mRNA_S-firma_F_contig1079.1053.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1079.1053.1
Unique NamemRNA_S-firma_F_contig1079.1053.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Match: D8LTC5_ECTSI (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTC5_ECTSI)

HSP 1 Score: 560 bits (1443), Expect = 3.490e-193
Identity = 325/469 (69.30%), Postives = 355/469 (75.69%), Query Frame = 3 
Query:  231 MQARRGGKGRRRGRTADGRPSSGPRAYEGAGTVPVKESPSTAAATAALAVQHAAHHELLEVAHSHKAVLRPGVLSQALLRIAKPLVQVAQAPAREELLTDPRLAAVFMAASSPVAA--GDEPKVPAATG---QALSGPQAADIVWALGLLQWRPPGGVG-------RRRLAQLVELVAQAASSKRGIEEGYITNVLWALERLHVETFAPTTEAARATEQAEAWRVVETTKGTAGEESLATTAVGVGGVGEGEAGDTAWEGSRAARELRRRVESLPFRAIPSLFQGLRVEDFRQEVAFSRDEILLGGGKVLSESRLTAWQSSDGLPFSYSGKVMEPAPFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHS-RGRHAFYLSSGDCVRMTEGCQRDYQHCVKVAKEDVGARISLVFKQSISGLERGGKSAAVG 1598
            M ARRGGKGRRRGRT      SG     GA    V+E+PSTAAA AALAVQHA+H +LL VA+SH+A LRPG+LSQALLR+AKPLVQV++  ARE +L DPRL A+F+AASSP AA  G+    PAA G   Q+LSGPQAAD+VWA GLLQW P             RRLAQLV LVA+AASSK GI++G++TNVLWALERL V       +  R   +AEA R  ET     G                       WEG  A  ELR RVE+LPFRAIPSLF+GLRVEDFR EVAF RDEILLGGGKVLSESRLTAWQSSDGLPF+YSGKVMEP  FSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTR F+LR+TLDHS RGRHAFYLSSGDCVRMT+GCQRDYQHCVKVAKE+VGARISLVFKQSISG ER    AA G
Sbjct:    1 MHARRGGKGRRRGRTG----VSGSPRRAGAAANAVRETPSTAAALAALAVQHASHEDLLGVAYSHRAALRPGLLSQALLRLAKPLVQVSRQTAREAVLADPRLQALFLAASSPAAADGGETAAEPAAAGGTNQSLSGPQAADVVWACGLLQWLPADDXXXXXXXXXHRRLAQLVALVARAASSKVGIDDGHVTNVLWALERLGVSKSPAEKKRKRKACEAEAARGAETPIAAPG---CGAKXXXXXXXXXXXXXXGVWEGDEAVEELRSRVENLPFRAIPSLFEGLRVEDFRDEVAFRRDEILLGGGKVLSESRLTAWQSSDGLPFAYSGKVMEPTSFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRQFALRRTLDHSPRGRHAFYLSSGDCVRMTDGCQRDYQHCVKVAKEEVGARISLVFKQSISGRERRRGVAAEG 462
[Close]
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Match: A0A836CIU8_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU8_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.550e-61
Identity = 135/323 (41.80%), Postives = 174/323 (53.87%), Query Frame = 3 
Query:  633 AADIVWALGLLQWRPPGGVGRRRLAQLVELVAQAASSKRGIEEGYITNVLWALERLHVETFAPTTEAARATEQAEAWRVVETTKGTAGEESLATTAVGVGGVGEGEAGDTAWEGSRAARELRRRVESL--PF----RAIPSLFQGLRVEDFRQEVAFSRDEILLGGG---KVLSESRLTAWQSSDGLPFSYSGKVMEPAPFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHSRGRHAFYLSSGDCVRMTEGCQRDYQHCVKV----AKEDVGARISLVFKQSIS 1562
            A D +WALGLL   P  G        L  L+A+ A+    ++ G ++ ++W+L+R+  E   P                                                       +EL+R +E+L  PF    R +P+ +    VE   QEV F RDEI LG G   KVL ESRLTAWQS  GL FSYSGK M P P +P V++LR+AL E TG LYDGVL+NLY + S  MR+H DP  G  WT++T+VVSVG+TR F +R+  DH+  RH FY+SSGDCVRM   CQRD+QHCVKV    A    G R+S VFKQS++
Sbjct:   22 AVDALWALGLLGQPPSEGT-------LKVLLARLAADASKLQPGQLSAIVWSLQRMGAEHLCP-------------------------------------------------------QELKRPLEALKLPFSVHQRLLPASWSN--VESIMQEVEFRRDEIRLGEGGVEKVLEESRLTAWQSCTGLSFSYSGKTMAPQPMTPTVIKLREALAEHTGQLYDGVLINLYMTPSVGMRFHQDPGQGEEWTEETAVVSVGETRQFVMRRVDDHA-DRHVFYVSSGDCVRMFGACQRDWQHCVKVEGGAAAAGGGPRVSFVFKQSMA 279
[Close]
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Match: A0A6T6VXL3_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6VXL3_9EUKA)

HSP 1 Score: 185 bits (470), Expect = 2.140e-49
Identity = 99/210 (47.14%), Postives = 126/210 (60.00%), Query Frame = 3 
Query: 1002 RVESLPFRAIPSLFQGLRVEDFRQEVAFSRDEILLGGGKVLSESRLTAWQSSDGLPFSYSGKVMEPAPFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHSRGRHAFYLSSGDCVRMTEGCQRDYQHCV-------------------KVAKEDVGARISLVFKQSISGLER 1574
            R   LPFR     F  L +E+ R+EV F  DE+ LGG KV+ E R TAWQ+S  +PF YSGK M PA  +P +  +R+ +Y  TGV YD  L+NLY   SS MR+HSDPD G IW+ +T+VVSVGDTRLF LR+T  H + RH FY+ SGD + M   CQ  YQH +                   K +K   G R+S+VFKQS+  LE+
Sbjct:  167 RESLLPFRLHLQAFPELDIEEIRREVQFKTDEVKLGG-KVIRERRETAWQTSSNVPFRYSGKEMAPAAMTPIIQMVRNKIYNLTGVYYDCALINLYPDSSSGMRFHSDPDQGGIWSHNTAVVSVGDTRLFILRETWKHEK-RHHFYVRSGDVMEMVRDCQEKYQHAIRTEESHKFTREMAVETSEFKPSKYTYGPRVSIVFKQSLETLEK 374
[Close]
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Match: A0A7S3Z587_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z587_9EUKA)

HSP 1 Score: 174 bits (440), Expect = 5.660e-47
Identity = 98/221 (44.34%), Postives = 128/221 (57.92%), Query Frame = 3 
Query: 1014 LPFRAIPSLFQGLRVEDFRQEVAFSRDEILLGGGKVLSESRLTAWQSSDGLPFSYSGKVMEPAPFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHSRGRHAFYLSSGDCVRMTEGCQRDYQHCVKVAKEDV---------------------------GARISLVFKQSISGLERGGKSAAV 1595
            LPF     +F  L V+    EV F  +++ L G K LSE R TAWQSS   PF YSGKVM P+PF+P V  +RD +++ TGV YD  LLNLY   +S MR+HSDPD G  W+ +T+VVSVGDTRLF +R+  DHS+ RH FY++SGD + M   CQ+ YQH ++  +  V                           G RIS+VFKQS+   ER  +  A+
Sbjct:    1 LPFTLKMGVFDNLTVDSLLDEVDFKTEQVELQG-KKLSERRQTAWQSSTNKPFRYSGKVMSPSPFTPLVQEIRDRIFKLTGVPYDCALLNLYPDGTSGMRFHSDPDQGIHWSTNTAVVSVGDTRLFVMREMDDHSK-RHQFYVTSGDVLIMHGDCQQRYQHSIRTEEPGVRAAGVALDGSSSSSSSRSKHQRWSAALGPRISIVFKQSLEEEERWKRRGAL 219
[Close]
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Match: A0A835WWM2_9CHLO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WWM2_9CHLO)

HSP 1 Score: 164 bits (415), Expect = 6.080e-40
Identity = 91/194 (46.91%), Postives = 117/194 (60.31%), Query Frame = 3 
Query: 1011 SLPFRAIPSLFQGLRVEDFRQEVAFSRDEILL-GGGKVLSESRLTAWQSSDGLPFSYSGKVMEPAP--FSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHSRGRHAFYLSSGDCVRMTEGCQRDYQHCVKV--AKEDVGARISLVFKQSISGLERG 1577
            ++PF  +P    GLR+EDF  EV  +RD I L  G K + ESRLT WQS  G  F YSGK M P P   +P V ++RD L   TGV YD VL+N Y      MRYH DP  G +W+ +++VVS+GDTR F  R+  D+   R  + + +GD VRM   CQ   QHCV+V  A ED G R+SLVFK+ + G + G
Sbjct:  402 AVPFTVVPQFMPGLRLEDFMAEVRLNRDTIYLEDGSKAVEESRLTGWQSDIGATFKYSGKEMIPDPSGMTPAVRQVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYG-VWSPESAVVSIGDTRTFIFREITDYD-SRWQYRVRNGDVVRMWGDCQDRLQHCVRVERAAEDAGPRMSLVFKERLRGPDGG 593
[Close]
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Match: A0A8J5XM98_DIALT (Fe2OG dioxygenase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XM98_DIALT)

HSP 1 Score: 157 bits (398), Expect = 2.560e-39
Identity = 93/217 (42.86%), Postives = 118/217 (54.38%), Query Frame = 3 
Query: 1005 VESLPFRAIPSLFQGLRVEDFRQEVA--FSRDEILLG---GGKVLSESRLTAWQSSDGLPFSYSGKVMEP-APFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHSRGRHAFYLSSGDCVRMTEGCQRDYQHCVKVAKE--DVGARISLVFKQSISGLERGGKSAAVG*RVCPGRVLYR 1631
            + +LPFR +  +   +  E    E+     R+ I L    G +++ E+RLT WQS  G+PFSYSGK M P  P       +RD L   +G+ YD  L+NLYE     MRYH DPD GT+W+ DT V S G TR F LR+T DH+   H F L  GD V M   CQ +YQHCV+V ++  D G RISLVFKQS+                CP R  YR
Sbjct:  167 LAALPFRVLSGVCVAVPYETLEAELRPHLRRELIALRDSRGERLVPEARLTGWQSRAGVPFSYSGKSMAPNVPDGGQFAAVRDTLRALSGIEYDSCLVNLYEHGKVGMRYHQDPDQGTLWSTDTHVASFGCTRAFVLRRTADHAL-HHEFTLQHGDVVHMFGACQAEYQHCVRVERDEADAGPRISLVFKQSL----------------CPSRRTYR 366
[Close]
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Match: A0A2K3DVE4_CHLRE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DVE4_CHLRE)

HSP 1 Score: 161 bits (407), Expect = 1.100e-38
Identity = 88/190 (46.32%), Postives = 116/190 (61.05%), Query Frame = 3 
Query: 1011 SLPFRAIPSLFQGLRVEDFRQEVAFSRDEILL-GGGKVLSESRLTAWQSSDGLPFSYSGKVMEPAP--FSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHSRGRHAFYLSSGDCVRMTEGCQRDYQHCVKV--AKEDVGARISLVFKQSISG 1565
            ++PF  +P    GL+++DF  EV  +RD I L  G K + ESRLT WQS  G  F YSGK M P P   +P V ++RD L   TGV YD VL+N Y      MRYH DP  G +W+ +++VVS+GDTR F  R+  D++  R  + + +GD VRM   CQ   QHCV+V  A ED G R+SLVFK+ + G
Sbjct:  439 AVPFAVVPQFMPGLKLQDFMAEVRLNRDVIYLEDGSKAVEESRLTGWQSDIGATFKYSGKEMVPDPSGMTPAVRKVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYG-VWSPESAVVSIGDTRTFIFREISDYN-SRWQYRVRNGDVVRMWGDCQDRLQHCVRVERAAEDAGPRMSLVFKERLRG 626
[Close]
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Match: A0A835TLQ1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TLQ1_CHLIN)

HSP 1 Score: 160 bits (406), Expect = 1.210e-37
Identity = 90/190 (47.37%), Postives = 114/190 (60.00%), Query Frame = 3 
Query: 1011 SLPFRAIPSLFQGLRVEDFRQEVAFSRDEILL-GGGKVLSESRLTAWQSSDGLPFSYSGKVMEPAP--FSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHSRGRHAFYLSSGDCVRMTEGCQRDYQHCVKV--AKEDVGARISLVFKQSISG 1565
            ++PF  +P    GLR+EDF  EVA +RD I L  G K + ESRLT WQS     F YSGK M P P   +P V ++RD L   TGV YD VL+N Y      MRYH DP  G +W+ +++VVSVGDTR F  R+  D+   R  + + +GD VRM   CQ   QHCV+V  A  D G R+SLVFK+ + G
Sbjct:  824 AVPFAVVPQFMPGLRLEDFMAEVALNRDVIYLEDGSKAVEESRLTGWQSDIAATFKYSGKEMIPDPSGMTPAVRKVRDELQRLTGVWYDSVLINYYGDGKCGMRYHVDPLYG-VWSPESAVVSVGDTRTFIFREIADYD-SRWQYRVRNGDVVRMWGDCQDRLQHCVRVERAAADAGPRMSLVFKERLRG 1011
[Close]
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Match: C1ECW3_MICCC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1ECW3_MICCC)

HSP 1 Score: 157 bits (397), Expect = 1.280e-37
Identity = 90/231 (38.96%), Postives = 125/231 (54.11%), Query Frame = 3 
Query:  978 RAARELRRRVESLPFRAIPSLFQG------------------------LRVEDFRQEVAFSRDEILLGGGKVLSESRLTAWQSSDGLP-FSYSGKVMEPAPFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHSRGRHAFYLSSGDCVRMTEGCQRDYQHCVKVAK----EDVGARISLVFKQSISGLERGGK 1583
            RA   ++R  E LPF+ +P L                           L VE    EV F  ++++   GK + E R T W + DG+   +YSGKVM PAPF+P V +LRDA+   TG  +D  LLNLY     A +YH DPD+G +W +D+ +VSVG+TR F+ R+        H F L SGDCV M   C  D++HCV  A+    E+ G R S+VFK++++G  RGG+
Sbjct:  284 RAGDVIKRPAEGLPFKILPDLATSSGTPRGEFGDSGISDLDFLDLDFSLTVEALAAEVPFRAEKLVTRDGKRVDERRETCWMAEDGIGGLAYSGKVMSPAPFTPTVRKLRDAIEASTGERFDCALLNLYPGGDVACKYHRDPDLGLLWARDSIIVSVGETRRFAFRELGKKEDEAHWFRLRSGDCVWMFANCNDDWEHCVMRAEGAAGENDGPRASVVFKRALTG--RGGR 512
[Close]
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Match: B5Y543_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y543_PHATC)

HSP 1 Score: 146 bits (369), Expect = 3.770e-35
Identity = 83/188 (44.15%), Postives = 107/188 (56.91%), Query Frame = 3 
Query: 1011 SLPFRAIPSLFQGLR---VEDFRQEVAFSRDEILLGGGKVLSESRLTAWQSSDGL-PFSYSGKVMEPAPFSPNVLRLRDALYERTGVLYDGVLLNLYESRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHSRGRHAFYLSSGDCVRMTEGCQRDYQHCVKVA--KEDVGARISLVFKQS 1556
            +LPF  IP    GL    V+    +V F  D+I     KV+SE R TAW+   G+ PF+YSGK M  + +SP V+++RD +  RT   Y+G LLNLY    S MRYH DPD GT+W  DT+VVSVG +R F+ R     +   H F +  GD   M   CQ  +QH VK A  K D   R SLVFK++
Sbjct:  192 NLPFAIIPGCLAGLESLSVDRLTSQVHFRVDDIRTTSNKVVSERRQTAWEGDTGVAPFTYSGKAMPRSDWSPLVVQVRDVVQARTNQYYNGCLLNLYTDGCSGMRYHIDPDQGTLWDYDTAVVSVGASRRFAFRAMSSSTLQPHNFVVMHGDLTYMFGECQSQFQHTVKKADDKTDTTPRASLVFKRT 379
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1079.1053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTC5_ECTSI3.490e-19369.30Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A836CIU8_9STRA2.550e-6141.80Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6T6VXL3_9EUKA2.140e-4947.14Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S3Z587_9EUKA5.660e-4744.34Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A835WWM2_9CHLO6.080e-4046.91Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A8J5XM98_DIALT2.560e-3942.86Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A2K3DVE4_CHLRE1.100e-3846.32Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A835TLQ1_CHLIN1.210e-3747.37Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
C1ECW3_MICCC1.280e-3738.96Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
B5Y543_PHATC3.770e-3544.15Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1079contigS-firma_F_contig1079:9347..13150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LTC5
PFAMs2OG-FeII_Oxy_2
Max annot lvl2759|Eukaryota
KEGG koko:K10859
Evalue4.71e-195
EggNOG OGs2DH22@1|root,2S5VN@2759|Eukaryota
EC1.14.11.33
Description2OG-Fe(II) oxygenase superfamily
COG categoryS
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionAlpha-ketoglutarate-dependent dioxygenase AlkB-like
Ec32 orthologEc-12_006050.1
Exons5
Model size1806
Cds size1509
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.6562083-UTR-S-firma_F_contig1079:9346..95511622815620.6562083-UTR-S-firma_F_contig1079:9346..9551Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1079 9347..9551 -
1696949458.9988306-UTR-S-firma_F_contig1079:9346..95511696949458.9988306-UTR-S-firma_F_contig1079:9346..9551Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1079 9347..9551 -
1622815620.740604-UTR-S-firma_F_contig1079:13058..131501622815620.740604-UTR-S-firma_F_contig1079:13058..13150Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1079 13059..13150 -
1696949459.0598524-UTR-S-firma_F_contig1079:13058..131501696949459.0598524-UTR-S-firma_F_contig1079:13058..13150Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1079 13059..13150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.6720905-CDS-S-firma_F_contig1079:9551..98551622815620.6720905-CDS-S-firma_F_contig1079:9551..9855Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 9552..9855 -
1696949459.0110242-CDS-S-firma_F_contig1079:9551..98551696949459.0110242-CDS-S-firma_F_contig1079:9551..9855Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 9552..9855 -
1622815620.687145-CDS-S-firma_F_contig1079:10478..106571622815620.687145-CDS-S-firma_F_contig1079:10478..10657Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 10479..10657 -
1696949459.0194716-CDS-S-firma_F_contig1079:10478..106571696949459.0194716-CDS-S-firma_F_contig1079:10478..10657Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 10479..10657 -
1622815620.6991544-CDS-S-firma_F_contig1079:11118..111901622815620.6991544-CDS-S-firma_F_contig1079:11118..11190Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 11119..11190 -
1696949459.0289629-CDS-S-firma_F_contig1079:11118..111901696949459.0289629-CDS-S-firma_F_contig1079:11118..11190Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 11119..11190 -
1622815620.713813-CDS-S-firma_F_contig1079:11673..122401622815620.713813-CDS-S-firma_F_contig1079:11673..12240Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 11674..12240 -
1696949459.0379534-CDS-S-firma_F_contig1079:11673..122401696949459.0379534-CDS-S-firma_F_contig1079:11673..12240Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 11674..12240 -
1622815620.7275393-CDS-S-firma_F_contig1079:12671..130581622815620.7275393-CDS-S-firma_F_contig1079:12671..13058Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 12672..13058 -
1696949459.049434-CDS-S-firma_F_contig1079:12671..130581696949459.049434-CDS-S-firma_F_contig1079:12671..13058Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1079 12672..13058 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1079.1053.1prot_S-firma_F_contig1079.1053.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1079 9552..13058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1079.1053.1

>prot_S-firma_F_contig1079.1053.1 ID=prot_S-firma_F_contig1079.1053.1|Name=mRNA_S-firma_F_contig1079.1053.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=503bp
MTPHTYLLAFLIGSAITRSPALSAQPPITKHVIGGKYDTGSSPLTRMQAR
RGGKGRRRGRTADGRPSSGPRAYEGAGTVPVKESPSTAAATAALAVQHAA
HHELLEVAHSHKAVLRPGVLSQALLRIAKPLVQVAQAPAREELLTDPRLA
AVFMAASSPVAAGDEPKVPAATGQALSGPQAADIVWALGLLQWRPPGGVG
RRRLAQLVELVAQAASSKRGIEEGYITNVLWALERLHVETFAPTTEAARA
TEQAEAWRVVETTKGTAGEESLATTAVGVGGVGEGEAGDTAWEGSRAARE
LRRRVESLPFRAIPSLFQGLRVEDFRQEVAFSRDEILLGGGKVLSESRLT
AWQSSDGLPFSYSGKVMEPAPFSPNVLRLRDALYERTGVLYDGVLLNLYE
SRSSAMRYHSDPDVGTIWTQDTSVVSVGDTRLFSLRQTLDHSRGRHAFYL
SSGDCVRMTEGCQRDYQHCVKVAKEDVGARISLVFKQSISGLERGGKSAA
VG*
back to top

mRNA from alignment at S-firma_F_contig1079:9347..13150-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1079.1053.1 ID=mRNA_S-firma_F_contig1079.1053.1|Name=mRNA_S-firma_F_contig1079.1053.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3804bp|location=Sequence derived from alignment at S-firma_F_contig1079:9347..13150- (Sphaerotrichia firma ET2_F female)
CCAAGGTCGGGTCTCCGACAGGTCTCCAACCAACGAGATGCACACCGCTC
TGAGCTCCGTGTGAGCTGTGTGTGCACACGACAGAGGACAGGATGACCCC
CCACACCTACTTGCTCGCCTTTCTCATCGGCTCAGCAATAACACGTTCCC
CGGCGCTCTCAGCACAGCCTCCAATAACCAAACATGTCATCGGTGGCAAG
TACGACACAGGTTCATCGCCGTTAACTAGGATGCAAGCTCGACGTGGAGG
AAAGGGGCGACGAAGAGGGAGAACAGCGGACGGACGACCTTCTTCCGGGC
CTCGTGCCTATGAAGGTGCAGGTACTGTGCCCGTCAAAGAGTCCCCGTCC
ACCGCTGCCGCGACTGCTGCTCTGGCTGTCCAGCATGCTGCCCACCATGA
GCTTCTGGAAGTCGCACACTCCCACAAGGCGGTGCTAAGGCCTGGTGTGC
TTTCTCAGGCGCTCTTACGGATAGCCAAGGTGTGTCATGTGGCCTCGTGC
CCTCCGATGAGAGTTTGTTTCAACTTGCGTGCGGCCGGGCGGTTGTTTTT
TTCACCCCCACTTCCCTTGGAACCCCTTGGAACCCTGCTTTATTTTTGCC
AACATCGCTGCTGCTGCTGCGTTCCACCGACATCGATCATCTCACGCCAT
CCCGCCATAGGTTTAGAATGACAAAACAGCAGTAGCAGTGATCGATCGTT
GTACATTCCCGCCGCCCGTCTCGAGGGGCAGTGAACGATTGTCTTGGGTG
GTCTGGAGCAAGGTTGTTGTCGCGATCGAAGACTGCTGTGTGTGTGGCAC
TTCAACTTTCGCCCGGGCCCAATAGCGCGTGAAGGGCTCCGCGACTGCTG
TATGATATCATACTGACGGACTTGGACCACCCTCCTCCATTTCATACGCA
CTGCACGCAGCCTCTCGTCCAGGTCGCACAAGCGCCGGCGAGGGAAGAAC
TTCTCACGGATCCACGACTTGCGGCCGTTTTCATGGCAGCATCCTCTCCG
GTCGCAGCGGGAGACGAGCCGAAAGTACCGGCGGCAACCGGCCAAGCTCT
CTCAGGGCCTCAGGCGGCCGACATCGTGTGGGCGCTGGGTTTGCTCCAAT
GGCGCCCTCCCGGTGGTGTTGGTCGCCGCCGTCTCGCCCAGCTCGTAGAG
CTCGTGGCCCAAGCAGCCTCTTCGAAGAGGGGTATCGAAGAGGGTTACAT
CACGAACGTCTTGTGGGCGCTCGAGCGACTACACGTAGAGACTTTCGCGC
CGACGACGGAGGCGGCAAGAGCAACGGAACAGGCCGAGGCGTGGAGGGTG
GTAGAGACCACGAAAGGGACGGCGGGAGAAGAGTCGCTTGCCACGACGGC
GGTGGGGGTGGGCGGTGTGGGCGAGGGGGAGGCGGGCGACACTGCCTGGG
AAGGGAGCCGGGCGGCGAGGGAGCTTCGACGTAGGGTGGAAAGCCTACCT
TTTCGAGCGATCCCGTCGCTGTTCCAGGTATGTACGTGCGTGGTCAATGT
ACTAGGGTTGTGAATCGGTGGGAATTTCCGAGGCGAAAGGGCTGGTTGAT
CGGCGCAAAAAGCGGCCCTTTCCGGGAGGCGGCGCCGTAGGCCGTAGGCG
GAAGCTTTTATTCAGGTTTTCGGCCTTTTGCCTTACAAAACTTCCCCGCA
CAACCTGTGCGCTTTTTTTTTTTCGACGCAACAGCAGCTAAAAGTGGTAG
ACTAGAGACTATGCGAGTGAATCAGTGCCAAACGCAAAACAAGATCACAC
GACACTGAGTATATCTGACCAGAGGCGGTGCATGCAGGCCTCAGAACATG
GCGAGGACCAGACTAGCTTCGGGTTTCAAAGAACCCGCGGAAATGTTGAT
GATTAGGACAAGGGACATGCGTCCTCTTGCCCGGTCAAGGTAAGGGTTGG
GGCCGATTTACTTACGAGACTCATTAGACTGCGCTTTGTGTGGGTGGTGG
ACTATTCCAGGGCCTGCGCGTAGAAGATTTCAGGCAAGAGGTGGCGTTCA
GCAGGGACGAGATTCTTCTTGGGGGTGGAAAGGTGAGCTGTCTCTGTCTC
TTGAGTTGCGTATGATATTCATCCGCCACCTCGGGGTATGCGCTCGGCGA
TGTATCCTAGCTACTGAGCAACAAAGTGCAAAGGTACACCTTCTTTGTCG
GCTCCGAAGCGAACCGCGGCTTGGACTAGCATCAGGTGGCCGTGGTGACT
TCGGCGAAATATTCTGCAGAGATGAGGAGACTGAGCGGCAACACGAGCCT
CTCTCGGCGTACTGTAGAATGTCGCTCGCGTCATGACTTGATTTTACTCC
CGAGAAGCGTCACTGGCACCGTGACGCAAACTCTGCTTGCATAACAATTC
AGTTGACCAGGAGGGTTGGCGCCTGCTTGGCAACTACACCTGCTGTCTGA
CACCCCCACCTTGAACTGCCGGCGACTCGAAAGTCGTGGTTTACACCCTT
GAATTTCTTTCCTAATCCTCACTCGGCCTTGCTGGCGGGGCAGGTGCTCT
CCGAGTCCAGGCTTACCGCGTGGCAGAGCAGCGACGGTCTCCCCTTCTCC
TACAGCGGGAAGGTCATGGAGCCCGCACCGTTCTCGCCAAACGTGCTCCG
CCTCCGTGACGCCTTGTACGAGAGGACCGGCGTGCTTTACGACGGGGTAC
TTCTGAACCTTTACGAGTCCAGGTGTGTGGGTGTGTTCTGTTTGTGTTGG
CGTTATTTTGTTCATGACGCAGACGAAAGGGCGGTCGTGGTGCGTACGAG
TGCGCACGCCACGAGAACAACACCACACAGAGAGAGAGAGAGAGAGAGAG
GTGTTGTCGCTCATGTTGAGTCCACAATAGAGTAGAAAGCCCGAAACATG
CGTGTGCTTCCTGAGCTTGGTTTTTCTTGAAGGTCGAGCGTCGAGTCACT
GGCGTTCTGAGCTGGAAACCAGTCTACTTTTTTGCTCTCGCGTACTTGGT
GGAAAAATTTCGTCCTGAGGGTTAACTACTGATAACAACGATTTGCTTGT
CCCGGGGCAGCAAGAGCAAGCGTGTGTGATGGCTTGGTTTCGCTTGCGCA
CGCACGTACATGCAGCCCGACAGCGTCGCGTCCACCACGACCTAGCCGCG
CAGTTCCAATCTTGGTGACTCCATCTCCCGGCACCCACCGGAACCGGACC
AGAGTTTAGCAGCACAGGCACGCGCACCGAACAGACGCCGGACACGACCT
TTGACCCCTTTCGCCCTAGGCTGAACAACCCCTTTCCCGCCTCCCTCTGC
GCCTTGTGGTGGCGCGGGGGGGGCGTGACCAACGACGCGAGACAGGTCGA
GCGCCATGCGTTACCACTCCGACCCCGACGTTGGGACGATCTGGACGCAG
GATACGTCGGTGGTAAGCGTGGGAGATACCCGGCTGTTCTCGCTGCGCCA
GACCTTGGACCACTCTCGCGGGCGTCACGCCTTCTACCTGTCCAGCGGGG
ACTGCGTGAGGATGACGGAGGGGTGCCAGCGGGACTACCAGCACTGCGTG
AAAGTCGCCAAGGAGGACGTGGGCGCCAGGATTTCGCTCGTGTTCAAGCA
GAGCATCTCGGGTCTGGAACGCGGGGGAAAAAGCGCTGCTGTCGGTTAGA
GGGTGTGTCCGGGCCGTGTATTGTACCGCAGACAGCGGTATTGCGCTTTT
CGCGAAGGAAAGGAGGAAGGCGCTTGTTTGCCAAAGGCAGCGATTGCGCG
GCACGTGGTTGTTGTGTGTTGTGTGTTGAATCGACTTGGTTTGGTTTTTG
ATGCCAATCTTCTCCGCGGTGGAATTCGACAAGTGAAGCAGAACGTCCGA
CCGT
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1079:9347..13150-

>mRNA_S-firma_F_contig1079.1053.1 ID=mRNA_S-firma_F_contig1079.1053.1|Name=mRNA_S-firma_F_contig1079.1053.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3018bp|location=Sequence derived from alignment at S-firma_F_contig1079:9347..13150- (Sphaerotrichia firma ET2_F female)
ATGACCCCCCACACCTACTTGCTCGCCTTTCTCATCGGCTCAGCAATAAC
ACGTTCCCCGGCGCTCTCAGCACAGCCTCCAATAACCAAACATGTCATCG
GTGGCAAGTACGACACAGGTTCATCGCCGTTAACTAGGATGCAAGCTCGA
CGTGGAGGAAAGGGGCGACGAAGAGGGAGAACAGCGGACGGACGACCTTC
TTCCGGGCCTCGTGCCTATGAAGGTGCAGGTACTGTGCCCGTCAAAGAGT
CCCCGTCCACCGCTGCCGCGACTGCTGCTCTGGCTGTCCAGCATGCTGCC
CACCATGAGCTTCTGGAAGTCGCACACTCCCACAAGGCGGTGCTAAGGCC
TGGTGTGCTTTCTCAGGCGCTCTTACGGATAGCCAAGATGACCCCCCACA
CCTACTTGCTCGCCTTTCTCATCGGCTCAGCAATAACACGTTCCCCGGCG
CTCTCAGCACAGCCTCCAATAACCAAACATGTCATCGGTGGCAAGTACGA
CACAGGTTCATCGCCGTTAACTAGGATGCAAGCTCGACGTGGAGGAAAGG
GGCGACGAAGAGGGAGAACAGCGGACGGACGACCTTCTTCCGGGCCTCGT
GCCTATGAAGGTGCAGGTACTGTGCCCGTCAAAGAGTCCCCGTCCACCGC
TGCCGCGACTGCTGCTCTGGCTGTCCAGCATGCTGCCCACCATGAGCTTC
TGGAAGTCGCACACTCCCACAAGGCGGTGCTAAGGCCTGGTGTGCTTTCT
CAGGCGCTCTTACGGATAGCCAAGCCTCTCGTCCAGGTCGCACAAGCGCC
GGCGAGGGAAGAACTTCTCACGGATCCACGACTTGCGGCCGTTTTCATGG
CAGCATCCTCTCCGGTCGCAGCGGGAGACGAGCCGAAAGTACCGGCGGCA
ACCGGCCAAGCTCTCTCAGGGCCTCAGGCGGCCGACATCGTGTGGGCGCT
GGGTTTGCTCCAATGGCGCCCTCCCGGTGGTGTTGGTCGCCGCCGTCTCG
CCCAGCTCGTAGAGCTCGTGGCCCAAGCAGCCTCTTCGAAGAGGGGTATC
GAAGAGGGTTACATCACGAACGTCTTGTGGGCGCTCGAGCGACTACACGT
AGAGACTTTCGCGCCGACGACGGAGGCGGCAAGAGCAACGGAACAGGCCG
AGGCGTGGAGGGTGGTAGAGACCACGAAAGGGACGGCGGGAGAAGAGTCG
CTTGCCACGACGGCGGTGGGGGTGGGCGGTGTGGGCGAGGGGGAGGCGGG
CGACACTGCCTGGGAAGGGAGCCGGGCGGCGAGGGAGCTTCGACGTAGGG
TGGAAAGCCTACCTTTTCGAGCGATCCCGTCGCTGTTCCAGCCTCTCGTC
CAGGTCGCACAAGCGCCGGCGAGGGAAGAACTTCTCACGGATCCACGACT
TGCGGCCGTTTTCATGGCAGCATCCTCTCCGGTCGCAGCGGGAGACGAGC
CGAAAGTACCGGCGGCAACCGGCCAAGCTCTCTCAGGGCCTCAGGCGGCC
GACATCGTGTGGGCGCTGGGTTTGCTCCAATGGCGCCCTCCCGGTGGTGT
TGGTCGCCGCCGTCTCGCCCAGCTCGTAGAGCTCGTGGCCCAAGCAGCCT
CTTCGAAGAGGGGTATCGAAGAGGGTTACATCACGAACGTCTTGTGGGCG
CTCGAGCGACTACACGTAGAGACTTTCGCGCCGACGACGGAGGCGGCAAG
AGCAACGGAACAGGCCGAGGCGTGGAGGGTGGTAGAGACCACGAAAGGGA
CGGCGGGAGAAGAGTCGCTTGCCACGACGGCGGTGGGGGTGGGCGGTGTG
GGCGAGGGGGAGGCGGGCGACACTGCCTGGGAAGGGAGCCGGGCGGCGAG
GGAGCTTCGACGTAGGGTGGAAAGCCTACCTTTTCGAGCGATCCCGTCGC
TGTTCCAGGGCCTGCGCGTAGAAGATTTCAGGCAAGAGGTGGCGTTCAGC
AGGGACGAGATTCTTCTTGGGGGTGGAAAGGGCCTGCGCGTAGAAGATTT
CAGGCAAGAGGTGGCGTTCAGCAGGGACGAGATTCTTCTTGGGGGTGGAA
AGGTGCTCTCCGAGTCCAGGCTTACCGCGTGGCAGAGCAGCGACGGTCTC
CCCTTCTCCTACAGCGGGAAGGTCATGGAGCCCGCACCGTTCTCGCCAAA
CGTGCTCCGCCTCCGTGACGCCTTGTACGAGAGGACCGGCGTGCTTTACG
ACGGGGTACTTCTGAACCTTTACGAGTCCAGGTGCTCTCCGAGTCCAGGC
TTACCGCGTGGCAGAGCAGCGACGGTCTCCCCTTCTCCTACAGCGGGAAG
GTCATGGAGCCCGCACCGTTCTCGCCAAACGTGCTCCGCCTCCGTGACGC
CTTGTACGAGAGGACCGGCGTGCTTTACGACGGGGTACTTCTGAACCTTT
ACGAGTCCAGGTCGAGCGCCATGCGTTACCACTCCGACCCCGACGTTGGG
ACGATCTGGACGCAGGATACGTCGGTGGTAAGCGTGGGAGATACCCGGCT
GTTCTCGCTGCGCCAGACCTTGGACCACTCTCGCGGGCGTCACGCCTTCT
ACCTGTCCAGCGGGGACTGCGTGAGGATGACGGAGGGGTGCCAGCGGGAC
TACCAGCACTGCGTGAAAGTCGCCAAGGAGGACGTGGGCGCCAGGATTTC
GCTCGTGTTCAAGCAGAGCATCTCGGGTCTGGAACGCGGGGGAAAAAGCG
CTGCTGTCGGTTAGGTCGAGCGCCATGCGTTACCACTCCGACCCCGACGT
TGGGACGATCTGGACGCAGGATACGTCGGTGGTAAGCGTGGGAGATACCC
GGCTGTTCTCGCTGCGCCAGACCTTGGACCACTCTCGCGGGCGTCACGCC
TTCTACCTGTCCAGCGGGGACTGCGTGAGGATGACGGAGGGGTGCCAGCG
GGACTACCAGCACTGCGTGAAAGTCGCCAAGGAGGACGTGGGCGCCAGGA
TTTCGCTCGTGTTCAAGCAGAGCATCTCGGGTCTGGAACGCGGGGGAAAA
AGCGCTGCTGTCGGTTAG
back to top