRTGYFAAVSYTDSNVGLLLDAVKGLEND--TIVALVGDHGWGLGEQNAWCKMMNYENE 321
            P NAP +A             +NWG   N++D+P     T         +LR GY+A VS+TD+N+G +LD ++ LE D  TIV L GDHGW LGE N WCK  N+EN+
Sbjct:  259 PKNAPKIAL------------TNWGELRNYSDMPAKGDLTDEQQL----QLRHGYYACVSFTDANIGKVLDELQRLELDENTIVILWGDHGWKLGEHNGWCKHTNFEND 351          
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Match: A0A4V0XQX2_9BACT (Iduronate-2-sulfatase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A4V0XQX2_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 5.550e-16
Identity = 45/109 (41.28%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   10 PTNAPYLAYHSCLSSQAGVNNSNWGNF---TDIP--NNMTYTQPMDAASAARLRTGYFAAVSYTDSNVGLLLDAVK--GLENDTIVALVGDHGWGLGEQNAWCKMMNYE 315
            P   P  A    +S+ A V +S+ G F   T++P  +      P+ AA A+++R GY+AAVSYTD+N+G+LLDA++  G+ ++T++ L GDHGW LG+   W K  N+E
Sbjct:  226 PAQIPDTASAFPVSAPAYVGDSDSGEFRAYTNVPPKDKALARTPLPAAFASQVRHGYYAAVSYTDANLGILLDALEKEGIADNTVIVLWGDHGWKLGDHEEWGKHTNFE 334          
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Match: A0A3C0DSK6_9BACT (Iduronate sulfatase n=2 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A3C0DSK6_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 7.010e-16
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   10 PTNAPYLAYHSCLSSQAGVNNSNWGNFTDIPNNMTYTQPMDAASAARLRTGYFAAVSYTDSNVGLLLDAVK--GLENDTIVALVGDHGWGLGEQNAWCKMMNYE 315
            P  AP +A H    ++          +TDIPNN     P+     A LR GY+AA SYTD+ VG +LD +K  GLE  T+++L  DHG+ LGEQN W K+ NY+
Sbjct:  233 PIGAPSIAGHDWREARG---------YTDIPNN----GPLSDNKIAELRHGYYAASSYTDAQVGRVLDELKRLGLEQTTVISLYSDHGFHLGEQNLWGKLTNYD 323          
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Match: A0A7W0MDC9_9PLAN (Sulfatase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0MDC9_9PLAN)

HSP 1 Score: 81.6 bits (200), Expect = 7.190e-16
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   73 SNWG---NFTDIPNNMTYTQPMDAASAARLRTGYFAAVSYTDSNVGLLLDAV--KGLENDTIVALVGDHGWGLGEQNAWCKMMNYE 315
            +NWG   N++DIP N      +DA  A  L  GY+AA+SYTD+ +G LLDA+  + L  +TIV + GDHGW LG+   WCK  NYE
Sbjct:  260 TNWGELRNYSDIPENGA----LDADKALELIHGYYAALSYTDAQIGKLLDALDEQNLAENTIVVVWGDHGWKLGDHGMWCKHTNYE 341          
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Match: A0A388PKJ9_9BACT (Iduronate 2-sulfatase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A388PKJ9_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 7.530e-16
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   61 GVNNSNWGNFTDIPNNMTYTQPMDAASAARLRTGYFAAVSYTDSNVGLLLDAVK--GLENDTIVALVGDHGWGLGEQNAWCKMMNYE 315
            G NNS   ++ DI N+      +D A+A RLR GY+AA+SY D+ VGL+LDA++  GL  +T++ L GDHGW LGE   W K  N+E
Sbjct:  251 GHNNSELKSYADIANDGA----IDEATARRLRHGYYAAISYMDAQVGLILDALEKEGLAENTVIVLWGDHGWQLGEHGLWHKHTNFE 333          
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Match: A0A388PQ00_9BACT (Iduronate 2-sulfatase n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A388PQ00_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 7.530e-16
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   61 GVNNSNWGNFTDIPNNMTYTQPMDAASAARLRTGYFAAVSYTDSNVGLLLDAVK--GLENDTIVALVGDHGWGLGEQNAWCKMMNYE 315
            G NNS   +++D+P+      P+D  +A  LR GY+AA+SY D+ VGL+LDA++  GL + T++ L GDHGW LGE   W K  N+E
Sbjct:  253 GHNNSELKSYSDVPD----VGPVDEQTARHLRHGYYAAISYMDAQVGLILDALEKEGLADHTVIVLWGDHGWQLGEHGLWHKHTNFE 335          
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Match: A0A2G4F718_9BACT (Iduronate sulfatase n=2 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2G4F718_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 7.530e-16
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   61 GVNNSNWGNFTDIPNNMTYTQPMDAASAARLRTGYFAAVSYTDSNVGLLLDAVK--GLENDTIVALVGDHGWGLGEQNAWCKMMNYE 315
            G NNS   ++ DI N+      +D A+A RLR GY+AA+SY D+ VGL+LDA++  GL ++T++ L GDHGW LGE   W K  N+E
Sbjct:  251 GHNNSELKSYADIANDGA----IDDATARRLRHGYYAAISYMDAQVGLMLDALEKEGLADNTVIVLWGDHGWQLGEHGLWHKHTNFE 333          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10798.1066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y3QTV0_9BACT1.670e-1744.23Sulfatase domain-containing protein n=4 Tax=Alisti... [more]
A0A517Q912_9PLAN2.290e-1744.95Choline-sulfatase n=5 Tax=Gimesia TaxID=1649453 Re... [more]
A0A517WZE9_9PLAN2.810e-1650.00Arylsulfatase n=2 Tax=Gimesia aquarii TaxID=252796... [more]
A0A517WEZ1_9PLAN2.820e-1643.12Choline-sulfatase n=6 Tax=Gimesia TaxID=1649453 Re... [more]
A0A4V0XQX2_9BACT5.550e-1641.28Iduronate-2-sulfatase n=1 Tax=Verrucomicrobia bact... [more]
A0A3C0DSK6_9BACT7.010e-1643.27Iduronate sulfatase n=2 Tax=Verrucomicrobiales bac... [more]
A0A7W0MDC9_9PLAN7.190e-1648.84Sulfatase n=1 Tax=Planctomycetaceae bacterium TaxI... [more]
A0A388PKJ9_9BACT7.530e-1648.28Iduronate 2-sulfatase n=1 Tax=Verrucomicrobia bact... [more]
A0A388PQ00_9BACT7.530e-1645.98Iduronate 2-sulfatase n=1 Tax=Opitutae bacterium T... [more]
A0A2G4F718_9BACT7.530e-1648.28Iduronate sulfatase n=2 Tax=Opitutae bacterium Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10798contigS-firma_F_contig10798:3640..4163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1033732.CAHI01000030_gene1171
PFAMsDUF4976,Sulfatase
Max annot lvl976|Bacteroidetes
Evalue2.73e-18
EggNOG OGsCOG3119@1|root,COG3119@2|Bacteria,4NFGI@976|Bacteroidetes,2FMUC@200643|Bacteroidia,22UXB@171550|Rikenellaceae
DescriptionType I phosphodiesterase / nucleotide pyrophosphatase
COG categoryP
Hectar predicted targeting categoryother localisation
Exons3
Model size323
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10798.1066.1prot_S-firma_F_contig10798.1066.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10798 3641..4163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.8858006-CDS-S-firma_F_contig10798:3640..36861622815621.8858006-CDS-S-firma_F_contig10798:3640..3686Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10798 3641..3686 -
1696949459.9464312-CDS-S-firma_F_contig10798:3640..36861696949459.9464312-CDS-S-firma_F_contig10798:3640..3686Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10798 3641..3686 -
1622815621.897056-CDS-S-firma_F_contig10798:3737..39511622815621.897056-CDS-S-firma_F_contig10798:3737..3951Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10798 3738..3951 -
1696949459.9628205-CDS-S-firma_F_contig10798:3737..39511696949459.9628205-CDS-S-firma_F_contig10798:3737..3951Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10798 3738..3951 -
1622815621.9101448-CDS-S-firma_F_contig10798:4102..41631622815621.9101448-CDS-S-firma_F_contig10798:4102..4163Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10798 4103..4163 -
1696949459.9756966-CDS-S-firma_F_contig10798:4102..41631696949459.9756966-CDS-S-firma_F_contig10798:4102..4163Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10798 4103..4163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10798.1066.1

>prot_S-firma_F_contig10798.1066.1 ID=prot_S-firma_F_contig10798.1066.1|Name=mRNA_S-firma_F_contig10798.1066.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=107bp
LDVPTNAPYLAYHSCLSSQAGVNNSNWGNFTDIPNNMTYTQPMDAASAAR
LRTGYFAAVSYTDSNVGLLLDAVKGLENDTIVALVGDHGWGLGEQNAWCK
MMNYENE
back to top

mRNA from alignment at S-firma_F_contig10798:3640..4163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10798.1066.1 ID=mRNA_S-firma_F_contig10798.1066.1|Name=mRNA_S-firma_F_contig10798.1066.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=524bp|location=Sequence derived from alignment at S-firma_F_contig10798:3640..4163- (Sphaerotrichia firma ET2_F female)
CTCGATGTGCCGACCAACGCGCCCTACCTAGCGTACCACTCCTGCCTATC AAGCCAAGCAGGTATGTCCCACGCAGCCAGTCGCGCACCGGCAGCCGCCA CCCCCACCGCATTTTCCGTCACCACGCCTTGACCGGCGCCGCCGGCTGCG TCTGGTGTGCCACACTCTGCTCTTGCGTTTTCGTTTGGCACCCCCCCTTC ACGCGCGTGCAGGCGTCAACAACTCCAACTGGGGCAACTTCACGGACATC CCCAACAACATGACGTACACACAGCCGATGGACGCCGCCTCTGCGGCACG CCTCCGCACAGGCTACTTCGCGGCCGTCTCGTACACTGACTCGAACGTTG GCCTGCTGCTTGACGCGGTCAAGGGGCTCGAAAACGACACCATCGTGGCC CTCGTCGGAGACCACGGCTGGGGGTTGTGAGTGCACGCGGGCTGCCCGAG AGCTGCTGTCCCTGACTGTCTGTGCAGGGGGGAGCAGAACGCGTGGTGCA AGATGATGAACTACGAGAACGAGG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10798:3640..4163-

>mRNA_S-firma_F_contig10798.1066.1 ID=mRNA_S-firma_F_contig10798.1066.1|Name=mRNA_S-firma_F_contig10798.1066.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=642bp|location=Sequence derived from alignment at S-firma_F_contig10798:3640..4163- (Sphaerotrichia firma ET2_F female)
CTCGATGTGCCGACCAACGCGCCCTACCTAGCGTACCACTCCTGCCTATC
AAGCCAAGCAGCTCGATGTGCCGACCAACGCGCCCTACCTAGCGTACCAC
TCCTGCCTATCAAGCCAAGCAGGCGTCAACAACTCCAACTGGGGCAACTT
CACGGACATCCCCAACAACATGACGTACACACAGCCGATGGACGCCGCCT
CTGCGGCACGCCTCCGCACAGGCTACTTCGCGGCCGTCTCGTACACTGAC
TCGAACGTTGGCCTGCTGCTTGACGCGGTCAAGGGGCTCGAAAACGACAC
CATCGTGGCCCTCGTCGGAGACCACGGCTGGGGGTTGCGTCAACAACTCC
AACTGGGGCAACTTCACGGACATCCCCAACAACATGACGTACACACAGCC
GATGGACGCCGCCTCTGCGGCACGCCTCCGCACAGGCTACTTCGCGGCCG
TCTCGTACACTGACTCGAACGTTGGCCTGCTGCTTGACGCGGTCAAGGGG
CTCGAAAACGACACCATCGTGGCCCTCGTCGGAGACCACGGCTGGGGGTT
GGGGGAGCAGAACGCGTGGTGCAAGATGATGAACTACGAGAACGAGGGGG
GAGCAGAACGCGTGGTGCAAGATGATGAACTACGAGAACGAG
back to top