mRNA_S-firma_F_contig10798.1065.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10798.1065.1
Unique NamemRNA_S-firma_F_contig10798.1065.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Match: A0A0L0D7R4_THETB (Endonuclease V family protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D7R4_THETB)

HSP 1 Score: 169 bits (428), Expect = 1.190e-49
Identity = 83/132 (62.88%), Postives = 107/132 (81.06%), Query Frame = 1
Query:    4 PQVILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDVVARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPATAVTLTRLLCNYRVPEPVRQADLVSREAVREYM 399
            P V+LVDGNG+LH+RGFGLAS LGVL DVPTIGIGK+F H+DG+S++D+VA +  VL  AGDA+ +VGESGRVWG+AFR++ ES K ++VS GHRV   +A+ + R    YR+PEPVRQADL+SR+ VR+ M
Sbjct:  160 PDVVLVDGNGVLHRRGFGLASHLGVLIDVPTIGIGKSFYHVDGVSQEDIVATSREVLTAAGDALLVVGESGRVWGAAFRAS-ESRKALYVSSGHRVGLLSALRIVRACARYRIPEPVRQADLLSRDYVRDVM 290          
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Match: A0A7S1GFA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GFA3_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.800e-49
Identity = 83/131 (63.36%), Postives = 102/131 (77.86%), Query Frame = 1
Query:    4 PQVILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDVVARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPATAVTLTRLLCNYRVPEPVRQADLVSREAVREY 396
            PQV+LVDG+G+LH RGFGLA  LGV+AD+PTIG+ K FLH+DGL+K D    AA     AGDA+DLVG+SGRVWG+A +ST  S  PIFVS GHR++ ATAV + R  C +RVPEPVRQADL SRE +R++
Sbjct:   33 PQVVLVDGSGVLHPRGFGLACHLGVVADIPTIGVCKKFLHVDGLTK-DRAKAAAAANDAAGDAVDLVGDSGRVWGAAVKSTAGSDNPIFVSVGHRIALATAVDVVRACCRFRVPEPVRQADLRSREWLRDH 162          
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Match: D8SHZ0_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SHZ0_SELML)

HSP 1 Score: 167 bits (423), Expect = 2.310e-49
Identity = 82/130 (63.08%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    1 FPQVILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDVVARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPATAVTLTRLLCNYRVPEPVRQADLVSREAVR 390
            FPQ+++VDGNG+LH RGFGLAS LGVLADVPT+GI K+   +DGLS+++V   A   L  AGDAMDLVG SG+VWGSA RST E   P+FVS GHR+S  T V + R LC +RVPEPVR AD  SRE +R
Sbjct:  122 FPQLLMVDGNGVLHPRGFGLASHLGVLADVPTLGIAKSLFEVDGLSEREVKRSARNSLLRAGDAMDLVGRSGKVWGSALRSTGECVNPVFVSTGHRISLETGVEIVRKLCKFRVPEPVRLADKKSREYLR 251          
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Match: L8GTH2_ACACA (Endonuclease V protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GTH2_ACACA)

HSP 1 Score: 156 bits (395), Expect = 3.280e-46
Identity = 76/127 (59.84%), Postives = 97/127 (76.38%), Query Frame = 1
Query:   10 VILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDVVARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPATAVTLTRLLCNYRVPEPVRQADLVSREAVR 390
            V+ VDGNG+LH RGFGLAS LGVL  +PTIG+GK F H+DGL  ++V A+AA      GD + L+G+SG  WG+AFRST+ S+ PI+VS GHR+S A+AV LT+  C +RVPEP+RQADL SRE +R
Sbjct:   43 VVFVDGNGVLHPRGFGLASHLGVLIGIPTIGVGKTFFHVDGLDMREVKAQAAAACHKGGDWIPLIGQSGVEWGAAFRSTDGSSNPIYVSVGHRISLASAVLLTQASCLHRVPEPIRQADLRSREFLR 169          
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Match: A0A1Y1I408_KLENI (Endonuclease V n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I408_KLENI)

HSP 1 Score: 158 bits (400), Expect = 1.270e-45
Identity = 81/131 (61.83%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    4 PQVILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDVVARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPATAVTLTRLLCNYRVPEPVRQADLVSREAVREY 396
            PQVILVDGNGILH RGFG A  LGV   + TIG+GKNF H+DGL+   V ARA       G+AMD+VGESGRVWG+A+R+   STKPIFVS GH +S  TAV + R  C +RVPEPVRQAD+ SRE +R++
Sbjct:  142 PQVILVDGNGILHPRGFGSACHLGVACHMATIGVGKNFFHLDGLTSDGVRARAEARGLQPGEAMDIVGESGRVWGAAYRTHAGSTKPIFVSVGHLLSLDTAVKIVRACCRFRVPEPVRQADMRSRERLRQH 272          
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Match: A0A2R6XIH5_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XIH5_MARPO)

HSP 1 Score: 159 bits (402), Expect = 1.910e-45
Identity = 76/130 (58.46%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    1 FPQVILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDVVARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPATAVTLTRLLCNYRVPEPVRQADLVSREAVR 390
            +PQ+++VDGNGILH RGFGLAS LGVLAD+PTIG+GKN  H+DGLS  +V   A+     AG+ + L+G SGRVWG+A RS +   KPIF+S GHR+S  TA+ + +  C +RVPEPVRQAD+ SRE +R
Sbjct:  188 YPQLLMVDGNGILHPRGFGLASHLGVLADIPTIGVGKNLFHVDGLSDAEVRLEASKSDLHAGETVPLIGNSGRVWGAAMRSHDGCKKPIFISSGHRISLETAIDVVKRCCRHRVPEPVRQADMRSRERLR 317          
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Match: UPI0010A52387 (endonuclease V n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A52387)

HSP 1 Score: 155 bits (393), Expect = 1.070e-44
Identity = 75/130 (57.69%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    1 FPQVILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDVVARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPATAVTLTRLLCNYRVPEPVRQADLVSREAVR 390
            +PQ++LVDGNGILH RGFGLA  LGV+AD+PTIGIGKN  H+DGL++  V          A D + LVG SG++WG+A RST  S KPIF+S GHR+S  TA+T+ ++ C YRVPEP+RQAD+ SR+ +R
Sbjct:  132 YPQLLLVDGNGILHPRGFGLACHLGVVADLPTIGIGKNLHHVDGLNQSRVRQLLEAEENHAKDFITLVGGSGQIWGAAMRSTQGSIKPIFISIGHRISLRTAITIAQMTCKYRVPEPIRQADIRSRDYIR 261          
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Match: A0A7J7BWR6_TRIWF (Endonuclease V isoform X1 n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7BWR6_TRIWF)

HSP 1 Score: 154 bits (390), Expect = 4.870e-44
Identity = 72/130 (55.38%), Postives = 94/130 (72.31%), Query Frame = 1
Query:    1 FPQVILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDVVARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPATAVTLTRLLCNYRVPEPVRQADLVSREAVR 390
            +PQ+++VDGNG+LH RGFGLA  LGVL D+P IGIGKN  H+DGL++  V+           + + L+G SGR WG A RST  S+KPIFVS GHRVS  TA+ + ++ C YRVPEP+RQAD++SRE +R
Sbjct:  143 YPQLLMVDGNGVLHPRGFGLACHLGVLTDLPAIGIGKNLHHVDGLTQSGVIQLLKAKESSGEEFVTLMGRSGRTWGVAMRSTKVSSKPIFVSIGHRVSLDTAINIVKMTCKYRVPEPIRQADIISREHIR 272          
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Match: A0A8J4PRQ2_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PRQ2_9MYCE)

HSP 1 Score: 153 bits (387), Expect = 7.940e-44
Identity = 76/129 (58.91%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    4 PQVILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDVVARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPATAVTLTRLLCNYRVPEPVRQADLVSREAVR 390
            PQVI+VDGNGILH R FGLAS LGVL D+PTIGIGK F H+DGL+ KDV  +        GD ++L GESG+VWG A +S ++S  PI+VS GHR+S  T++ + +    YRVPEPVRQADL SRE +R
Sbjct:  122 PQVIIVDGNGILHPRSFGLASHLGVLIDIPTIGIGKTFFHVDGLNAKDVKKQVELSCHKGGDFIELKGESGKVWGLALQSNDDSKNPIYVSIGHRISLETSLEIIKTTTKYRVPEPVRQADLKSREFIR 250          
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Match: UPI001BB1702E (endonuclease V-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1702E)

HSP 1 Score: 154 bits (390), Expect = 1.350e-43
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    4 PQVILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDVVARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPATAVTLTRLLCNYRVPEPVRQADLVSREAVRE 393
            PQ+I VDGNGI HQRGFG A  LGVL+ +PT+GI K   HID + K D  AR   +L+G G++ DL+GESG++WG A RS  ++  PIFVS GHR+S  TA  L R  C YR+PEPVRQAD+ SRE +R+
Sbjct:  124 PQIIFVDGNGIFHQRGFGTACHLGVLSGIPTVGIAKKLSHIDNIQKDDEHARKVSLLQG-GESFDLIGESGKIWGKALRSCEKTINPIFVSVGHRISLETATVLVRTCCQYRIPEPVRQADIRSREYLRQ 252          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10798.1065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0D7R4_THETB1.190e-4962.88Endonuclease V family protein n=1 Tax=Thecamonas t... [more]
A0A7S1GFA3_9STRA1.800e-4963.36Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D8SHZ0_SELML2.310e-4963.08Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
L8GTH2_ACACA3.280e-4659.84Endonuclease V protein n=1 Tax=Acanthamoeba castel... [more]
A0A1Y1I408_KLENI1.270e-4561.83Endonuclease V n=1 Tax=Klebsormidium nitens TaxID=... [more]
A0A2R6XIH5_MARPO1.910e-4558.46Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
UPI0010A523871.070e-4457.69endonuclease V n=1 Tax=Prosopis alba TaxID=207710 ... [more]
A0A7J7BWR6_TRIWF4.870e-4455.38Endonuclease V isoform X1 n=2 Tax=Tripterygium wil... [more]
A0A8J4PRQ2_9MYCE7.940e-4458.91Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI001BB1702E1.350e-4356.92endonuclease V-like n=1 Tax=Lytechinus variegatus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10798contigS-firma_F_contig10798:2349..2756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog529818.AMSG_04477T0
Preferred nameENDOV
PFAMsEndonuclease_5
Max annot lvl2759|Eukaryota
KEGG koko:K21813
GOsGO:0000287,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004536,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016888,GO:0016891,GO:0016893,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901363
Evalue1.95e-50
EggNOG OGsCOG1515@1|root,KOG4417@2759|Eukaryota
Descriptionendoribonuclease activity, producing 5'-phosphomonoesters
COG categoryL
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.8527443-CDS-S-firma_F_contig10798:2348..27561622815621.8527443-CDS-S-firma_F_contig10798:2348..2756Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10798 2349..2756 +
1696949459.93472-CDS-S-firma_F_contig10798:2348..27561696949459.93472-CDS-S-firma_F_contig10798:2348..2756Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10798 2349..2756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10798.1065.1prot_S-firma_F_contig10798.1065.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10798 2349..2756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10798.1065.1

>prot_S-firma_F_contig10798.1065.1 ID=prot_S-firma_F_contig10798.1065.1|Name=mRNA_S-firma_F_contig10798.1065.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=136bp
FPQVILVDGNGILHQRGFGLASQLGVLADVPTIGIGKNFLHIDGLSKKDV
VARAAGVLKGAGDAMDLVGESGRVWGSAFRSTNESTKPIFVSPGHRVSPA
TAVTLTRLLCNYRVPEPVRQADLVSREAVREYMES*
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mRNA from alignment at S-firma_F_contig10798:2349..2756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10798.1065.1 ID=mRNA_S-firma_F_contig10798.1065.1|Name=mRNA_S-firma_F_contig10798.1065.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=408bp|location=Sequence derived from alignment at S-firma_F_contig10798:2349..2756+ (Sphaerotrichia firma ET2_F female)
TTCCCCCAGGTGATTTTGGTGGACGGCAACGGCATCCTGCACCAGCGAGG GTTTGGCCTGGCCAGCCAGCTGGGCGTGCTGGCGGACGTGCCCACCATTG GCATCGGTAAGAACTTTTTGCACATCGACGGCCTGAGCAAGAAGGACGTC GTCGCGCGGGCAGCGGGAGTCCTCAAGGGCGCGGGCGACGCCATGGACCT CGTCGGCGAGTCTGGGCGGGTGTGGGGGTCCGCCTTCCGCAGCACGAACG AGTCCACCAAGCCCATCTTTGTGTCCCCGGGGCACCGCGTGTCGCCCGCC ACCGCCGTCACCCTCACCCGGCTCCTGTGCAACTACCGCGTGCCGGAGCC CGTGAGGCAGGCGGATTTGGTGTCAAGGGAGGCCGTGCGCGAGTACATGG AGTCGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10798:2349..2756+

>mRNA_S-firma_F_contig10798.1065.1 ID=mRNA_S-firma_F_contig10798.1065.1|Name=mRNA_S-firma_F_contig10798.1065.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=816bp|location=Sequence derived from alignment at S-firma_F_contig10798:2349..2756+ (Sphaerotrichia firma ET2_F female)
TTCCCCCAGGTGATTTTGGTGGACGGCAACGGCATCCTGCACCAGCGAGG
GTTTGGCCTGGCCAGCCAGCTGGGCGTGCTGGCGGACGTGCCCACCATTG
GCATCGGTAAGAACTTTTTGCACATCGACGGCCTGAGCAAGAAGGACGTC
GTCGCGCGGGCAGCGGGAGTCCTCAAGGGCGCGGGCGACGCCATGGACCT
CGTCGGCGAGTCTGGGCGGGTGTGGGGGTCCGCCTTCCGCAGCACGAACG
AGTCCACCAAGCCCATCTTTGTGTCCCCGGGGCACCGCGTGTCGCCCGCC
ACCGCCGTCACCCTCACCCGGCTCCTGTGCAACTACCGCGTGCCGGAGCC
CGTGAGGCAGGCGGATTTGGTGTCAAGGGAGGCCGTGCGCGAGTACATGG
AGTCGTAGTTCCCCCAGGTGATTTTGGTGGACGGCAACGGCATCCTGCAC
CAGCGAGGGTTTGGCCTGGCCAGCCAGCTGGGCGTGCTGGCGGACGTGCC
CACCATTGGCATCGGTAAGAACTTTTTGCACATCGACGGCCTGAGCAAGA
AGGACGTCGTCGCGCGGGCAGCGGGAGTCCTCAAGGGCGCGGGCGACGCC
ATGGACCTCGTCGGCGAGTCTGGGCGGGTGTGGGGGTCCGCCTTCCGCAG
CACGAACGAGTCCACCAAGCCCATCTTTGTGTCCCCGGGGCACCGCGTGT
CGCCCGCCACCGCCGTCACCCTCACCCGGCTCCTGTGCAACTACCGCGTG
CCGGAGCCCGTGAGGCAGGCGGATTTGGTGTCAAGGGAGGCCGTGCGCGA
GTACATGGAGTCGTAG
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