mRNA_S-firma_F_contig10797.1064.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10797.1064.1
Unique NamemRNA_S-firma_F_contig10797.1064.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Match: D7FSM1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSM1_ECTSI)

HSP 1 Score: 514 bits (1324), Expect = 2.990e-172
Identity = 340/503 (67.59%), Postives = 365/503 (72.56%), Query Frame = 1 
Query:    1 TLADNMLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLPYGTMQPLLQPLLDEVEGAADSLSSASADHMAGAAMSESYEYIKAADSPLSLWVFKLSKRLHFGKINSIRGTRAFKYLDDSAMGVDLAVKQVVHVIHGRRRVLKWLGNPPKQRGKIGKFFFRVGMTNKWTRIVLSYRLLGYAKVIGTLVRAMRVLALAVRAVPRATRVLRLAAVFIRSYEGRRRSKDLHEASIVIQRRAGQHMALKVAGQLKTNLRRRTRASSESDIXXXXXXXXXXXXXXXXXXXXXAEP--------DRSRVVSDAPLSSSLGSAGGGRFYVAGE---------------------LTQRELSPLRRSPXXXXXXXXXXXXXXXXXXXXGSGSVXXXXXXXXXXXXXXGGRMPYHSLNRTP-STSSDNQHGVENRQRSPSVIPSESWSE-CSWDEAHDPGSPPR----MTADWTADGDD-TAVTPTTPPYSGTAARR 1401
            TLADNMLSALSFLDMLLQFRTGYVDKNSKIII+PKKVGLHYLRTWF+PDLWCSLPYGTMQPLLQPLLDEVEGAADSLS+ASADH+AG A ++S   IKA DSPLS+WVFKLS+RLH GKIN IRGTRAFKYLDDSAMGVDLAVKQVVHV+ GRRRVLKWLGNPPK+RG+IGKFFFRVG+TNKWTRIVLSYRLLGYAKVIGTLVRAMRVLA+AVRAVPRATRVLRLAAVFIRSYEGRRRSKDLHEASIVIQRRAG+HMALKVAGQLKTNLRRRT        XXXXXXXXXXXXXXXXXXXXX           +RSRVVSDA  SS +G A G     +G                           LS   RSP                    GSGSV               G   Y S+ RTP S +S ++H  ENR RSPS+IPSE WSE  SWDE H P SP R        W  + D  +A TPTTPP +GT A R
Sbjct:  340 TLADNMLSALSFLDMLLQFRTGYVDKNSKIIIDPKKVGLHYLRTWFIPDLWCSLPYGTMQPLLQPLLDEVEGAADSLSNASADHIAGVA-AKSDNMIKATDSPLSMWVFKLSQRLHIGKINGIRGTRAFKYLDDSAMGVDLAVKQVVHVVRGRRRVLKWLGNPPKERGRIGKFFFRVGLTNKWTRIVLSYRLLGYAKVIGTLVRAMRVLAVAVRAVPRATRVLRLAAVFIRSYEGRRRSKDLHEASIVIQRRAGRHMALKVAGQLKTNLRRRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRSRVVSDAGRSS-IGDAYGRDADASGREDGXXXXXXXXXXXXXXXXXXXXXXGLSTPPRSPSLASDGG-------------GSGSVGGWSSGV--------GVSSYSSVYRTPASVASSSEHYGENRPRSPSLIPSEVWSEDLSWDEVHLPRSPQRGAGAANLGWATEWDGHSAGTPTTPPRTGTGATR 819
[Close]
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Match: A0A0R3T3B5_RODNA (Ion_trans domain-containing protein n=3 Tax=Hymenolepididae TaxID=6214 RepID=A0A0R3T3B5_RODNA)

HSP 1 Score: 65.5 bits (158), Expect = 1.230e-7
Identity = 22/55 (40.00%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    4 LADNMLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLPY 168
            +AD ++  + F+D+++ FRT YV+KN +++  PKK+  HYL++WF+ DL  ++P+
Sbjct:  452 IADKLVDVMFFMDIIINFRTTYVNKNDEVVSQPKKIAFHYLKSWFIIDLVAAIPF 506
[Close]
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Match: A0A564Y7D7_HYMDI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A564Y7D7_HYMDI)

HSP 1 Score: 63.9 bits (154), Expect = 4.820e-7
Identity = 21/55 (38.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    4 LADNMLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLPY 168
            + D ++  + F+D+++ FRT YV+KN +++  PKK+  HYL++WF+ DL  ++P+
Sbjct:  294 IVDKLVDVMFFMDIIINFRTTYVNKNDEVVSQPKKIAFHYLKSWFIIDLIAAIPF 348
[Close]
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Match: A0A3S5A4H9_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5A4H9_9PLAT)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-6
Identity = 19/56 (33.93%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 TLADNMLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLPY 168
            T  D+++  +  +D+++ FRT YV+KN +++ +P+K+  HY + WF+ DL  ++P+
Sbjct:   28 TTVDHLVDVMFIVDIIINFRTTYVNKNDEVVSHPRKIATHYFKGWFIIDLVAAIPF 83
[Close]
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Match: A0A2S1WM40_9ANNE (Potassium voltage-gated channel subfamily H member 2 n=1 Tax=Hirudo verbana TaxID=311461 RepID=A0A2S1WM40_9ANNE)

HSP 1 Score: 62.8 bits (151), Expect = 1.180e-6
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 TLADNMLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLPYGTM 177
            T+ D ++  +  +D+L+ FRT YV+KN ++I NP+KV +HY + WFV D+  ++P+  M
Sbjct:  416 TIIDLIVDIMFIVDILINFRTTYVNKNEEVITNPRKVAIHYFKGWFVIDMVAAIPFDLM 474
[Close]
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Match: A0A7R9LLN5_9ACAR (Hypothetical protein (Fragment) n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9LLN5_9ACAR)

HSP 1 Score: 55.1 bits (131), Expect = 3.030e-6
Identity = 20/53 (37.74%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   10 DNMLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLPY 168
            D ++  +  +D+L+ FRT YV+KN +++ +P K+ L+YLR WF+ D+  ++P+
Sbjct:    4 DLLVDVMFIVDILINFRTTYVNKNDEVVSHPGKIALNYLRGWFLIDVVAAIPF 56
[Close]
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Match: A0A3P8KNL9_9TREM (Ion_trans domain-containing protein n=2 Tax=Schistosoma mattheei TaxID=31246 RepID=A0A3P8KNL9_9TREM)

HSP 1 Score: 57.8 bits (138), Expect = 3.130e-6
Identity = 19/53 (35.85%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   10 DNMLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLPY 168
            D ++  +  +D+L+ FRT YV+KN +++ +PK++  HY++ WF+ DL  ++P+
Sbjct:   87 DILVDVMFIIDILINFRTTYVNKNDEVVSHPKRIAAHYIKGWFIIDLVAAIPF 139
[Close]
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Match: UPI00046BFF4B (potassium voltage-gated channel subfamily H member 8 isoform X6 n=1 Tax=Tribolium castaneum TaxID=7070 RepID=UPI00046BFF4B)

HSP 1 Score: 61.2 bits (147), Expect = 3.250e-6
Identity = 25/59 (42.37%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   10 DNMLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLPYGTMQPL 186
            D ++ AL F+D+LL FRT YV++  +++ N K + L+YLRTWF+ D+  +LP+  +  L
Sbjct:  102 DVIVEALFFIDILLNFRTTYVNRKGEVVSNWKAISLNYLRTWFIVDMLAALPFDLLYAL 160
[Close]
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Match: D6X119_TRICA (Potassium voltage-gated channel protein eag-like Protein n=7 Tax=Tribolium TaxID=7069 RepID=D6X119_TRICA)

HSP 1 Score: 61.2 bits (147), Expect = 3.460e-6
Identity = 25/59 (42.37%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   10 DNMLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLPYGTMQPL 186
            D ++ AL F+D+LL FRT YV++  +++ N K + L+YLRTWF+ D+  +LP+  +  L
Sbjct:  277 DVIVEALFFIDILLNFRTTYVNRKGEVVSNWKAISLNYLRTWFIVDMLAALPFDLLYAL 335
[Close]
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Match: A0A183KYW9_9TREM (Ion_trans domain-containing protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183KYW9_9TREM)

HSP 1 Score: 57.8 bits (138), Expect = 3.490e-6
Identity = 19/53 (35.85%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   10 DNMLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLPY 168
            D ++  +  +D+L+ FRT YV+KN +++ +PK++  HY++ WF+ DL  ++P+
Sbjct:   83 DILVDVMFIIDILINFRTTYVNKNDEVVSHPKRIAAHYIKGWFIIDLVAAIPF 135
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10797.1064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSM1_ECTSI2.990e-17267.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0R3T3B5_RODNA1.230e-740.00Ion_trans domain-containing protein n=3 Tax=Hymeno... [more]
A0A564Y7D7_HYMDI4.820e-738.18Cyclic nucleotide-binding domain-containing protei... [more]
A0A3S5A4H9_9PLAT1.070e-633.93Hypothetical protein n=1 Tax=Protopolystoma xenopo... [more]
A0A2S1WM40_9ANNE1.180e-640.68Potassium voltage-gated channel subfamily H member... [more]
A0A7R9LLN5_9ACAR3.030e-637.74Hypothetical protein (Fragment) n=1 Tax=Medioppia ... [more]
A0A3P8KNL9_9TREM3.130e-635.85Ion_trans domain-containing protein n=2 Tax=Schist... [more]
UPI00046BFF4B3.250e-642.37potassium voltage-gated channel subfamily H member... [more]
D6X119_TRICA3.460e-642.37Potassium voltage-gated channel protein eag-like P... [more]
A0A183KYW9_9TREM3.490e-635.85Ion_trans domain-containing protein n=1 Tax=Schist... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10797contigS-firma_F_contig10797:15..4915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FSM1
PFAMsDUF1682,NopRA1,cNMP_binding,iPGM_N
Max annot lvl2759|Eukaryota
Evalue9.35e-169
EggNOG OGsKOG0498@1|root,KOG0498@2759|Eukaryota
Descriptionvoltage-gated potassium channel activity
COG categoryU
Hectar predicted targeting categoryother localisation
Exons8
Model size1465
Cds size1449
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.706117-UTR-S-firma_F_contig10797:14..291622815621.706117-UTR-S-firma_F_contig10797:14..29Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10797 15..29 +
1696949459.7853122-UTR-S-firma_F_contig10797:14..291696949459.7853122-UTR-S-firma_F_contig10797:14..29Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10797 15..29 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.7170777-CDS-S-firma_F_contig10797:29..1221622815621.7170777-CDS-S-firma_F_contig10797:29..122Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 30..122 +
1696949459.7978137-CDS-S-firma_F_contig10797:29..1221696949459.7978137-CDS-S-firma_F_contig10797:29..122Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 30..122 +
1622815621.7300608-CDS-S-firma_F_contig10797:534..6331622815621.7300608-CDS-S-firma_F_contig10797:534..633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 535..633 +
1696949459.8182445-CDS-S-firma_F_contig10797:534..6331696949459.8182445-CDS-S-firma_F_contig10797:534..633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 535..633 +
1622815621.7425103-CDS-S-firma_F_contig10797:1454..16291622815621.7425103-CDS-S-firma_F_contig10797:1454..1629Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 1455..1629 +
1696949459.8319852-CDS-S-firma_F_contig10797:1454..16291696949459.8319852-CDS-S-firma_F_contig10797:1454..1629Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 1455..1629 +
1622815621.7552075-CDS-S-firma_F_contig10797:2274..24651622815621.7552075-CDS-S-firma_F_contig10797:2274..2465Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 2275..2465 +
1696949459.8482425-CDS-S-firma_F_contig10797:2274..24651696949459.8482425-CDS-S-firma_F_contig10797:2274..2465Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 2275..2465 +
1622815621.7674549-CDS-S-firma_F_contig10797:2891..30981622815621.7674549-CDS-S-firma_F_contig10797:2891..3098Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 2892..3098 +
1696949459.8636093-CDS-S-firma_F_contig10797:2891..30981696949459.8636093-CDS-S-firma_F_contig10797:2891..3098Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 2892..3098 +
1622815621.780032-CDS-S-firma_F_contig10797:3607..40141622815621.780032-CDS-S-firma_F_contig10797:3607..4014Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 3608..4014 +
1696949459.8825052-CDS-S-firma_F_contig10797:3607..40141696949459.8825052-CDS-S-firma_F_contig10797:3607..4014Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 3608..4014 +
1622815621.7982118-CDS-S-firma_F_contig10797:4310..44791622815621.7982118-CDS-S-firma_F_contig10797:4310..4479Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 4311..4479 +
1696949459.9032671-CDS-S-firma_F_contig10797:4310..44791696949459.9032671-CDS-S-firma_F_contig10797:4310..4479Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 4311..4479 +
1622815621.810905-CDS-S-firma_F_contig10797:4807..49151622815621.810905-CDS-S-firma_F_contig10797:4807..4915Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 4808..4915 +
1696949459.924114-CDS-S-firma_F_contig10797:4807..49151696949459.924114-CDS-S-firma_F_contig10797:4807..4915Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10797 4808..4915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10797.1064.1prot_S-firma_F_contig10797.1064.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10797 30..4915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10797.1064.1

>prot_S-firma_F_contig10797.1064.1 ID=prot_S-firma_F_contig10797.1064.1|Name=mRNA_S-firma_F_contig10797.1064.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=483bp
MLSALSFLDMLLQFRTGYVDKNSKIIINPKKVGLHYLRTWFVPDLWCSLP
YGTMQPLLQPLLDEVEGAADSLSSASADHMAGAAMSESYEYIKAADSPLS
LWVFKLSKRLHFGKINSIRGTRAFKYLDDSAMGVDLAVKQVVHVIHGRRR
VLKWLGNPPKQRGKIGKFFFRVGMTNKWTRIVLSYRLLGYAKVIGTLVRA
MRVLALAVRAVPRATRVLRLAAVFIRSYEGRRRSKDLHEASIVIQRRAGQ
HMALKVAGQLKTNLRRRTRASSESDILTSSSCAAAAAAAAAAAAASSAEP
DRSRVVSDAPLSSSLGSAGGGRFYVAGELTQRELSPLRRSPRRRRGVSTP
PRSPSLGSDGGGSGSVGGGFGVGGGGGWISGGRMPYHSLNRTPSTSSDNQ
HGVENRQRSPSVIPSESWSECSWDEAHDPGSPPRMTADWTADGDDTAVTP
TTPPYSGTAARRRRSSVNASENGVRAFPPLTRS
back to top

mRNA from alignment at S-firma_F_contig10797:15..4915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10797.1064.1 ID=mRNA_S-firma_F_contig10797.1064.1|Name=mRNA_S-firma_F_contig10797.1064.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4901bp|location=Sequence derived from alignment at S-firma_F_contig10797:15..4915+ (Sphaerotrichia firma ET2_F female)
ACGCTGGCGGACAACATGCTGAGCGCCTTGTCCTTCCTGGACATGCTGCT
GCAGTTCCGCACCGGCTACGTCGATAAGAACTCCAAGATTATCATCAACC
CCAAGAAGGTACGGTCAGTGCAGACGGTGTGGATTTGGGGGTGTTTGTTA
CGGGTTACGGGCTCCCCCCAACCACTGTGTTCCAAGTGGCGTGGATACCC
TTGCCCGTCTCGTCCTAAGGTTGTGCTGTCTTCTCTCTAGATAGCTGCGT
CAGGTTGCCGCCGCTTGTGAGATACTAACGGGACTTGGTCATGGCGGCGG
CGACGGCGGCGGTGGTGGTGGTGGAAGTGACCCGACCCTATCCTGCTTGC
ACTGCGTTTGCTGTGTTCTGCGCACGAACACGGTTGGCCATGATTTTGGT
TTTGAACTGACGGTGGTCAACACTATGATAACGGTGCCGATGCTGTTTAT
ACGGTGCCGATGCTGCCGTTGCTGGTGATGTTGATGCTTGTGGGAAACGG
CGGCGATCTCGTCCTCGAAGGTTGGGCTCCACTACCTCCGGACTTGGTTC
GTACCCGACCTCTGGTGCTCCCTGCCCTACGGGACCATGCAGCCGCTGCT
GCAGCCTCTGCTCGACGAGGTGCTGTGCTAAATTCGCGTCCGTGTGCTTA
TCGTTGCGTTGCTCAACTCCTGCGTCGTATGGTGGCGCCGCCTCTTGTAG
TAATTTCCCATACCTCTGTTTGTCTTGCGCCCGAAGTGGCTGTTGCTTTT
AAAATGAATTTTCCACAAAACGTCAGCCGTCCACGTCGGTCCTGTGAATA
AATCATTATTAGGGGGACTTGTTGTAACACACTAACCCTCCCCGTCCCAG
CCGACAGCACAAAATCCGCCATGTTTCGTGTTATTTTATCACACGTACGA
CTTAGTATATTTGAGCGCTGATACGACTGTAAGAATCCCTTCGCAACTGC
CTGCCTCTGTATGGGGTTGGTTGGTTTGTGGTGCTTATGTCGCCGCTCCC
CCGCAAAACATTCAACGCGCTCGTTCGATCCGAGCACCTACCTCAGTTCC
GGTTTTTCGCACGACATTTTTGAAGACTCTCAATATTCAGCTTTGCCGAG
CACTTTCCTCTCTTGCTCATTCCTTTAACCCCCTCAAAGGTGAGAGCCGC
CTCAAAACAGGGTTCTCTTCGAAGATTTACTTGTGCGATTTTGCCCTCTC
TCTCGAAGATTTAGATACTTCTTGTGCGATCTTGCCCTCTAATTCCTCCC
ACACACCAACAAACACCAACACATCCAAACACATAGCTGCAACCGCCGCG
GTCGTCCGGAAACAACAAAGATACCCGCCGACGACAACGACAGCAGAACG
AGCAGTGCCGAGACACCAGCGTCCCCCCCCTACCAGCCCTTTGCTGACAC
GCCCAGACGGCGTTGCGGTGCTTGTCGAATCGCCGTGCAGGTGGAAGGCG
CCGCGGATTCCCTGTCGAGCGCCAGCGCGGACCACATGGCCGGCGCCGCC
ATGTCCGAGAGCTACGAGTACATCAAGGCCGCCGACTCGCCGCTCAGCCT
CTGGGTCTTCAAGCTCAGCAAGCGGCTCCACTTCGGCAAGATCAACAGCA
TCCGAGGCACTCGAGGTTAGGTTCAACCAGGGGAATTTTTGGATGGTGTT
GTGGGTCTCGACGTATGTACGACGGACAGGGCGGTATTTTTTAGGTCGAG
GTTTGTGGTTCTTGTGGTTCTTTCCTTGCATGCGGTGTAATAGTGCCGAG
ACCTGCGTCCGTGTCGCCTAACTTGCAAGGACCGGTGAGCGCCATATCTC
TCTGTGTACAATACGTCGGCGGTGTTTGGTATTTGAAACTTCTTATTGGG
ATGCCGGCAATGGGTCGCGCCGCAGCGAGCATTGAGAAGTGATGAGGAGA
CAAACAGTGCAGCAGATCTTGACCGCCTCCGTCTGCCTTCAGCACGTGTC
GGACACGTGCAAATGACACGACTCTACGGGTGGCGCACGCGGGTGTTCCC
GTTTTGTTTCTGAGGCTGTCGTCGTCCATCGTGCCAGCGTTTCGCGCCGT
TTTCCGCCCCGAGTTTCTGCAACGCGCAGAAATCCTGACGTCTCCCCTCT
CGGCGCCCCGTCTAACGCTATCGTTCTTCACGAACACGCCGTCAGAGTAT
CCAGCCCCTCGCGTCGCGCGCTTCTTCCGGAAATAAAGCATGTTTTCTCA
CAACCCTTTGTCTACTTTGCCGATCTGGCGTTCGTGTCCCAAATCCAATC
CCGCTCCCAGCTTTCAAGTACCTGGACGACTCTGCGATGGGCGTGGACCT
GGCGGTGAAGCAGGTCGTCCACGTGATTCACGGCAGGCGGAGGGTGCTCA
AGTGGCTGGGCAACCCGCCCAAGCAGAGGGGGAAGATCGGCAAGTTCTTC
TTCCGCGTCGGCATGACCAACAAGTGGACGCGCATCGTGCTGTCCTACAG
GGTGAGTCGAGTGCGAGTGATTTAGGGTCGAGGCGTCGGGGGGGCTTTGG
AAGGTGCCATGAGGGTACGAGTCGTTTTTTGGTGGCGCTGTTTCTGCTCC
CTCTAGGGAGGAGGCTCGTGAGGCTCTGGTCGAAGGTAGGGGAATCAAGT
ACGGGTGGTGTTGTTGGTCTTGCAGGAAGCATGGCATCTTGCGTTGTGGG
TGCTTTCCGGTGTCCTTGTTGCTTGATTTGTTCTAGCTGGCGGGGGGGGC
TGTTTGCGCGCGTGTACAAGCTTGCCGATCGTTCGCGGGCGACACTCCTA
GCGGTGACCTGGCCTTCCTTGTGCACTCTGTTCGTGTACCTTTCTTTGGC
TGAGTGTGCCTTCCGCCGTTTTGTGTTTGTTATCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTGTTTCTCGTCAGCTGCTGGGCTACGCGAAGGTGAT
CGGAACCCTCGTGCGCGCGATGAGAGTGCTTGCTCTCGCGGTCCGCGCGG
TGCCGAGAGCGACCAGGGTGTTGAGGCTGGCCGCCGTGTTCATTCGGAGC
TACGAGGGTCGGCGGCGGTCGAAGGACTTGCACGAGGCGTCCATCGTGAT
TCAGCGTCGGGCCGGGCAGCACATGGCCTTGAAGGTAAGGCTTGCCGTAA
ACTCGCCTGGGGGGGGGGGGCAGGAAGTACATACTATGCACGCTGGTGAT
GGGATCAATTCATGCTGGTGTTGGTCGGCGATTCACAACGCACGTGGCCC
TGTAAGTGCTGTTCTGCTGGTGTTGTGCTCGTTTTTGGGCATAGGTGGTG
TGCGCATTGTAGATATCTCATGGGACAACCGGGCCGCGAGCTGGGGCTAT
TTTTATTCTTTTGCCGCCTGCGATGCACAAAGTCTCAAGCTCAGTTTTCG
CTATCACCCGGAAGACGGAGCGCATCTCGGACTGGGGGGGAATGGGTAAT
TTGGTTGCACTGCCTTGCGTTCGTTGAATTTACCCCGCATGTGTGTGCCG
GAGGGGGGGCCCTAGGAAAACGTGAAAACATCCATGCGGAAAAAGCAAGA
AGCTAACTGGTTGGCGTGAAGTCTCCCCCCGCCCCTCTCCTCTGTAGCGT
ACCTCGCCAACCACTCGTTGTACATGCAACACGAAAAACGCAGGTTGCGG
GACAGCTCAAGACAAACCTACGGCGCAGAACTCGCGCTTCCTCCGAGTCG
GACATCCTCACTTCCTCCTCCTGCGCCGCCGCCGCTGCCGCCGCCGCGGC
CGCCGCCGCCGCCTCTTCGGCCGAGCCCGACCGGTCGAGGGTGGTGTCCG
ACGCCCCTCTGTCGTCCTCTCTCGGCAGCGCCGGAGGAGGCCGGTTCTAT
GTGGCCGGGGAACTCACCCAGAGAGAGCTGTCTCCGCTCCGGCGGTCGCC
GAGACGACGGAGAGGGGTGTCCACGCCACCCCGGTCCCCGTCCCTCGGCA
GCGACGGAGGCGGGAGCGGCAGTGTGGGTGGTGGTTTCGGCGTTGGCGGC
GGCGGCGGGTGGATTTCCGGCGGGAGGATGCCCTACCATTCCCTCAACAG
GTGTGTGGGTGTATCTGCTGTGTGGGTGTTGTGTGTGTGTGTGTGACGAC
GCGCGGGAAACGATAGTGGTGGTGGCGGCGGTGGCGGTGACCGGGTGTCT
GGATGTCTGTATTTGTGTGGCTACAGAGTTGTGCTTGGGTTAGTTGCTTG
TGCTAAATTTACCCGAACTTGGCTGGAGTCGGTGCCTGAAGCAGCTTATG
TGTTCGGTGGCGCGGCATGGGCTGGAGAAGCCAATCATTCAGCTCGCTCA
TCGCACGCCTTCTCTTCCCGTCATGCGCCCACGCTTCCATCGGTAGGACC
CCCAGCACCAGCAGCGACAACCAACACGGTGTCGAAAACCGGCAGCGTTC
TCCGTCGGTGATTCCTTCCGAAAGCTGGTCGGAGTGTAGCTGGGACGAGG
CTCACGACCCCGGATCACCGCCGCGAATGACGGCGGACTGGACGGCGGAT
GGGGATGACACTGCGGTGAGAGAAAAGTGCCACTGTCCTCCAGTTGGGAG
CGGTGAGGCAAGGCTTAATAGTGTGTCTACCACAGAGCCCCCCTGGAACG
ACGTTTTTCACTGGTTGGACGCGGAGATCGCCGACGTTCGGTGATAGCTC
GAAGCAAATCGTTGTTTCGTTGTCGACCCTTTGACGACGGCCTTGGGGGA
AAAATCGTATTGTCAGTAGTGCCCGCTCGGGGCCGGTATTGTGAGACGTG
ACGGACAATTTTCTGACGCCGAGAGACCGCGCAAACTCTCGAGGCTTTGC
CGGCCTCAACACCTACCTCAACGATCACGCCGTTTGACAACAGGTGACCC
CTACCACCCCGCCTTACAGTGGAACCGCGGCGCGACGGAGGAGGAGTAGC
GTCAACGCGAGCGAGAACGGTGTGAGGGCGTTCCCCCCCTTGACACGGTC
C
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10797:15..4915+

>mRNA_S-firma_F_contig10797.1064.1 ID=mRNA_S-firma_F_contig10797.1064.1|Name=mRNA_S-firma_F_contig10797.1064.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2898bp|location=Sequence derived from alignment at S-firma_F_contig10797:15..4915+ (Sphaerotrichia firma ET2_F female)
ATGCTGAGCGCCTTGTCCTTCCTGGACATGCTGCTGCAGTTCCGCACCGG
CTACGTCGATAAGAACTCCAAGATTATCATCAACCCCAAGAAGATGCTGA
GCGCCTTGTCCTTCCTGGACATGCTGCTGCAGTTCCGCACCGGCTACGTC
GATAAGAACTCCAAGATTATCATCAACCCCAAGAAGGTTGGGCTCCACTA
CCTCCGGACTTGGTTCGTACCCGACCTCTGGTGCTCCCTGCCCTACGGGA
CCATGCAGCCGCTGCTGCAGCCTCTGCTCGACGAGGTTGGGCTCCACTAC
CTCCGGACTTGGTTCGTACCCGACCTCTGGTGCTCCCTGCCCTACGGGAC
CATGCAGCCGCTGCTGCAGCCTCTGCTCGACGAGGTGGAAGGCGCCGCGG
ATTCCCTGTCGAGCGCCAGCGCGGACCACATGGCCGGCGCCGCCATGTCC
GAGAGCTACGAGTACATCAAGGCCGCCGACTCGCCGCTCAGCCTCTGGGT
CTTCAAGCTCAGCAAGCGGCTCCACTTCGGCAAGATCAACAGCATCCGAG
GCACTCGAGGTGGAAGGCGCCGCGGATTCCCTGTCGAGCGCCAGCGCGGA
CCACATGGCCGGCGCCGCCATGTCCGAGAGCTACGAGTACATCAAGGCCG
CCGACTCGCCGCTCAGCCTCTGGGTCTTCAAGCTCAGCAAGCGGCTCCAC
TTCGGCAAGATCAACAGCATCCGAGGCACTCGAGCTTTCAAGTACCTGGA
CGACTCTGCGATGGGCGTGGACCTGGCGGTGAAGCAGGTCGTCCACGTGA
TTCACGGCAGGCGGAGGGTGCTCAAGTGGCTGGGCAACCCGCCCAAGCAG
AGGGGGAAGATCGGCAAGTTCTTCTTCCGCGTCGGCATGACCAACAAGTG
GACGCGCATCGTGCTGTCCTACAGGCTTTCAAGTACCTGGACGACTCTGC
GATGGGCGTGGACCTGGCGGTGAAGCAGGTCGTCCACGTGATTCACGGCA
GGCGGAGGGTGCTCAAGTGGCTGGGCAACCCGCCCAAGCAGAGGGGGAAG
ATCGGCAAGTTCTTCTTCCGCGTCGGCATGACCAACAAGTGGACGCGCAT
CGTGCTGTCCTACAGGCTGCTGGGCTACGCGAAGGTGATCGGAACCCTCG
TGCGCGCGATGAGAGTGCTTGCTCTCGCGGTCCGCGCGGTGCCGAGAGCG
ACCAGGGTGTTGAGGCTGGCCGCCGTGTTCATTCGGAGCTACGAGGGTCG
GCGGCGGTCGAAGGACTTGCACGAGGCGTCCATCGTGATTCAGCGTCGGG
CCGGGCAGCACATGGCCTTGAAGCTGCTGGGCTACGCGAAGGTGATCGGA
ACCCTCGTGCGCGCGATGAGAGTGCTTGCTCTCGCGGTCCGCGCGGTGCC
GAGAGCGACCAGGGTGTTGAGGCTGGCCGCCGTGTTCATTCGGAGCTACG
AGGGTCGGCGGCGGTCGAAGGACTTGCACGAGGCGTCCATCGTGATTCAG
CGTCGGGCCGGGCAGCACATGGCCTTGAAGGTTGCGGGACAGCTCAAGAC
AAACCTACGGCGCAGAACTCGCGCTTCCTCCGAGTCGGACATCCTCACTT
CCTCCTCCTGCGCCGCCGCCGCTGCCGCCGCCGCGGCCGCCGCCGCCGCC
TCTTCGGCCGAGCCCGACCGGTCGAGGGTGGTGTCCGACGCCCCTCTGTC
GTCCTCTCTCGGCAGCGCCGGAGGAGGCCGGTTCTATGTGGCCGGGGAAC
TCACCCAGAGAGAGCTGTCTCCGCTCCGGCGGTCGCCGAGACGACGGAGA
GGGGTGTCCACGCCACCCCGGTCCCCGTCCCTCGGCAGCGACGGAGGCGG
GAGCGGCAGTGTGGGTGGTGGTTTCGGCGTTGGCGGCGGCGGCGGGTGGA
TTTCCGGCGGGAGGATGCCCTACCATTCCCTCAACAGGTTGCGGGACAGC
TCAAGACAAACCTACGGCGCAGAACTCGCGCTTCCTCCGAGTCGGACATC
CTCACTTCCTCCTCCTGCGCCGCCGCCGCTGCCGCCGCCGCGGCCGCCGC
CGCCGCCTCTTCGGCCGAGCCCGACCGGTCGAGGGTGGTGTCCGACGCCC
CTCTGTCGTCCTCTCTCGGCAGCGCCGGAGGAGGCCGGTTCTATGTGGCC
GGGGAACTCACCCAGAGAGAGCTGTCTCCGCTCCGGCGGTCGCCGAGACG
ACGGAGAGGGGTGTCCACGCCACCCCGGTCCCCGTCCCTCGGCAGCGACG
GAGGCGGGAGCGGCAGTGTGGGTGGTGGTTTCGGCGTTGGCGGCGGCGGC
GGGTGGATTTCCGGCGGGAGGATGCCCTACCATTCCCTCAACAGGACCCC
CAGCACCAGCAGCGACAACCAACACGGTGTCGAAAACCGGCAGCGTTCTC
CGTCGGTGATTCCTTCCGAAAGCTGGTCGGAGTGTAGCTGGGACGAGGCT
CACGACCCCGGATCACCGCCGCGAATGACGGCGGACTGGACGGCGGATGG
GGATGACACTGCGGACCCCCAGCACCAGCAGCGACAACCAACACGGTGTC
GAAAACCGGCAGCGTTCTCCGTCGGTGATTCCTTCCGAAAGCTGGTCGGA
GTGTAGCTGGGACGAGGCTCACGACCCCGGATCACCGCCGCGAATGACGG
CGGACTGGACGGCGGATGGGGATGACACTGCGGTGACCCCTACCACCCCG
CCTTACAGTGGAACCGCGGCGCGACGGAGGAGGAGTAGCGTCAACGCGAG
CGAGAACGGTGTGAGGGCGTTCCCCCCCTTGACACGGTCCGTGACCCCTA
CCACCCCGCCTTACAGTGGAACCGCGGCGCGACGGAGGAGGAGTAGCGTC
AACGCGAGCGAGAACGGTGTGAGGGCGTTCCCCCCCTTGACACGGTCC
back to top