mRNA_S-firma_F_contig10792.1059.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10792.1059.1
Unique NamemRNA_S-firma_F_contig10792.1059.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10792.1059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10792contigS-firma_F_contig10792:3381..4236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size372
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10792.1059.1prot_S-firma_F_contig10792.1059.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10792 3570..4236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.2443404-UTR-S-firma_F_contig10792:3380..35691622815621.2443404-UTR-S-firma_F_contig10792:3380..3569Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10792 3381..3569 +
1696949459.450979-UTR-S-firma_F_contig10792:3380..35691696949459.450979-UTR-S-firma_F_contig10792:3380..3569Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10792 3381..3569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.2571228-CDS-S-firma_F_contig10792:3569..37201622815621.2571228-CDS-S-firma_F_contig10792:3569..3720Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10792 3570..3720 +
1696949459.4623408-CDS-S-firma_F_contig10792:3569..37201696949459.4623408-CDS-S-firma_F_contig10792:3569..3720Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10792 3570..3720 +
1622815621.2711556-CDS-S-firma_F_contig10792:4204..42361622815621.2711556-CDS-S-firma_F_contig10792:4204..4236Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10792 4205..4236 +
1696949459.4745753-CDS-S-firma_F_contig10792:4204..42361696949459.4745753-CDS-S-firma_F_contig10792:4204..4236Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10792 4205..4236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10792.1059.1

>prot_S-firma_F_contig10792.1059.1 ID=prot_S-firma_F_contig10792.1059.1|Name=mRNA_S-firma_F_contig10792.1059.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=61bp
MRLLAAVVVPCCFTRGFVPAIQRGVVARGFNAAGLRRRGGDAGSAVSGRS
GTRSSWNMKAG
back to top

mRNA from alignment at S-firma_F_contig10792:3381..4236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10792.1059.1 ID=mRNA_S-firma_F_contig10792.1059.1|Name=mRNA_S-firma_F_contig10792.1059.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=856bp|location=Sequence derived from alignment at S-firma_F_contig10792:3381..4236+ (Sphaerotrichia firma ET2_F female)
CGATACGGGCTACCCGGACAAGCCGAGGGCACGGGATCGTAGAGATACGG
CACGTTGCTGTGTTTTTCGTTCTGTCCATCCATCCACCCACGTCTCGACC
GGGTCTACTGGAGATCACACGGGCAAGAATCGCAGCTGACACCGCCAAAT
CCAGCAGCAGGGCGCGGCTGCAGGAACAGAGGAATCATCATGCGCTTGTT
GGCAGCGGTGGTGGTCCCGTGCTGCTTCACTAGAGGGTTTGTCCCGGCTA
TTCAGCGTGGGGTGGTGGCCCGCGGCTTCAACGCTGCAGGATTGAGGAGA
AGAGGTGGAGACGCAGGAAGCGCTGTCAGTGGTCGGTCAGGTGCGTTTTT
GTACTGCCGGCAGCTGGTAAGTTGTAAATTACACGATGCGCTCGCCGGGT
TTGCTGCCGCCGCCTTGTGTAGCTTGGTTCATGGTCGGCAATACAAACGA
CGAGGGTGGCATGTCGGTGTGTCGGTGCGCTTCCCAAGGTGTTGGCAGTT
ATCCGCGCCTGGGTGTGCTACGTGGTCATTCTGGCTGCATGATCCAGGTT
GCAGCTGCCTCGAACACACAAACAGGAACAACCCCGTGCGGTTTGCCACT
AACGCGCTCCCAGAGGTCATCAGTGCTGTTGGTAGGTTGAGGTTGTTGAC
GGCGATGGGTACAGTAGCTTGGTTGTTTGCATTCACTGCGCTGCGCCTGA
AAACAACCAAGCTACTGTCTGTACCTGAAAACAACTCGGAACCTCAGCAC
CCCACGTCTAGAACCGTATTTCGTGTTTTCGACCGCGAAAAAACTGCCGC
GAATCTCTGCGCTCTTCCAAGCAGGTACCCGGTCTTCCTGGAACATGAAA
GCTGGC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10792:3381..4236+

>mRNA_S-firma_F_contig10792.1059.1 ID=mRNA_S-firma_F_contig10792.1059.1|Name=mRNA_S-firma_F_contig10792.1059.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=366bp|location=Sequence derived from alignment at S-firma_F_contig10792:3381..4236+ (Sphaerotrichia firma ET2_F female)
ATGCGCTTGTTGGCAGCGGTGGTGGTCCCGTGCTGCTTCACTAGAGGGTT
TGTCCCGGCTATTCAGCGTGGGGTGGTGGCCCGCGGCTTCAACGCTGCAG
GATTGAGGAGAAGAGGTGGAGACGCAGGAAGCGCTGTCAGTGGTCGGTCA
GATGCGCTTGTTGGCAGCGGTGGTGGTCCCGTGCTGCTTCACTAGAGGGT
TTGTCCCGGCTATTCAGCGTGGGGTGGTGGCCCGCGGCTTCAACGCTGCA
GGATTGAGGAGAAGAGGTGGAGACGCAGGAAGCGCTGTCAGTGGTCGGTC
AGGTACCCGGTCTTCCTGGAACATGAAAGCTGGCGTACCCGGTCTTCCTG
GAACATGAAAGCTGGC
back to top