mRNA_S-firma_F_contig10788.1049.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Match: A0A660PN84_9BACT (Fibronectin type-III domain-containing protein (Fragment) n=2 Tax=cellular organisms TaxID=131567 RepID=A0A660PN84_9BACT) HSP 1 Score: 117 bits (293), Expect = 8.760e-27 Identity = 72/195 (36.92%), Postives = 108/195 (55.38%), Query Frame = 1
Query: 34 GADWETIAFTATYTEPVIVCTPLYASSLNYFVPRLRNVGSTSFEVRAQYTGGVPPSSEDNRNNGPSVPGVDLSCMVVEAGSYD--EDGVKLEAGTFTSTFASFKFNFGVDHVVTLQNTYSEPPAVVAQIMSSDEDLFQVAFVSDATSGSNAHTASSIAIGRQVGEDPVTSRGSETVGYIVMEQGTGSVNGIPYEA 612
G+ W + + +YT PV+V Y ++ + V R+RN +SF+VR GG PS G+D+ MVVE G Y DGVK+EA T+ ST + N V T N+Y+ P V+ Q+M+ ++ F + D +S +A++++ G+ V EDPVT+R +ETVGYIV+E G+GS+ G Y A
Sbjct: 95 GSSWTNVTLSQSYTSPVVVAVANYDNTSDPAVVRIRNAAGSSFDVRVDAAGGTTPS------------GIDVHYMVVEEGVYTVANDGVKMEAVTYNSTVTD-ENNSWVGQPQTYSNSYTSP-VVLGQVMTYNDPAFSTFWCYDGSSKGTPPSATTLSTGKTVSEDPVTTRANETVGYIVIEAGSGSMAGTNYVA 275
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Match: UPI000A065F93 (T9SS type A sorting domain-containing protein n=1 Tax=Lewinella persica TaxID=70998 RepID=UPI000A065F93) HSP 1 Score: 116 bits (291), Expect = 1.720e-26 Identity = 82/215 (38.14%), Postives = 119/215 (55.35%), Query Frame = 1
Query: 1 IPLERHTFRTTGADWETIAFTATYTEPVIVCTPLYAS-SLNYFVPRLRNVGSTSFEVRAQYTGGVPPSSEDNRNNGPSVPGVDLSCMVVEAGSYDED--GVKLEAGTFTSTFASFKFNFGVDHVV--TLQNTYSEPPAVVAQIMSSDEDLFQVAFVSDATSGSNAHTASSIAIGRQVGEDPVTSRGSETVGYIVMEQGTGSVNGIPYEAVVVEDV 630
I ER TTG W+T+ + YT PV++ TP+ S SL+ V R+RN G+ SF++RAQ G N N+ D+ VVE G YD GVK+EA TST + + +G ++ + QN Y P V+ Q+MS ++ F V + S + S SNA T SS A G+ V ED +R +E++GY+V+E G+G++NG Y V D+
Sbjct: 1563 IVFERGRISTTGDGWQTVQLSNQYTNPVVIATPVITSTSLDPVVARVRNAGANSFQIRAQRPGA-------NTNDT-----YDIEYFVVEEGVYDFPTYGVKMEAVLTTSTRTAARSRWGSNYRENRSYQNAYLNP-VVLGQVMSQNDADFSVFWASRSNSQSNAPTPSSFAAGKHVAEDNDRTRSNESLGYVVIEAGSGTINGEEYVTGVGSDI 1764
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Match: A0A851GCY6_9BACT (Cadherin repeat domain-containing protein n=1 Tax=Oceaniferula marina TaxID=2748318 RepID=A0A851GCY6_9BACT) HSP 1 Score: 113 bits (283), Expect = 1.750e-25 Identity = 77/202 (38.12%), Postives = 117/202 (57.92%), Query Frame = 1
Query: 34 GADWETIAFTATYTEPVIVCTPLYASSLNY-FVPRLRNVGSTSFEVRAQYTGGVPPSSEDNRNNGPSVPGVDLSCMVVEAGSYDE--DGVKLEAGTFTSTFASFKFNFGVDHVVTLQNTYSEPPAVVAQIMSSDEDLFQVAFVSDATSGSNAHTASSIAIGRQVGEDPVTSRGSETVGYIVMEQGTGSVNGIPYEAVVVEDV 630
++W T+ YT VIV TP+Y S V R++NV +SF+++ G+ +SE N +D+S + VE G Y + DGV +EA FTST + K N+ + + QN+Y+ P VV Q+MS+++ + V F S S + A S+++G+ VGED T+R ET+GYIV+E GTG++NGI YEA + D+
Sbjct: 481 SSNWTTVDLGKNYTSAVIVATPIYPDSNRPPVVTRIKNVSGSSFDLKLDRCDGL--TSEVN---------LDVSIIAVEEGVYTQALDGVTMEAVKFTSTVTARKNNWNAE-AQSFQNSYTSP-VVVGQVMSANDSHWSV-FWSMGGSRTTPVNAGSLSLGKHVGEDSNTTRADETIGYIVIESGTGTINGIAYEAGLGSDI 668
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Match: A0A851GEE0_9BACT (Cadherin domain-containing protein n=1 Tax=Oceaniferula marina TaxID=2748318 RepID=A0A851GEE0_9BACT) HSP 1 Score: 112 bits (281), Expect = 3.860e-25 Identity = 74/196 (37.76%), Postives = 114/196 (58.16%), Query Frame = 1
Query: 34 GADWETIAFTATYTEPVIVCTPLYASSLNY-FVPRLRNVGSTSFEVRAQYTGGVPPSSEDNRNNGPSVPGVDLSCMVVEAGSYDE--DGVKLEAGTFTSTFASFKFNFGVDHVVTLQNTYSEPPAVVAQIMSSDEDLFQVAFVSDATSGSNAHTASSIAIGRQVGEDPVTSRGSETVGYIVMEQGTGSVNGIPYEA 612
++W T+ +Y VIV TP+Y S V R+RNVG +SFE++ G+ + +D+S + VE G Y + DGV +EA +TST + N+ V + QN+Y+ P VV Q+MS+++ + V F S +S + +AS + +G+ VGEDP T+R +ET+GYIV+E G+GS+NG+ YEA
Sbjct: 3197 SSNWTTVDLGQSYNSAVIVATPVYDGSTQVPVVTRIRNVGGSSFELKLDRADGLTTALS-----------MDVSVIAVEEGVYTQSTDGVAMEAVKYTSTVTADNNNW-VGESRSYQNSYTNP-VVVGQVMSANDANWSV-FWSMGSSRTAPASASVLNVGKHVGEDPNTARANETIGYIVIESGSGSINGVAYEA 3378
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Match: UPI001907F03A (cadherin domain-containing protein n=1 Tax=Haloferula rosea TaxID=490093 RepID=UPI001907F03A) HSP 1 Score: 111 bits (277), Expect = 1.300e-24 Identity = 71/193 (36.79%), Postives = 114/193 (59.07%), Query Frame = 1
Query: 43 WETIAFTATYTEPVIVCTPLYAS-SLNYFVPRLRNVGSTSFEVRAQYTGGVPPSSEDNRNNGPSVPGVDLSCMVVEAGSYD--EDGVKLEAGTFTSTFASFKFNFGVDHVVTLQNTYSEPPAVVAQIMSSDEDLFQVAFVSDATSGSNAHTASSIAIGRQVGEDPVTSRGSETVGYIVMEQGTGSVNGIPYEA 612
W T+A Y PVI+ TP+Y + SL V R+RN+ + F+++ G ++ +D+S +VVE G Y E GVK+EA T+ ST + N+ V+ + QN Y+ P VV Q+MS+++ + V + AT S A++ S++ +G+ VGEDP +R +ET+GY+V+E GTG+++G+ YEA
Sbjct: 2301 WTTVALGQNYNSPVIIATPIYPNTSLPPVVTRIRNITAGGFDIKLDRADGQTAATS-----------LDVSVVVVEEGVYTVAEHGVKMEAVTYNSTVTAENNNWAVESR-SYQNAYTNP-VVVGQVMSANDAGWSVFWSQGATRQSPANS-SNLNVGKHVGEDPDATRVAETIGYLVIESGTGTIDGVAYEA 2479
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Match: A0A851GBL9_9BACT (Cadherin domain-containing protein n=1 Tax=Oceaniferula marina TaxID=2748318 RepID=A0A851GBL9_9BACT) HSP 1 Score: 110 bits (274), Expect = 3.280e-24 Identity = 71/197 (36.04%), Postives = 110/197 (55.84%), Query Frame = 1
Query: 31 TGADWETIAFTATYTEPVIVCTPLYASSLNY-FVPRLRNVGSTSFEVRAQYTGGVPPSSEDNRNNGPSVPGVDLSCMVVEAGSYDE--DGVKLEAGTFTSTFASFKFNFGVDHVVTLQNTYSEPPAVVAQIMSSDEDLFQVAFVSDATSGSNAHTASSIAIGRQVGEDPVTSRGSETVGYIVMEQGTGSVNGIPYEA 612
T W T+ +Y VI+ TP+Y + V R+ NV +SF+++ G+ + +D+S + VE G Y + DGV +EA +TST + N V T QNTY+ P VV Q+MS+++ + V F S S + +AS++ +G+ VGEDP T+R +ET+GYIV+E G+G++NG+ YEA
Sbjct: 2302 TNGSWTTVNLGQSYNSAVIIATPIYPDTTTAPVVTRITNVSGSSFDLKVDRADGLSDAMT-----------IDVSIIAVEEGVYTQATDGVTMEAVKYTSTVTADN-NSWVGEAQTYQNTYTAP-VVVGQVMSANDANWSV-FWSMGNSRTVPASASALNVGKHVGEDPNTTRANETIGYIVIESGSGTINGVAYEA 2484
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Match: A0A851GBZ3_9BACT (Cadherin domain-containing protein n=1 Tax=Oceaniferula marina TaxID=2748318 RepID=A0A851GBZ3_9BACT) HSP 1 Score: 107 bits (267), Expect = 2.800e-23 Identity = 70/196 (35.71%), Postives = 110/196 (56.12%), Query Frame = 1
Query: 34 GADWETIAFTATYTEPVIVCTPLYASSLNY-FVPRLRNVGSTSFEVRAQYTGGVPPSSEDNRNNGPSVPGVDLSCMVVEAGSYDE--DGVKLEAGTFTSTFASFKFNFGVDHVVTLQNTYSEPPAVVAQIMSSDEDLFQVAFVSDATSGSNAHTASSIAIGRQVGEDPVTSRGSETVGYIVMEQGTGSVNGIPYEA 612
+ W T+ YT VI+ TP+Y ++ V R+ NV SF+++ G+ + +D+S + VE G Y + DGV +EA +TST S + N V T QN+Y+ P VV Q+MS+++ + V F S +S + AS++ +G+ VGEDP T+R +ET+ YIV+E G+G++NG+ YEA
Sbjct: 2027 NSSWTTVNLGQNYTSAVIIATPIYPNTTTPPVVTRITNVSGGSFDLKVDRADGLTDAMT-----------IDVSVIAVEEGVYTQATDGVTMEAVKYTSTVTS-ENNSWVGEAQTYQNSYTSP-VVVGQVMSANDANWSV-FWSMGSSRTAPADASTLNVGKHVGEDPNTTRANETIAYIVIESGSGTINGVAYEA 2208
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Match: A0A851GCI7_9BACT (Cadherin domain-containing protein n=1 Tax=Oceaniferula marina TaxID=2748318 RepID=A0A851GCI7_9BACT) HSP 1 Score: 107 bits (266), Expect = 3.850e-23 Identity = 73/196 (37.24%), Postives = 109/196 (55.61%), Query Frame = 1
Query: 34 GADWETIAFTATYTEPVIVCTPLY-ASSLNYFVPRLRNVGSTSFEVRAQYTGGVPPSSEDNRNNGPSVPGVDLSCMVVEAGSYDE--DGVKLEAGTFTSTFASFKFNFGVDHVVTLQNTYSEPPAVVAQIMSSDEDLFQVAFVSDATSGSNAHTASSIAIGRQVGEDPVTSRGSETVGYIVMEQGTGSVNGIPYEA 612
+ W ++ Y VIV TP+Y +S V R+ NV + F+++ G+ + VD+S + VE G Y + DGV +EA +TST + + N V T QNTY+ P VV Q+MS+++ + V F S S + +AS++ +G+ VGEDP TSR +ETVGYIV+E G+G +NG+ YEA
Sbjct: 2433 NSSWTSVDLGKNYNSAVIVATPIYDGTSQIPVVTRITNVSGSGFDLKIDRVDGLSTAHS-----------VDVSIIAVEEGVYTQATDGVTMEAVKYTSTVTA-ENNSWVGESKTYQNTYTSP-VVVGQVMSANDANWSV-FWSMGNSRTAPASASALNVGKHVGEDPNTSRANETVGYIVIESGSGVINGVAYEA 2614
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Match: A0A7T7F2H8_9BACT (Cadherin domain-containing protein n=1 Tax=Sulfuriroseicoccus oceanibius TaxID=2707525 RepID=A0A7T7F2H8_9BACT) HSP 1 Score: 106 bits (265), Expect = 5.260e-23 Identity = 71/196 (36.22%), Postives = 107/196 (54.59%), Query Frame = 1
Query: 34 GADWETIAFTATYTEPVIVCTPLYAS-SLNYFVPRLRNVGSTSFEVRAQYTGGVPPSSEDNRNNGPSVPGVDLSCMVVEAGSYDE--DGVKLEAGTFTSTFASFKFNFGVDHVVTLQNTYSEPPAVVAQIMSSDEDLFQVAFVSDATSGSNAHTASSIAIGRQVGEDPVTSRGSETVGYIVMEQGTGSVNGIPYEA 612
+ W T+ +Y VIV TP+Y + S V R+RNV +SF+++ G+ +D+S + VE G Y + DGV +EA +TST + + N V QN+Y+ P VV Q+MS+++ + V F S S N AS++ +G+ VGEDP +R ET+GYIV+E G G++NG+ YEA
Sbjct: 2687 SSTWTTVDLGQSYNSAVIVATPIYPNTSTPPVVTRIRNVSGSSFDLKIDRADGLTGEVT-----------IDVSVIAVEEGVYTQATDGVTMEAVKYTSTVTA-ENNSWVAEACAYQNSYTNP-VVVGQVMSANDASWSV-FWSMGDSRQNPVDASNLNVGKHVGEDPNATRADETIGYIVIESGNGTINGVAYEA 2868
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Match: A0A7T7JBE3_9BACT (Cadherin domain-containing protein n=1 Tax=Sulfuriroseicoccus oceanibius TaxID=2707525 RepID=A0A7T7JBE3_9BACT) HSP 1 Score: 106 bits (264), Expect = 7.150e-23 Identity = 71/196 (36.22%), Postives = 108/196 (55.10%), Query Frame = 1
Query: 34 GADWETIAFTATYTEPVIVCTPLYAS-SLNYFVPRLRNVGSTSFEVRAQYTGGVPPSSEDNRNNGPSVPGVDLSCMVVEAGSYDE--DGVKLEAGTFTSTFASFKFNFGVDHVVTLQNTYSEPPAVVAQIMSSDEDLFQVAFVSDATSGSNAHTASSIAIGRQVGEDPVTSRGSETVGYIVMEQGTGSVNGIPYEA 612
+ W T+ +Y VIV TP+Y + S V R+RNV +SF+++ G+ +D+S + VE G Y + DGV +EA +TST + + N V QN+Y+ P VV Q+MS+++ + V F S +S N AS++ +G+ VGEDP +R ET+GYIV+E G G++NG+ YEA
Sbjct: 2697 SSTWTTVDLGQSYNSAVIVATPIYPNISTPPVVTRIRNVSGSSFDLKIDRADGLTGEVT-----------IDVSVIAVEEGVYTQATDGVTMEAVKYTSTVTA-ENNSWVAEARAYQNSYTNP-VVVGQVMSANDANWSV-FWSMGSSRQNPVDASNLNVGKHVGEDPNATRADETIGYIVIESGNGTINGVAYEA 2878 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10788.1049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10788.1049.1 >prot_S-firma_F_contig10788.1049.1 ID=prot_S-firma_F_contig10788.1049.1|Name=mRNA_S-firma_F_contig10788.1049.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=210bp IPLERHTFRTTGADWETIAFTATYTEPVIVCTPLYASSLNYFVPRLRNVGback to top mRNA from alignment at S-firma_F_contig10788:631..1320- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10788.1049.1 ID=mRNA_S-firma_F_contig10788.1049.1|Name=mRNA_S-firma_F_contig10788.1049.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=690bp|location=Sequence derived from alignment at S-firma_F_contig10788:631..1320- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10788:631..1320- >mRNA_S-firma_F_contig10788.1049.1 ID=mRNA_S-firma_F_contig10788.1049.1|Name=mRNA_S-firma_F_contig10788.1049.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1260bp|location=Sequence derived from alignment at S-firma_F_contig10788:631..1320- (Sphaerotrichia firma ET2_F female)back to top |