mRNA_S-firma_F_contig10764.1028.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10764.1028.1
Unique NamemRNA_S-firma_F_contig10764.1028.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Match: A0A0G4EV68_VITBC (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EV68_VITBC)

HSP 1 Score: 105 bits (263), Expect = 1.200e-26
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 PTPAPTPRDFTCAELAKFDGKQGRPMYTACHGTVFDMGSHPDGLGYYGKGMPYNCFIGIDASLLFARVILDVEKARENP--TLTAMERDTMLDWHAKFEMKYHIVG 312
            P P P P+DF+  EL+++DG+ GRP+Y A  G VFDM SHP G  +YG G  YNCF G DAS   AR+  +  +        L A E+  + DW  KFE KY +VG
Sbjct:   58 PKPDPCPKDFSLEELSQYDGRDGRPIYIAVRGKVFDMTSHPSGRDFYGPGAGYNCFAGKDASRALARMSFEASEMNRTDWDDLAASEKQVLADWETKFESKYDVVG 163          
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Match: A0A0G4FB31_9ALVE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FB31_9ALVE)

HSP 1 Score: 99.8 bits (247), Expect = 2.090e-24
Identity = 48/106 (45.28%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 PTPAPTPRDFTCAELAKFDGKQGRPMYTACHGTVFDMGSHPDGLGYYGKGMPYNCFIGIDASLLFARVILDVEKARENP--TLTAMERDTMLDWHAKFEMKYHIVG 312
            P P P P+DFT AELA+FDG  G+P+Y  C G V+DM SHPDG   YG G  YN F G DA+  FA+   D ++  +     L   E + +  W  KF+ KY +VG
Sbjct:   50 PKPNPCPKDFTPAELAEFDGSDGKPVYIGCKGVVYDMTSHPDGRTMYGPGGSYNVFAGKDATRAFAKFNFDQQEMNKGDWSDLNVFENEMLQSWVDKFDSKYDVVG 155          
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Match: A0A0G4FF53_9ALVE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FF53_9ALVE)

HSP 1 Score: 88.2 bits (217), Expect = 3.050e-20
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   22 RDFTCAELAKFDGKQGRPMYTACHGTVFDMGSHPDGLGYYGKGMPYNCFIGIDASLLFARVILDV-EKAREN-PTLTAMERDTMLDWHAKFEMKYHIVG 312
            +DFT AEL+KF G+ G P+Y A  GTV+DM SHP G  +YG G  Y+ F G DAS    ++  +  E  RE+   +++ E+ T+ +W AK++ KY +VG
Sbjct:   15 KDFTLAELSKFTGEDGGPVYIAVRGTVYDMTSHPTGRNFYGPGAGYHVFAGKDASRALGKMSFEASEMNREDWDDMSSEEKQTLDEWEAKYKQKYTVVG 113          
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Match: A0A7S4GHQ8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GHQ8_9EUGL)

HSP 1 Score: 79.7 bits (195), Expect = 1.180e-16
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    7 PAPTPRDFTCAELAKFDGKQGRPMYTACHGTVFDMGSHPDGLGYYGKGMPYNCFIGIDASLLFARVILDVEKAREN-PTLTAMERDTMLDWHAKFEMKYHIVG 312
            P P PRDFT  EL+KF G+ G P+Y +    V+++        +YG GM YN F G+D ++   R  +    A E+   LT  E +T   W AKF+ KY +VG
Sbjct:   48 PKPEPRDFTAEELSKFKGENGSPVYLSLKNIVYEVSP-----SFYGPGMGYNVFAGVDCTIPLGRSDISTNGANEDWSILTPSELETASSWEAKFQSKYDVVG 145          
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Match: A0A2R5G7H8_9STRA (NADH-cytochrome b5 reductase 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7H8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.200e-16
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   19 PRDFTCAELAKFDGKQGRPMYTACHGTVFDMGSHPDGLGYYGKGMPYNCFIGIDASLLFARVILDVEKARENPTL---TAMERDTMLDWHAKFEMKYHIVGYLTD 324
            PR+FT  ELA+F+ K GRP+Y A  G ++D+   P+   +YG+G PY    G DAS   A V LD     EN +L   T M+ +T+ +W AKFEMKY  VGYL D
Sbjct:  116 PRNFTKEELAQFNSKNGRPVYIAAKGVIYDV--DPE---FYGEGGPYEMMAGKDASRALALVSLDPADV-ENTSLEGLTWMDLNTLDEWIAKFEMKYTRVGYLID 214          
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Match: A0A7S2WTU8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WTU8_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.160e-14
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   19 PRDFTCAELAKFDGKQGRPMYTACHGTVFDMGSHPDGLGYYGKGMPYNCFIGIDASLLFARVILDVEKARENPTLTAM---ERDTMLDWHAKFEMKYHIVGYLTD 324
            PR+FT A+LA FDG+ GRP+Y    G V+D+   PD   +YG    Y    G DA+   A V LD E   EN  +  +   ++ T+ +W +KFE KY +VGYL D
Sbjct:  108 PRNFTKAQLAAFDGRDGRPVYVCAKGVVYDV--DPD---FYGPEGAYGIMAGKDATRALALVSLDPEDF-ENTRIDDLSWGDKQTLEEWVSKFEFKYPVVGYLVD 206          
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 n=96 Tax=Eutheria TaxID=9347 RepID=PGRC1_HUMAN)

HSP 1 Score: 73.6 bits (179), Expect = 6.960e-14
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 1
Query:    1 PTPAPTPRDFTCAELAKFDGKQGRPMYTACHGTVFDMGSHPDGLGYYGKGMPYNCFIGIDASLLFARVILDVEKAREN----PTLTAMERDTMLDWHAKFEMKYHIVGYL 318
            P P    RDFT AEL +FDG Q   +  A +G VFD+     G  +YG   PY  F G DAS   A   LD E  ++       LTA +++T+ DW ++F  KYH VG L
Sbjct:   64 PLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDV---TKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKL 170          
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Match: A0A0L0HVM5_SPIPD (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HVM5_SPIPD)

HSP 1 Score: 72.8 bits (177), Expect = 1.180e-13
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    1 PTPAPTPRDFTCAELAKFDGKQGR-PMYTACHGTVFDMGSHPDGLGYYGKGMPYNCFIGIDASLLFARVILDVEKA-RENPTLTAMERDTMLDWHAKFEMKYHIVGYLTD 324
            PT  P  ++FT AELA++DG     P+Y A  GTVFD+  + D    Y  G  Y+ F G DAS    +  L  E+   +  +LTA E +T+  W A ++ KY+IVG + D
Sbjct:   81 PTQPPGDKEFTAAELARYDGTNAELPVYLAVKGTVFDVTKNRD---MYSPGKGYHVFAGKDASQALGKSSLKPEECVPDYSSLTAEEMETLNKWEAHYKKKYNIVGKVVD 187          
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Match: A0A2R5GTM7_9STRA (Membrane-associated progesterone receptor component 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTM7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.950e-13
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 1
Query:   22 RDFTCAELAKFDGKQGRPMYTACHGTVFDMGSHPDGLGYYGKGMPYNCFIGIDASLLFARVILDVEKARENPT--LTAMERDTMLDWHAKFEMKYHIVGYL 318
            RDF+ AELAKF+G  G P+Y A  G VFD+ S     G+YG    Y    G DAS   A++ LD +   +  T  L++ E   + +W+ K   KY IVG L
Sbjct:    5 RDFSRAELAKFNGHDGEPVYIALKGVVFDVSSS----GFYGPDGGYALLAGRDASRALAKMKLDPDLVHDPRTDDLSSAETALLTEWYDKLSAKYPIVGSL 101          
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Match: A0A139AY04_GONPJ (Cytochrome b5 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AY04_GONPJ)

HSP 1 Score: 72.0 bits (175), Expect = 2.010e-13
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 1
Query:   22 RDFTCAELAKFDGKQGRPMYTACHGTVFDMGSHPDGLGYYGKGMPYNCFIGIDASLLFARVILDVEKAR--ENPT-----LTAMERDTMLDWHAKFEMKYHIVGYL 318
            R++T A+LA+FDG +G+ +  A +G VFD+     G  +YG G PY  F G DAS   A+   ++E  R  + P      LT  ERD ML+W + F  KY  VG+L
Sbjct:   60 REYTPADLAEFDGTEGKAIKFAVNGKVFDVSR---GRNFYGPGGPYGNFAGRDASRGMAKQSFELENIRAPDEPIDPLDDLTKEERDNMLEWESHFLHKYDHVGWL 162          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10764.1028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4EV68_VITBC1.200e-2646.23Cytochrome b5 heme-binding domain-containing prote... [more]
A0A0G4FB31_9ALVE2.090e-2445.28Cytochrome b5 heme-binding domain-containing prote... [more]
A0A0G4FF53_9ALVE3.050e-2043.43Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S4GHQ8_9EUGL1.180e-1638.83Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2R5G7H8_9STRA4.200e-1646.67NADH-cytochrome b5 reductase 2 n=1 Tax=Hondaea fer... [more]
A0A7S2WTU8_9STRA6.160e-1441.90Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
PGRC1_HUMAN6.960e-1440.91Membrane-associated progesterone receptor componen... [more]
A0A0L0HVM5_SPIPD1.180e-1339.09Cytochrome b5 heme-binding domain-containing prote... [more]
A0A2R5GTM7_9STRA1.950e-1340.59Membrane-associated progesterone receptor componen... [more]
A0A139AY04_GONPJ2.010e-1340.57Cytochrome b5 n=1 Tax=Gonapodya prolifera (strain ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10764contigS-firma_F_contig10764:4365..4812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog41875.XP_007512728.1
PFAMsCyt-b5
Max annot lvl3041|Chlorophyta
KEGG koko:K17278
Evalue7.33e-19
EggNOG OGsKOG1110@1|root,KOG1110@2759|Eukaryota,37M0Z@33090|Viridiplantae,34N6I@3041|Chlorophyta
DescriptionBelongs to the cytochrome b5 family
COG categoryS
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size327
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10764.1028.1prot_S-firma_F_contig10764.1028.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10764 4365..4812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.0416012-CDS-S-firma_F_contig10764:4364..44151622815618.0416012-CDS-S-firma_F_contig10764:4364..4415Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10764 4365..4415 -
1696949457.243787-CDS-S-firma_F_contig10764:4364..44151696949457.243787-CDS-S-firma_F_contig10764:4364..4415Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10764 4365..4415 -
1622815618.0518441-CDS-S-firma_F_contig10764:4472..45721622815618.0518441-CDS-S-firma_F_contig10764:4472..4572Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10764 4473..4572 -
1696949457.259534-CDS-S-firma_F_contig10764:4472..45721696949457.259534-CDS-S-firma_F_contig10764:4472..4572Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10764 4473..4572 -
1622815618.066361-CDS-S-firma_F_contig10764:4636..48121622815618.066361-CDS-S-firma_F_contig10764:4636..4812Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10764 4637..4812 -
1696949457.2695303-CDS-S-firma_F_contig10764:4636..48121696949457.2695303-CDS-S-firma_F_contig10764:4636..4812Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10764 4637..4812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10764.1028.1

>prot_S-firma_F_contig10764.1028.1 ID=prot_S-firma_F_contig10764.1028.1|Name=mRNA_S-firma_F_contig10764.1028.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=109bp
PTPAPTPRDFTCAELAKFDGKQGRPMYTACHGTVFDMGSHPDGLGYYGKG
MPYNCFIGIDASLLFARVILDVEKARENPTLTAMERDTMLDWHAKFEMKY
HIVGYLTDG
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mRNA from alignment at S-firma_F_contig10764:4365..4812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10764.1028.1 ID=mRNA_S-firma_F_contig10764.1028.1|Name=mRNA_S-firma_F_contig10764.1028.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=448bp|location=Sequence derived from alignment at S-firma_F_contig10764:4365..4812- (Sphaerotrichia firma ET2_F female)
CCAACGCCGGCGCCTACCCCACGGGATTTTACCTGCGCCGAGCTTGCCAA GTTCGACGGCAAGCAGGGCCGTCCGATGTACACTGCCTGCCACGGCACAG TGTTTGACATGGGGAGTCACCCCGACGGACTTGGGTACTACGGCAAAGGC ATGCCGTACAACTGCTTTATTGGAATGTCCGTGTTCCGCAGGCCCCCACC ACACAAAACCCGTTCACCCTCCCCCCCCAACAAAAACCAGCGACGCCTCC CTGTTGTTTGCTCGAGTCATCCTAGACGTGGAAAAGGCAAGAGAAAACCC AACGTTGACGGCGATGGAGCGGGACACTATGTTGGACTGGGTGCGTTGGG TGGCCCTCTGTTCTTGTGTCGCAACGCTGACTGTGCCCCACGCCCAGCAC GCAAAGTTCGAAATGAAGTACCACATTGTGGGCTACCTCACGGACGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10764:4365..4812-

>mRNA_S-firma_F_contig10764.1028.1 ID=mRNA_S-firma_F_contig10764.1028.1|Name=mRNA_S-firma_F_contig10764.1028.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=654bp|location=Sequence derived from alignment at S-firma_F_contig10764:4365..4812- (Sphaerotrichia firma ET2_F female)
CCAACGCCGGCGCCTACCCCACGGGATTTTACCTGCGCCGAGCTTGCCAA
GTTCGACGGCAAGCAGGGCCGTCCGATGTACACTGCCTGCCACGGCACAG
TGTTTGACATGGGGAGTCACCCCGACGGACTTGGGTACTACGGCAAAGGC
ATGCCGTACAACTGCTTTATTGGAATCCAACGCCGGCGCCTACCCCACGG
GATTTTACCTGCGCCGAGCTTGCCAAGTTCGACGGCAAGCAGGGCCGTCC
GATGTACACTGCCTGCCACGGCACAGTGTTTGACATGGGGAGTCACCCCG
ACGGACTTGGGTACTACGGCAAAGGCATGCCGTACAACTGCTTTATTGGA
ATCGACGCCTCCCTGTTGTTTGCTCGAGTCATCCTAGACGTGGAAAAGGC
AAGAGAAAACCCAACGTTGACGGCGATGGAGCGGGACACTATGTTGGACT
GGCGACGCCTCCCTGTTGTTTGCTCGAGTCATCCTAGACGTGGAAAAGGC
AAGAGAAAACCCAACGTTGACGGCGATGGAGCGGGACACTATGTTGGACT
GGCACGCAAAGTTCGAAATGAAGTACCACATTGTGGGCTACCTCACGGAC
GGCCACGCAAAGTTCGAAATGAAGTACCACATTGTGGGCTACCTCACGGA
CGGC
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