mRNA_S-firma_F_contig10763.1027.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10763.1027.1
Unique NamemRNA_S-firma_F_contig10763.1027.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Match: A0A8J4UT39_9MYCE (FYVE-type domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UT39_9MYCE)

HSP 1 Score: 85.9 bits (211), Expect = 1.610e-20
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 TRPIWIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVALPEFGY-LEPVRVCADCSR 201
            TRP W  DS AT   C  CR  F L NR+HHCRRCGLVFC KCSS+ V +P+  Y   PVRVC DC R
Sbjct:   18 TRPKWADDSTAT--NCKRCRVGFSLLNRRHHCRRCGLVFCQKCSSNAVKIPQLNYNFVPVRVCDDCHR 83          
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Match: A0A152A7H2_9MYCE (FYVE-type domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A7H2_9MYCE)

HSP 1 Score: 82.8 bits (203), Expect = 2.670e-19
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 TRPIWIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVALPEFGY-LEPVRVCADCSR 201
            +RP W+ D++ T   C  CR +F L  R+HHCRRCGLVFC KCSS++V +P+  Y   PVRVC DC R
Sbjct:   18 SRPKWVDDNNCT--NCHKCRTQFTLLLRRHHCRRCGLVFCQKCSSNSVKIPQLNYNFVPVRVCDDCHR 83          
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Match: A0A6I8MYZ9_ORNAN (FYVE-type domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8MYZ9_ORNAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.030e-18
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    7 PIWIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVALPEFGYLEPVRVCADC 195
            P W+ DS +    C ACR  F    R+HHCR CG +FCS+CSSH+  LP+FG+++PVRVC+ C
Sbjct:   94 PAWVPDSSSPC--CRACRAPFTFLRRRHHCRSCGQIFCSRCSSHSAPLPQFGHVKPVRVCSHC 154          
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Match: A0A6G0U9L5_APHGL (Lateral signaling target protein 2 homolog n=1 Tax=Aphis glycines TaxID=307491 RepID=A0A6G0U9L5_APHGL)

HSP 1 Score: 84.0 bits (206), Expect = 2.240e-18
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 TRPIWIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVALPEFGYLEPVRVCADC 195
            T P+W+ D++A    C +C+  F +  R+HHCR CG VFCS+CSS++V LP FG+L+PVRVC  C
Sbjct:  135 TPPLWVPDNEAPV--CMSCKAIFTVVRRRHHCRNCGKVFCSRCSSNSVPLPRFGHLKPVRVCNRC 197          
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Match: UPI001CC5784E (lateral signaling target protein 2 homolog n=2 Tax=Metatheria TaxID=9263 RepID=UPI001CC5784E)

HSP 1 Score: 80.1 bits (196), Expect = 1.720e-17
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    7 PIWIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVALPEFGYLEPVRVCADC 195
            P W+ D       C AC+  F L  R+HHCR CG +FCS+CSS++V LP FGY++PVRVC  C
Sbjct:   84 PAWVPDH--ACFHCTACQTPFSLTRRRHHCRNCGKIFCSRCSSNSVPLPWFGYMKPVRVCDHC 144          
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Match: Q54M34_DICDI (FYVE-type domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54M34_DICDI)

HSP 1 Score: 78.2 bits (191), Expect = 1.840e-17
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 TRPIWIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVALPEFGY-LEPVRVCADCSR 201
            +RP W+ DS      C  C+  F L NR+HHCRRCGLVFC++CSS+   +P+  Y   PVRVC +C R
Sbjct:   19 SRPKWVEDSHC--HNCHKCKASFTLLNRRHHCRRCGLVFCNRCSSNEAKIPQLNYNFVPVRVCDECYR 84          
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Match: A0A4X2JMC6_VOMUR (FYVE-type domain-containing protein n=1 Tax=Vombatus ursinus TaxID=29139 RepID=A0A4X2JMC6_VOMUR)

HSP 1 Score: 83.6 bits (205), Expect = 1.900e-17
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    7 PIWIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVALPEFGYLEPVRVCADC 195
            P W+ D      RC AC+  F L  R+HHCR CG +FCS+CSS +V LP FGY++PVRVCA C
Sbjct:  289 PAWVPDH--ACFRCTACQTPFSLTRRRHHCRNCGKIFCSRCSSKSVPLPWFGYMKPVRVCAHC 349          
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Match: A0A7S2SHN0_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SHN0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.420e-17
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   13 WIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVALPEFGYLEPVRVCADCSR 201
            W+ D++A+  RC  CRE+F   +R+HHCRRCG +FC KCSSH  AL + G++EPVRVC  C R
Sbjct:  530 WLKDNEAS--RCMECREQFTFVHRRHHCRRCGGIFCGKCSSHRHALLDLGHIEPVRVCDPCYR 590          
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Match: UPI0010A8325A (lateral signaling target protein 2 homolog isoform X1 n=3 Tax=Monotremata TaxID=9255 RepID=UPI0010A8325A)

HSP 1 Score: 83.6 bits (205), Expect = 3.290e-17
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    7 PIWIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVALPEFGYLEPVRVCADC 195
            P W+ DS +    C ACR  F    R+HHCR CG +FCS+CSSH+  LP+FG+++PVRVC+ C
Sbjct:  505 PAWVPDSSSPC--CRACRAPFTFLRRRHHCRSCGQIFCSRCSSHSAPLPQFGHVKPVRVCSHC 565          
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Match: G1KEJ7_ANOCA (FYVE-type domain-containing protein n=1 Tax=Anolis carolinensis TaxID=28377 RepID=G1KEJ7_ANOCA)

HSP 1 Score: 81.6 bits (200), Expect = 4.120e-17
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    7 PIWIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVALPEFGYLEPVRVCADC 195
            P W+ DS  T   C ACR+ F    R+HHCR CG +FCS+CSSH   LP F  L+PVRVC  C
Sbjct:  199 PEWVPDS--TCSHCMACRQPFTFLRRRHHCRSCGKIFCSRCSSHLAPLPHFRQLKPVRVCTHC 259          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10763.1027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4UT39_9MYCE1.610e-2060.29FYVE-type domain-containing protein n=1 Tax=Polysp... [more]
A0A152A7H2_9MYCE2.670e-1954.41FYVE-type domain-containing protein n=1 Tax=Tieghe... [more]
A0A6I8MYZ9_ORNAN1.030e-1852.38FYVE-type domain-containing protein n=1 Tax=Ornith... [more]
A0A6G0U9L5_APHGL2.240e-1852.31Lateral signaling target protein 2 homolog n=1 Tax... [more]
UPI001CC5784E1.720e-1752.38lateral signaling target protein 2 homolog n=2 Tax... [more]
Q54M34_DICDI1.840e-1750.00FYVE-type domain-containing protein n=1 Tax=Dictyo... [more]
A0A4X2JMC6_VOMUR1.900e-1755.56FYVE-type domain-containing protein n=1 Tax=Vombat... [more]
A0A7S2SHN0_9STRA2.420e-1755.56Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
UPI0010A8325A3.290e-1752.38lateral signaling target protein 2 homolog isoform... [more]
G1KEJ7_ANOCA4.120e-1753.97FYVE-type domain-containing protein n=1 Tax=Anolis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10763contigS-firma_F_contig10763:3993..4193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog78898.MVEG_00252T0
PFAMsFYVE
Max annot lvl4751|Fungi
Evalue4.03e-18
EggNOG OGsKOG1819@1|root,KOG1819@2759|Eukaryota,38NY5@33154|Opisthokonta,3P4TN@4751|Fungi,1GTYA@112252|Fungi incertae sedis
Descriptionnegative regulation of epidermal growth factor-activated receptor activity
COG categoryS
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.000278-CDS-S-firma_F_contig10763:3992..41931622815618.000278-CDS-S-firma_F_contig10763:3992..4193Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10763 3993..4193 -
1696949457.23218-CDS-S-firma_F_contig10763:3992..41931696949457.23218-CDS-S-firma_F_contig10763:3992..4193Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10763 3993..4193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10763.1027.1prot_S-firma_F_contig10763.1027.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10763 3993..4193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10763.1027.1

>prot_S-firma_F_contig10763.1027.1 ID=prot_S-firma_F_contig10763.1027.1|Name=mRNA_S-firma_F_contig10763.1027.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=67bp
TRPIWIADSDATAQRCFACREEFGLANRQHHCRRCGLVFCSKCSSHTVAL
PEFGYLEPVRVCADCSR
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mRNA from alignment at S-firma_F_contig10763:3993..4193-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10763.1027.1 ID=mRNA_S-firma_F_contig10763.1027.1|Name=mRNA_S-firma_F_contig10763.1027.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=201bp|location=Sequence derived from alignment at S-firma_F_contig10763:3993..4193- (Sphaerotrichia firma ET2_F female)
ACCCGCCCCATCTGGATTGCGGACTCGGACGCCACCGCCCAGCGGTGCTT TGCTTGCCGGGAGGAGTTTGGGTTGGCGAACCGCCAGCACCACTGCCGGC GGTGTGGGCTAGTGTTTTGCAGCAAGTGCTCCTCGCACACGGTGGCCCTC CCCGAGTTTGGGTACCTGGAACCCGTGCGGGTGTGTGCGGACTGCTCCCG G
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Coding sequence (CDS) from alignment at S-firma_F_contig10763:3993..4193-

>mRNA_S-firma_F_contig10763.1027.1 ID=mRNA_S-firma_F_contig10763.1027.1|Name=mRNA_S-firma_F_contig10763.1027.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=402bp|location=Sequence derived from alignment at S-firma_F_contig10763:3993..4193- (Sphaerotrichia firma ET2_F female)
ACCCGCCCCATCTGGATTGCGGACTCGGACGCCACCGCCCAGCGGTGCTT
TGCTTGCCGGGAGGAGTTTGGGTTGGCGAACCGCCAGCACCACTGCCGGC
GGTGTGGGCTAGTGTTTTGCAGCAAGTGCTCCTCGCACACGGTGGCCCTC
CCCGAGTTTGGGTACCTGGAACCCGTGCGGGTGTGTGCGGACTGCTCCCG
GACCCGCCCCATCTGGATTGCGGACTCGGACGCCACCGCCCAGCGGTGCT
TTGCTTGCCGGGAGGAGTTTGGGTTGGCGAACCGCCAGCACCACTGCCGG
CGGTGTGGGCTAGTGTTTTGCAGCAAGTGCTCCTCGCACACGGTGGCCCT
CCCCGAGTTTGGGTACCTGGAACCCGTGCGGGTGTGTGCGGACTGCTCCC
GG
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