mRNA_S-firma_F_contig1074.1002.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1074.1002.1
Unique NamemRNA_S-firma_F_contig1074.1002.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1074.1002.1 vs. uniprot
Match: D8LLF3_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.890e-47
Identity = 102/167 (61.08%), Postives = 117/167 (70.06%), Query Frame = 1 
Query:  205 MSFFSKGFASMLNERRLKKAAKKGSTGNAVADSGSEKAAA---KEEKKDEGRWDRLTDAYGRTYWQHSVTGEWSYGVGGSLVSPVIAVNPSLVVAYPAGALFTPSPIFAPXXXXXXKTKDXXXXXXXXXXXXXXEGKGWWEAVYDDHGNRYWEHTVTQKTTYKDPYF 696
            MSFFS GFA + N RR K+A K        A +G++K+A    K EKKDEGRWD LTDAYGRTYWQHS+TGEW+YG GG LVSPV  VNPS  + YP G +FTPSP+                XXXXXXXXXXX GKGWWE  YD+ G+RYWEHTVT+KTTYKDPY+
Sbjct:    1 MSFFSNGFAVLANNRRRKEAKK-------AAKNGADKSAQSSDKMEKKDEGRWDMLTDAYGRTYWQHSITGEWTYGCGGGLVSPVGTVNPS-PMGYPGGPVFTPSPVPGGALYPFAVAPHPKKXXXXXXXXXXXXGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 159
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BLAST of mRNA_S-firma_F_contig1074.1002.1 vs. uniprot
Match: D8LLG2_ECTSI (WW domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LLG2_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 3.900e-45
Identity = 92/172 (53.49%), Postives = 113/172 (65.70%), Query Frame = 1 
Query:  205 MSFFSKGFASMLNERRLKKAAKKGSTGNA-----VADSGSEKAAAKEEKKDEGRWDRLTDAYGRTYWQHSVTGEWSYGVGGSLVSP-VIAVNPSLVVAYPAGALFTPSPIFA--PXXXXXXKTKDXXXXXXXXXXXXXXEGKGWWEAVYDDHGNRYWEHTVTQKTTYKDPYF 696
            MSFF+ GFA+M+N RRLK AAKK  T NA      +D   +    KEE+KDEG+WD LTD YGR YWQHSVTGEW+Y  GG L +P V+AV P+ +V+ P G +FTP P++A  P      K KD              +GKGWWE  YD+ G+RYWEHTVT+KTTYKDPY+
Sbjct:    1 MSFFTSGFATMVNNRRLK-AAKKAGTKNADKNVESSDKEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVS-PHGVVFTPPPVYAAAPNPPLPTKKKDGDKQDEKKE-----KGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
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BLAST of mRNA_S-firma_F_contig1074.1002.1 vs. uniprot
Match: D8LLG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG0_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.820e-41
Identity = 101/170 (59.41%), Postives = 122/170 (71.76%), Query Frame = 1 
Query:  205 MSFFSKGFASMLNERRLKKAAKKGSTGNA-----VADSGSEKAAAKEEKKDEGRWDRLTDAYGRTYWQHSVTGEWSYGVGGSLVSP-VIAVNPSLVVAYPAGALFTPSPIFAPXXXXXXKTKDXXXXXXXXXXXXXXEGKGWWEAVYDDHGNRYWEHTVTQKTTYKDPYF 696
            MSFF+ GFA+M+N RRLK AAKK  T NA      +D+  +    KEE+KDEG+WD LTD YGR YWQH+VTGEW+Y  GG L +P V+AV+P+  +A P G +FTP      XXXX   TK XXXXXXXXXX    +GKGWWE  YD+ G+RYWEHTVT+KTTYKDPY+
Sbjct:    1 MSFFTSGFATMVNNRRLK-AAKKAGTKNADKNVESSDNEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHNVTGEWAYVYGGGLSAPPVVAVSPT-PMACPHGVVFTPPXXXXXXXXXPLPTKXXXXXXXXXXXE---KGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
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BLAST of mRNA_S-firma_F_contig1074.1002.1 vs. uniprot
Match: D8LLF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF4_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.990e-38
Identity = 82/168 (48.81%), Postives = 100/168 (59.52%), Query Frame = 1 
Query:  205 MSFFSKGFASMLNERRLKKAAKKGSTGNAVADSGSEKAAAKEEKKDEGRWDRLTDAYGRTYWQHSVTGEWSYGVGGSLVSPVIAVNPSLVVAYPAGALFTPSPI----FAPXXXXXXKTKDXXXXXXXXXXXXXXEGKGWWEAVYDDHGNRYWEHTVTQKTTYKDPYF 696
            MSFF+KG A + N  +    A+K   G      GS+K   K++KKDEG W++LTD YGRTYWQHS TGEW +G GG  V PV  VNPS  + YP G +FTPSP+      P        K               +GKGWWE  YD+ G+RYWEHTVT+KTTYKDPY+
Sbjct:    1 MSFFTKGLAGIFNNGK----ARKKDEGK-----GSDK---KKDKKDEGSWEKLTDVYGRTYWQHSKTGEWHFGYGGGFVPPVGTVNPS-PMGYPGGPVFTPSPVPGGTLFPVAVAGPPGKKKEKKE---------KGKGWWETKYDEEGDRYWEHTVTKKTTYKDPYY 146
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BLAST of mRNA_S-firma_F_contig1074.1002.1 vs. uniprot
Match: A0A6H5KRF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF5_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 8.030e-19
Identity = 51/107 (47.66%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:  391 QHSVTGEWSYGVGGSLVSP-VIAVNPSLVVAYPAGALFTPSPIFA--PXXXXXXKTKDXXXXXXXXXXXXXXE--GKGWWEAVYDDHGNRYWEHTVTQKTTYKDPYF 696
            QHSVTGEW+Y  GG L +P V+AV+P+ VV YP G +  P  ++A  P      K KD              +  GKGWWE   D  G+RYWEHTVT+K TYKDPY+
Sbjct:   17 QHSVTGEWAYVYGGGLSAPPVVAVSPTSVV-YPHGVVVMPXXVYAAAPNPPLPAKKKDVAGGQKDCDEKDEKKEKGKGWWETKSDKDGDRYWEHTVTKKITYKDPYY 122
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1074.1002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLF3_ECTSI1.890e-4761.08WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D8LLG2_ECTSI3.900e-4553.49WW domain-containing protein n=4 Tax=Ectocarpus Ta... [more]
D8LLG0_ECTSI2.820e-4159.41WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
D8LLF4_ECTSI3.990e-3848.81WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A6H5KRF5_9PHAE8.030e-1947.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1074contigS-firma_F_contig1074:18695..20463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1127
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1074.1002.1prot_S-firma_F_contig1074.1002.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1074 18899..20035 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.6878703-UTR-S-firma_F_contig1074:18694..188981622815615.6878703-UTR-S-firma_F_contig1074:18694..18898Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1074 18695..18898 +
1696949455.6991503-UTR-S-firma_F_contig1074:18694..188981696949455.6991503-UTR-S-firma_F_contig1074:18694..18898Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1074 18695..18898 +
1622815615.7337723-UTR-S-firma_F_contig1074:20035..204631622815615.7337723-UTR-S-firma_F_contig1074:20035..20463Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1074 20036..20463 +
1696949455.7499566-UTR-S-firma_F_contig1074:20035..204631696949455.7499566-UTR-S-firma_F_contig1074:20035..20463Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1074 20036..20463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.697608-CDS-S-firma_F_contig1074:18898..189681622815615.697608-CDS-S-firma_F_contig1074:18898..18968Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 18899..18968 +
1696949455.711609-CDS-S-firma_F_contig1074:18898..189681696949455.711609-CDS-S-firma_F_contig1074:18898..18968Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 18899..18968 +
1622815615.7086136-CDS-S-firma_F_contig1074:19186..193011622815615.7086136-CDS-S-firma_F_contig1074:19186..19301Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 19187..19301 +
1696949455.7276177-CDS-S-firma_F_contig1074:19186..193011696949455.7276177-CDS-S-firma_F_contig1074:19186..19301Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 19187..19301 +
1622815615.722261-CDS-S-firma_F_contig1074:19725..200351622815615.722261-CDS-S-firma_F_contig1074:19725..20035Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 19726..20035 +
1696949455.7410293-CDS-S-firma_F_contig1074:19725..200351696949455.7410293-CDS-S-firma_F_contig1074:19725..20035Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1074 19726..20035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1074.1002.1

>prot_S-firma_F_contig1074.1002.1 ID=prot_S-firma_F_contig1074.1002.1|Name=mRNA_S-firma_F_contig1074.1002.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=165bp
MSFFSKGFASMLNERRLKKAAKKGSTGNAVADSGSEKAAAKEEKKDEGRW
DRLTDAYGRTYWQHSVTGEWSYGVGGSLVSPVIAVNPSLVVAYPAGALFT
PSPIFAPPPPPPAKTKDAKKKNSKKKDEKKREGKGWWEAVYDDHGNRYWE
HTVTQKTTYKDPYF*
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mRNA from alignment at S-firma_F_contig1074:18695..20463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1074.1002.1 ID=mRNA_S-firma_F_contig1074.1002.1|Name=mRNA_S-firma_F_contig1074.1002.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1769bp|location=Sequence derived from alignment at S-firma_F_contig1074:18695..20463+ (Sphaerotrichia firma ET2_F female)
CTTCATCCCACTCTCTCTACACAGCCACCCTCTCCGACACAACTCTCTTC
CATTCAAACTGCTCATCCTAAGAGGTTCATCAAGCCTAAGCAAAGTTCTT
CGACGAAGCAGCGCAAGGGGGAGCCACCACAGACAGACACGCTGCTGCCA
GCCCCGAGTACAACAAATAGAACAACACACGATCCACAACTACCGCAGAA
GATCATGTCCTTCTTTTCCAAAGGTTTCGCGTCCATGCTCAACGAAAGGC
GTCTCAAGAAAGCTGCCAAGAAAGGTAAAGGCCCTTTCACGTCCGTCGTT
CCTATGGTTGTGCTACAGATAGTAGCTGGTTGCTGTGGTTGCTTGCTGTG
GTTGCATCATCGACGGGGTACAACACCGCACACACGTGCGAATTTGCTCC
AAGTTAAGCACCGCAACACGCCGTCCTTGCAACACGTCTGATGGACTCCA
GTTGACCCTGCCTGCTTCCTCCTTTCTCCATGCCCACTGCAGGCAGCACC
GGGAACGCTGTTGCAGACAGCGGTAGCGAAAAAGCTGCTGCCAAGGAAGA
AAAGAAAGACGAGGGGAGATGGGACAGGCTCACCGACGCCTACGGCCGGA
CATACTGGTGAGAGGGATTTAGAGAGAGAAAGAGAGAGAGAGAGATGTTC
CGATCATCATGTTTGGCTTCCACACCAAAACAACCTTTAGCGAGACCGCT
TACACCTACAGTCGCTGCCGAACAGGTGTGCATATTGTATAATGTAGATT
TTTGTACAGATATTTGTACACGCTCGCTATTCATACAGCAGGATAACAAA
GAGGTCTAAAGTCAATCATGTCCGTTTCACACCTCGTACAATACACTCCT
GGCTGGTTCTCTCCTATATCCTCCTGCAGCCAACAATATTTTGGCCATCT
CTTTGTATTCACAGATGAAAGAGCGCGAACCTAGAGTACAGAAAAATGAA
ACCAAAACCTCGTTTCTCCCCAGCCCCGGTTCAACCGCCACGCTTGCACC
ATATCTCGTCCCCAACCAACCCTCCAAACAGGCAGCACAGCGTGACCGGC
GAGTGGAGCTACGGCGTCGGTGGTAGTCTCGTCTCCCCCGTCATCGCGGT
GAACCCTTCACTCGTCGTGGCCTACCCCGCCGGCGCGCTATTCACCCCTT
CGCCAATCTTCGCACCCCCTCCCCCGCCTCCGGCCAAGACGAAAGACGCC
AAGAAGAAGAACTCCAAGAAGAAGGACGAGAAGAAAAGGGAGGGGAAGGG
TTGGTGGGAAGCAGTGTACGACGACCACGGCAATCGGTACTGGGAACACA
CGGTCACCCAGAAGACCACCTACAAGGACCCGTACTTCTGAACCGAGCTT
CGAGAGCAACGACGACGAGATGTATCAAAGAAGAATAGTAGTACATACTC
CGGAGTACATGTTTGGGAAAAACTAAGTTTTGCGGCTTCAAGCAATGAAG
CGTTTTTCGGTTTCTCGTGGTTGATGTACATTGTACATACAGTAGGTCCA
ACATTTTGCGTGCTTGTTGCAATGTGTATGGCGGTGAGAGGTTTTTGGGC
AGAGTTATGAGGGGGGCGATTCCAGGGGTGGTTTAGATGTGATCGGCAGT
TTCGTGCATGAGTGAGGGGCGATGGTTCTACATACGTAGGTAGGGGAATA
TGGTGCTACATGCAGATGGGCGTCGGATGGTGGCTGGATAGACCCTCGGG
GATTCGAGTGATATGCGAAAAATGGGACAAAAAGAATGGATACGGCTTTG
AATAACCTGGGAGTTAGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig1074:18695..20463+

>mRNA_S-firma_F_contig1074.1002.1 ID=mRNA_S-firma_F_contig1074.1002.1|Name=mRNA_S-firma_F_contig1074.1002.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=990bp|location=Sequence derived from alignment at S-firma_F_contig1074:18695..20463+ (Sphaerotrichia firma ET2_F female)
ATGTCCTTCTTTTCCAAAGGTTTCGCGTCCATGCTCAACGAAAGGCGTCT
CAAGAAAGCTGCCAAGAAAGATGTCCTTCTTTTCCAAAGGTTTCGCGTCC
ATGCTCAACGAAAGGCGTCTCAAGAAAGCTGCCAAGAAAGGCAGCACCGG
GAACGCTGTTGCAGACAGCGGTAGCGAAAAAGCTGCTGCCAAGGAAGAAA
AGAAAGACGAGGGGAGATGGGACAGGCTCACCGACGCCTACGGCCGGACA
TACTGGCAGCACCGGGAACGCTGTTGCAGACAGCGGTAGCGAAAAAGCTG
CTGCCAAGGAAGAAAAGAAAGACGAGGGGAGATGGGACAGGCTCACCGAC
GCCTACGGCCGGACATACTGGCAGCACAGCGTGACCGGCGAGTGGAGCTA
CGGCGTCGGTGGTAGTCTCGTCTCCCCCGTCATCGCGGTGAACCCTTCAC
TCGTCGTGGCCTACCCCGCCGGCGCGCTATTCACCCCTTCGCCAATCTTC
GCACCCCCTCCCCCGCCTCCGGCCAAGACGAAAGACGCCAAGAAGAAGAA
CTCCAAGAAGAAGGACGAGAAGAAAAGGGAGGGGAAGGGTTGGTGGGAAG
CAGTGTACGACGACCACGGCAATCGGTACTGGGAACACACGGTCACCCAG
AAGACCACCTACAAGGACCCGTACTTCTGAGCAGCACAGCGTGACCGGCG
AGTGGAGCTACGGCGTCGGTGGTAGTCTCGTCTCCCCCGTCATCGCGGTG
AACCCTTCACTCGTCGTGGCCTACCCCGCCGGCGCGCTATTCACCCCTTC
GCCAATCTTCGCACCCCCTCCCCCGCCTCCGGCCAAGACGAAAGACGCCA
AGAAGAAGAACTCCAAGAAGAAGGACGAGAAGAAAAGGGAGGGGAAGGGT
TGGTGGGAAGCAGTGTACGACGACCACGGCAATCGGTACTGGGAACACAC
GGTCACCCAGAAGACCACCTACAAGGACCCGTACTTCTGA
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