mRNA_S-firma_F_contig10748.1009.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10748.1009.1
Unique NamemRNA_S-firma_F_contig10748.1009.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Match: A0A485KKH5_9STRA (Aste57867_8521 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKH5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 8.970e-31
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:   10 RGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGIEQIEDE-LNELNADAFEAFEDKLRAAGVP 231
            RGFDED GIVKLQ+AGSC GCPSS++TLKNGVENMLMHYIPEV GIE++ DE L +LN   F+  EDKLRAAG+P
Sbjct:  201 RGFDEDRGIVKLQLAGSCAGCPSSSITLKNGVENMLMHYIPEVRGIEEVVDEELKDLNEQEFKTLEDKLRAAGIP 275
[Close]
BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Match: A0A2D4C4T2_PYTIN (Iron-sulfur cluster scaffold protein Nfu-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4T2_PYTIN)

HSP 1 Score: 114 bits (286), Expect = 1.400e-29
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:   10 RGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGIEQIED-ELNELNADAFEAFEDKLRAAGV 228
            +GFDE +GIVKLQ+AGSC GCPSS++TLKNGVENML HYIPEV GIE+++D ELN +N + F++FEDKLRAAGV
Sbjct:  201 KGFDEXSGIVKLQLAGSCAGCPSSSVTLKNGVENMLKHYIPEVRGIEEVQDDELNAINENEFKSFEDKLRAAGV 274
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BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Match: A0A6A5AVA6_9STRA (NifU domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AVA6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.750e-29
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:   10 RGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGIEQIEDE--LNELNADAFEAFEDKLRAAGVP 231
            RGFDED GIVKLQ+AGSC GCPSS++TLKNGVENMLMHYIPEV GIE+I D+  +  +N   F+  E KLRAAG+P
Sbjct:   45 RGFDEDRGIVKLQLAGSCAGCPSSSVTLKNGVENMLMHYIPEVRGIEEIVDDEDVKTVNESEFQTLEAKLRAAGIP 120
[Close]
BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Match: A0A067CVC8_SAPPC (Nfu_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVC8_SAPPC)

HSP 1 Score: 113 bits (282), Expect = 5.060e-29
Identity = 52/75 (69.33%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:   10 RGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGI-EQIEDELNELNADAFEAFEDKLRAAGVP 231
            RGFDE+TGIV +Q+AGSC GCPSS++TLKNGVENMLMHYIPEV+GI E +++ELNE+N   F++ E +LRAAG+P
Sbjct:  197 RGFDEETGIVSVQLAGSCAGCPSSSVTLKNGVENMLMHYIPEVQGILEVVDEELNEINEKEFQSLEARLRAAGIP 271
[Close]
BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Match: A0A1V9Y8Q5_9STRA (Iron-sulfur cluster scaffold protein Nfu n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8Q5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 5.540e-29
Identity = 49/74 (66.22%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:   10 RGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGIEQIEDELNELNADAFEAFEDKLRAAGVP 231
            +GFDE+TGIVK+Q+AGSCVGC SS++TLKNGVENMLMHYIPEV G+E+++D L ++N + F+  E++LRAAG+P
Sbjct:  237 KGFDEETGIVKVQLAGSCVGCASSSVTLKNGVENMLMHYIPEVTGVEEVDDGLKDINENEFKTLEERLRAAGIP 310
[Close]
BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Match: A0A8K1CQF8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQF8_PYTOL)

HSP 1 Score: 112 bits (281), Expect = 7.290e-29
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:   10 RGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGIEQI-EDELNELNADAFEAFEDKLRAAGV 228
            +GFDE+ GIVKLQ+AGSC GCPSS++TLKNGVENML HYIPEV GIE++ +DEL  LN   F++FEDKLRAAGV
Sbjct:  198 KGFDEEKGIVKLQLAGSCAGCPSSSVTLKNGVENMLKHYIPEVRGIEEVTDDELKALNDQEFKSFEDKLRAAGV 271
[Close]
BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Match: A0A6G0W9T7_9STRA (Nfu_N domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9T7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.080e-28
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:   10 RGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGIEQIEDE-LNELNADAFEAFEDKLRAAGV 228
            RGFDE TGIVKLQ+AGSC GCPSS++TLKNGVENMLMHYIPEV GI+++EDE L ++N   F+  E+KLR AG+
Sbjct:  199 RGFDETTGIVKLQLAGSCAGCPSSSITLKNGVENMLMHYIPEVRGIQEVEDEELKDINNKEFQTLEEKLRKAGI 272
[Close]
BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Match: A0A1V9Y986_9STRA (Iron-sulfur cluster scaffold protein Nfu-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y986_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.930e-28
Identity = 50/75 (66.67%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:   10 RGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGIEQ-IEDELNELNADAFEAFEDKLRAAGVP 231
            +GFDE+TGIV +Q+AGSC GCPSS++TLKNGVENMLMHYIPEV GI++ +++ELNE+N   F++ E +LRAAG+P
Sbjct:  191 KGFDEETGIVTVQLAGSCAGCPSSSVTLKNGVENMLMHYIPEVRGIKEFVDEELNEVNEKEFQSLEARLRAAGIP 265
[Close]
BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Match: A0A418ANU1_9STRA (Nfu_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ANU1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 9.440e-28
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:   10 RGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGIEQIEDE--LNELNADAFEAFEDKLRAAGVP 231
            RGFDED GIVKLQ+AGSC GCPSS++TLKNGVENMLMHYIPEV GIE++ D+  +  +N   F+  E KLRAAG+P
Sbjct:  157 RGFDEDRGIVKLQLAGSCAGCPSSSVTLKNGVENMLMHYIPEVRGIEEVVDDQDVKAVNEAEFQTLEAKLRAAGIP 232
[Close]
BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Match: W4FI63_9STRA (Nfu_N domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FI63_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.060e-27
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:   10 RGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGIEQIEDE--LNELNADAFEAFEDKLRAAGVP 231
            RGFDED GIVKLQ+AGSC GCPSS++TLKNGVENMLMHYIPEV GIE+I D+  +  +N   F+  E KLRAAG+P
Sbjct:  211 RGFDEDRGIVKLQLAGSCAGCPSSSVTLKNGVENMLMHYIPEVRGIEEIVDDEDVKAVNESEFQTLEAKLRAAGIP 286
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10748.1009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A485KKH5_9STRA8.970e-3174.67Aste57867_8521 protein n=1 Tax=Aphanomyces stellat... [more]
A0A2D4C4T2_PYTIN1.400e-2972.97Iron-sulfur cluster scaffold protein Nfu-like prot... [more]
A0A6A5AVA6_9STRA1.750e-2969.74NifU domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A067CVC8_SAPPC5.060e-2969.33Nfu_N domain-containing protein n=2 Tax=Saprolegni... [more]
A0A1V9Y8Q5_9STRA5.540e-2966.22Iron-sulfur cluster scaffold protein Nfu n=1 Tax=T... [more]
A0A8K1CQF8_PYTOL7.290e-2972.97Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0W9T7_9STRA2.080e-2870.27Nfu_N domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A1V9Y986_9STRA4.930e-2866.67Iron-sulfur cluster scaffold protein Nfu-like prot... [more]
A0A418ANU1_9STRA9.440e-2868.42Nfu_N domain-containing protein n=1 Tax=Aphanomyce... [more]
W4FI63_9STRA1.060e-2769.74Nfu_N domain-containing protein n=6 Tax=Aphanomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10748contigS-firma_F_contig10748:95..328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog112098.XP_008611587.1
Preferred nameNFU4
PFAMsNfu_N,NifU
Max annot lvl2759|Eukaryota
KEGG koko:K22074
GOsGO:0000166,GO:0003674,GO:0005198,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0017076,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030554,GO:0031163,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051186,GO:0051235,GO:0051238,GO:0051604,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:0097428,GO:0097577,GO:0098771,GO:0106035,GO:1901265,GO:1901363,GO:1901564
Evalue2.14e-29
EggNOG OGsCOG0694@1|root,KOG2358@2759|Eukaryota
DescriptionNFU1 iron-sulfur cluster scaffold
COG categoryO
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.4830947-CDS-S-firma_F_contig10748:94..3281622815616.4830947-CDS-S-firma_F_contig10748:94..328Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10748 95..328 +
1696949456.3237407-CDS-S-firma_F_contig10748:94..3281696949456.3237407-CDS-S-firma_F_contig10748:94..328Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10748 95..328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10748.1009.1prot_S-firma_F_contig10748.1009.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10748 95..328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10748.1009.1

>prot_S-firma_F_contig10748.1009.1 ID=prot_S-firma_F_contig10748.1009.1|Name=mRNA_S-firma_F_contig10748.1009.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=78bp
PPPRGFDEDTGIVKLQMAGSCVGCPSSTLTLKNGVENMLMHYIPEVEGIE
QIEDELNELNADAFEAFEDKLRAAGVP*
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mRNA from alignment at S-firma_F_contig10748:95..328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10748.1009.1 ID=mRNA_S-firma_F_contig10748.1009.1|Name=mRNA_S-firma_F_contig10748.1009.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=234bp|location=Sequence derived from alignment at S-firma_F_contig10748:95..328+ (Sphaerotrichia firma ET2_F female)
CCCCCCCCCAGGGGCTTTGATGAGGACACGGGCATCGTGAAGCTCCAAAT
GGCTGGCTCCTGTGTGGGCTGCCCGTCGTCCACCCTGACCCTCAAAAACG
GCGTGGAAAACATGCTCATGCACTACATCCCAGAGGTGGAGGGCATTGAG
CAGATTGAGGACGAGTTGAACGAGCTGAACGCCGACGCCTTTGAGGCGTT
TGAGGACAAGCTGCGGGCTGCGGGTGTGCCATGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10748:95..328+

>mRNA_S-firma_F_contig10748.1009.1 ID=mRNA_S-firma_F_contig10748.1009.1|Name=mRNA_S-firma_F_contig10748.1009.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=468bp|location=Sequence derived from alignment at S-firma_F_contig10748:95..328+ (Sphaerotrichia firma ET2_F female)
CCCCCCCCCAGGGGCTTTGATGAGGACACGGGCATCGTGAAGCTCCAAAT
GGCTGGCTCCTGTGTGGGCTGCCCGTCGTCCACCCTGACCCTCAAAAACG
GCGTGGAAAACATGCTCATGCACTACATCCCAGAGGTGGAGGGCATTGAG
CAGATTGAGGACGAGTTGAACGAGCTGAACGCCGACGCCTTTGAGGCGTT
TGAGGACAAGCTGCGGGCTGCGGGTGTGCCATGACCCCCCCCCAGGGGCT
TTGATGAGGACACGGGCATCGTGAAGCTCCAAATGGCTGGCTCCTGTGTG
GGCTGCCCGTCGTCCACCCTGACCCTCAAAAACGGCGTGGAAAACATGCT
CATGCACTACATCCCAGAGGTGGAGGGCATTGAGCAGATTGAGGACGAGT
TGAACGAGCTGAACGCCGACGCCTTTGAGGCGTTTGAGGACAAGCTGCGG
GCTGCGGGTGTGCCATGA
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