mRNA_S-firma_F_contig10738.996.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10738.996.1
Unique NamemRNA_S-firma_F_contig10738.996.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Match: A0A0X8HU16_9SACH (Vacuolar protein sorting-associated protein 27 n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A0X8HU16_9SACH)

HSP 1 Score: 67.4 bits (163), Expect = 1.370e-11
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 DAKQCMTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLTPQRVCNSC 189
            D+  CM C  SF    R+HHCRSCGG+FC EHS+ ++PLP +       G P+    RVC+SC
Sbjct:  179 DSDACMICSNSFSILNRKHHCRSCGGIFCQEHSSHKLPLPEL-------GIPESV--RVCDSC 232
[Close]
BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Match: A0A1G4J0R0_9SACH (Vacuolar protein sorting-associated protein 27 n=1 Tax=Lachancea mirantina TaxID=1230905 RepID=A0A1G4J0R0_9SACH)

HSP 1 Score: 67.4 bits (163), Expect = 1.370e-11
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    1 DAKQCMTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLTPQRVCNSC 189
            D+  CM C   F    R+HHCRSCGG++C EHS+ R+PLP +  +  V         RVC+SC
Sbjct:  175 DSDACMICSTKFTLLNRKHHCRSCGGIYCQEHSSRRIPLPDLGIYEPV---------RVCDSC 228
[Close]
BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Match: A0A2P6RL40_ROSCH (Putative chromatin regulator PHD family n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RL40_ROSCH)

HSP 1 Score: 66.6 bits (161), Expect = 1.580e-11
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 DAKQCMTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLTPQRVCNSC 189
            +A +C  CK SF AF+RRHHCRSCG   C EHSA++M LP    +         +P RVC+ C
Sbjct:    8 EAPRCDVCKCSFNAFRRRHHCRSCGRTLCHEHSASQMALPQFGIY---------SPVRVCSDC 61
[Close]
BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Match: G8JPM7_ERECY (Vacuolar protein sorting-associated protein 27 n=1 Tax=Eremothecium cymbalariae (strain CBS 270.75 / DBVPG 7215 / KCTC 17166 / NRRL Y-17582) TaxID=931890 RepID=G8JPM7_ERECY)

HSP 1 Score: 67.0 bits (162), Expect = 1.880e-11
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 DAKQCMTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLTPQRVCNSC 189
            D+  CM C + F   KR+HHCRSCGG+FC EHS++ +PLP +           L P RVC++C
Sbjct:  180 DSDACMICSMPFTFLKRKHHCRSCGGIFCQEHSSSTIPLPDLGI---------LHPVRVCDNC 233
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BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Match: UPI0002C2E813 (vacuolar protein sorting-associated protein 27 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C2E813)

HSP 1 Score: 65.9 bits (159), Expect = 3.040e-11
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 DAKQCMTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLTPQRVCNSC 189
            +A +C  CK SF AF+RRHHCRSCG   C EHS+++M LP    +         +P RVC+ C
Sbjct:    8 EAPRCDVCKCSFNAFRRRHHCRSCGRTLCHEHSSSQMALPQFGLY---------SPVRVCSDC 61
[Close]
BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Match: VPS27_YEAST (Vacuolar protein sorting-associated protein 27 n=11 Tax=Saccharomyces TaxID=4930 RepID=VPS27_YEAST)

HSP 1 Score: 66.2 bits (160), Expect = 3.510e-11
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    1 DAKQCMTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLTPQRVCNSC 189
            D+  CM C   F    R+HHCRSCGGVFC EHS+  +PLP +  +  V         RVC+SC
Sbjct:  172 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPV---------RVCDSC 225
[Close]
BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Match: A0A1G4INM5_9SACH (Vacuolar protein sorting-associated protein 27 n=1 Tax=Lachancea nothofagi CBS 11611 TaxID=1266666 RepID=A0A1G4INM5_9SACH)

HSP 1 Score: 66.2 bits (160), Expect = 3.510e-11
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    1 DAKQCMTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLTPQRVCNSC 189
            D+  CM C V F    R+HHCRSCGG+FC EHS+ R+PLP +  +  V         R C+ C
Sbjct:  175 DSDVCMICSVKFTLLNRKHHCRSCGGIFCQEHSSHRIPLPDLGIYEPV---------RACDDC 228
[Close]
BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Match: A0A498KLP6_MALDO (FYVE-type domain-containing protein n=7 Tax=Maleae TaxID=721813 RepID=A0A498KLP6_MALDO)

HSP 1 Score: 65.5 bits (158), Expect = 4.270e-11
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    1 DAKQCMTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLTPQRVCNSC 189
            +A +C  CK SF AF+RRHHCRSCG   C EHSA +M LP    +         +P RVC+ C
Sbjct:    8 EAPRCDVCKCSFNAFRRRHHCRSCGRTLCHEHSANQMALPQFGIY---------SPVRVCSEC 61
[Close]
BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Match: A0A2B4RGM6_STYPI (Ultraviolet-B receptor UVR8 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RGM6_STYPI)

HSP 1 Score: 65.9 bits (159), Expect = 4.790e-11
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:    7 KQCMTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLTPQRVCNSC 189
            K CM CK  F    R+HHCR CGGV+CA  ++ R P+ H+P +R         P+RVC+ C
Sbjct:  562 KNCMACKTKFSLVNRKHHCRKCGGVYCASCTSKRTPVLHLPGYR--------IPRRVCDRC 614
[Close]
BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Match: A0A1D2VBZ9_9ASCO (Vacuolar protein sorting-associated protein 27 n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VBZ9_9ASCO)

HSP 1 Score: 65.9 bits (159), Expect = 4.820e-11
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 DAKQCMTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLT-PQRVCNSC 189
            D+  CM C  +F  F R+HHCRSCGGVFC  HS+  +PLP +           +T P RVC+SC
Sbjct:  192 DSDSCMICFNNFTTFTRKHHCRSCGGVFCQSHSSKNLPLPSI----------GITEPARVCDSC 245
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10738.996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0X8HU16_9SACH1.370e-1147.62Vacuolar protein sorting-associated protein 27 n=1... [more]
A0A1G4J0R0_9SACH1.370e-1144.44Vacuolar protein sorting-associated protein 27 n=1... [more]
A0A2P6RL40_ROSCH1.580e-1147.62Putative chromatin regulator PHD family n=1 Tax=Ro... [more]
G8JPM7_ERECY1.880e-1146.03Vacuolar protein sorting-associated protein 27 n=1... [more]
UPI0002C2E8133.040e-1146.03vacuolar protein sorting-associated protein 27 n=1... [more]
VPS27_YEAST3.510e-1146.03Vacuolar protein sorting-associated protein 27 n=1... [more]
A0A1G4INM5_9SACH3.510e-1144.44Vacuolar protein sorting-associated protein 27 n=1... [more]
A0A498KLP6_MALDO4.270e-1147.62FYVE-type domain-containing protein n=7 Tax=Maleae... [more]
A0A2B4RGM6_STYPI4.790e-1144.26Ultraviolet-B receptor UVR8 n=1 Tax=Stylophora pis... [more]
A0A1D2VBZ9_9ASCO4.820e-1146.88Vacuolar protein sorting-associated protein 27 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10738contigS-firma_F_contig10738:3745..3933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog5057.CADACLAP00002278
Preferred namePIB2
PFAMsFYVE
Max annot lvl4751|Fungi
GOsGO:0000285,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0006464,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0008150,GO:0008152,GO:0008289,GO:0009987,GO:0010008,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016301,GO:0016307,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019637,GO:0030258,GO:0031090,GO:0031410,GO:0031982,GO:0035091,GO:0036211,GO:0042147,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046486,GO:0046488,GO:0046834,GO:0046854,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070647,GO:0071704,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:1901564
Evalue7.99e-11
EggNOG OGsKOG1729@1|root,KOG1729@2759|Eukaryota,39SY0@33154|Opisthokonta,3NXGB@4751|Fungi,3QSVK@4890|Ascomycota,20D4N@147545|Eurotiomycetes,3S5JZ@5042|Eurotiales
DescriptionFYVE domain protein
COG categoryS
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size189
Cds size174
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.9946952-UTR-S-firma_F_contig10738:3744..37591622815614.9946952-UTR-S-firma_F_contig10738:3744..3759Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10738 3745..3759 +
1696949455.2990887-UTR-S-firma_F_contig10738:3744..37591696949455.2990887-UTR-S-firma_F_contig10738:3744..3759Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10738 3745..3759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.0057905-CDS-S-firma_F_contig10738:3759..39331622815615.0057905-CDS-S-firma_F_contig10738:3759..3933Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10738 3760..3933 +
1696949455.3110251-CDS-S-firma_F_contig10738:3759..39331696949455.3110251-CDS-S-firma_F_contig10738:3759..3933Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10738 3760..3933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10738.996.1prot_S-firma_F_contig10738.996.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10738 3760..3933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10738.996.1

>prot_S-firma_F_contig10738.996.1 ID=prot_S-firma_F_contig10738.996.1|Name=mRNA_S-firma_F_contig10738.996.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=58bp
MTCKVSFGAFKRRHHCRSCGGVFCAEHSAARMPLPHVPKFRDVPGGPDLT
PQRVCNSC
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mRNA from alignment at S-firma_F_contig10738:3745..3933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10738.996.1 ID=mRNA_S-firma_F_contig10738.996.1|Name=mRNA_S-firma_F_contig10738.996.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=189bp|location=Sequence derived from alignment at S-firma_F_contig10738:3745..3933+ (Sphaerotrichia firma ET2_F female)
GACGCCAAGCAGTGCATGACGTGCAAGGTGTCCTTTGGTGCGTTCAAGCG
GCGCCACCACTGCCGGTCGTGTGGGGGCGTGTTCTGCGCGGAGCACTCCG
CAGCCCGGATGCCCCTCCCCCATGTCCCCAAGTTCCGGGACGTCCCTGGC
GGCCCCGACCTGACACCTCAGCGCGTGTGCAATTCCTGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10738:3745..3933+

>mRNA_S-firma_F_contig10738.996.1 ID=mRNA_S-firma_F_contig10738.996.1|Name=mRNA_S-firma_F_contig10738.996.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=348bp|location=Sequence derived from alignment at S-firma_F_contig10738:3745..3933+ (Sphaerotrichia firma ET2_F female)
ATGACGTGCAAGGTGTCCTTTGGTGCGTTCAAGCGGCGCCACCACTGCCG
GTCGTGTGGGGGCGTGTTCTGCGCGGAGCACTCCGCAGCCCGGATGCCCC
TCCCCCATGTCCCCAAGTTCCGGGACGTCCCTGGCGGCCCCGACCTGACA
CCTCAGCGCGTGTGCAATTCCTGCATGACGTGCAAGGTGTCCTTTGGTGC
GTTCAAGCGGCGCCACCACTGCCGGTCGTGTGGGGGCGTGTTCTGCGCGG
AGCACTCCGCAGCCCGGATGCCCCTCCCCCATGTCCCCAAGTTCCGGGAC
GTCCCTGGCGGCCCCGACCTGACACCTCAGCGCGTGTGCAATTCCTGC
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