mRNA_S-firma_F_contig10737.995.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI) HSP 1 Score: 229 bits (583), Expect = 1.350e-65 Identity = 100/125 (80.00%), Postives = 111/125 (88.80%), Query Frame = 3
Query: 3 MCSEYCEGDDFFGIQYGSECWCGSAS--DDEDVFRHGSATCEYPCAGDDEQTCGGYWAMSLYEYGSALPIDTPDGSRYLGCYQDHRFERALSLKLASSSDMTPEYCMDFCSEFKAKYYGLQWGRE 371
MC+ YCEGDDFFG+QYGSECWCGS DDED+FRHGS TCEYPCAGD+EQTCGGYWA+SLYEYGSAL D P+GSRYLGCY DHRFERALSLKL +S+DMT E+CMDFCSEF AKY+ +QWGRE
Sbjct: 417 MCATYCEGDDFFGMQYGSECWCGSTDEKDDEDLFRHGSTTCEYPCAGDEEQTCGGYWAISLYEYGSALATDIPEGSRYLGCYSDHRFERALSLKLTTSNDMTHEWCMDFCSEFNAKYFAVQWGRE 541
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Match: A0A6H5KQZ0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ0_9PHAE) HSP 1 Score: 196 bits (498), Expect = 5.390e-52 Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 3
Query: 54 SECWCGSAS--DDEDVFRHGSATCEYPCAGDDEQTCGGYWAMSLYEYGSALPIDTPDGSRYLGCYQDHRFERALSLKLASSSDMTPEYCMDFCSEFKAKYYGLQWGRE 371
+ECWCGS DDED+FRHGSATCEYPCAGD+EQTCGGYWA+SLYEYGSAL D P+GSRYLGCY DHRFERALSLKL +S+DMT E+CMDFCSEF AKY+ +QWGRE
Sbjct: 676 TECWCGSTDEKDDEDLFRHGSATCEYPCAGDEEQTCGGYWAISLYEYGSALATDIPEGSRYLGCYSDHRFERALSLKLTTSNDMTHEWCMDFCSEFNAKYFAVQWGRE 783
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI) HSP 1 Score: 150 bits (379), Expect = 2.950e-37 Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = 3
Query: 6 CSEYCEGDDFFGIQYGSECWCGSAS--DDEDVFRHGSATCEYPCAGDDEQTCGGYWAMSLYEYGSALPIDTPDGSRYLGCYQDHRFERALSLKLASSSDMTPE-----YCMDFCSEFKAK 344
CS+YCE + FFG+QYGSECWCG+ + D ED+FRHGSATC C+GD ++TCGG WAMSLY++GSA P D P+G+RYLGC++D+RF RALS K SS+DMT E Y M+ S F A+
Sbjct: 320 CSKYCESEPFFGMQYGSECWCGTGAGEDVEDMFRHGSATCNMACSGDKDKTCGGSWAMSLYQHGSASPGDIPEGTRYLGCFKDNRFNRALSSKQTSSNDMTLESTGVLYIMNTGSLFAAE 439
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Match: A0A6H5KAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW5_9PHAE) HSP 1 Score: 150 bits (379), Expect = 4.010e-37 Identity = 73/165 (44.24%), Postives = 102/165 (61.82%), Query Frame = 3
Query: 3 MCSEYCEGDDFFGIQYGSECWCGSASDDEDVFRHGSATCEYPCAGDDE-QTCGGYWAMSLYEYGSALPIDTPDGSRYLGCYQDHRFERALSLKLASSSDMTPEYCMDFCSEFKAKYYGLQWGRECFCGSTDEDYDQYGTATCDMQCAGDAGLICGGSLALNVFMI 494
MC++ C+G +FG Q G+ECWC SAS D S +C C G +TCGG ++S++++ P D P GS+Y+GC+ D + RAL+LK SS M + C FC A+Y+GLQ G +CFCG ++DYD++G A C +CAGD+ +CG SLA VF I
Sbjct: 292 MCADLCDGTRYFGTQDGTECWC-SASKDRPRKHGKSKSCNKACPGTSRIKTCGGRSSLSVFKF-EGEPEDVPRGSKYMGCFADDIYNRALTLKETKSSKMDYDMCESFCDAANARYFGLQSGTKCFCGKREDDYDEHGPALCSTECAGDSKSVCGDSLAQTVFRI 454
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI) HSP 1 Score: 144 bits (364), Expect = 1.180e-34 Identity = 74/164 (45.12%), Postives = 100/164 (60.98%), Query Frame = 3
Query: 3 MCSEYCEGDDFFGIQYGSECWCGSASDDEDVFRHGSAT-CEYPCAGDDEQTCGGYWAMSLYEYGSALPIDTPDGSRYLGCYQDHRFERALSLKLASSSDMTPEYCMDFCSEFKAKYYGLQWGRECFCGSTDEDYDQYGTAT-CDMQCAGDAGLICGGSLALNVF 488
+C + C G+ FF QYG ECWCGSA D HG +T C Y CAGD +QTCGG+ A ++Y Y + T S ++GCYQD R + L L SS MT E C C+ + Y+G+Q+GRECFCG + D Q+G +T CD +C GD+ +CGG A++V+
Sbjct: 355 LCEQTCLGNTFFATQYGRECWCGSAG--ADYTLHGESTDCTYACAGDADQTCGGFDAANVYLYTGDDALST---STFVGCYQDESDARIMELALTDSSSMTKEMCEAECTG--STYFGMQYGRECFCGGSSTDLLQHGESTACDYECPGDSDELCGGFYAMSVY 511
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI) HSP 1 Score: 143 bits (360), Expect = 1.290e-34 Identity = 72/162 (44.44%), Postives = 94/162 (58.02%), Query Frame = 3
Query: 3 MCSEYCEGDDFFGIQYGSECWCGSASDDEDVFRHGSATCEYPCAGDDEQTCGGYWAMSLYEYGSALPIDTPDGSRYLGCYQDHRFERALSLKLASSSDMTPEYCMDFCSEFKAKYYGLQWGRECFCGSTDEDYDQYGTATCDMQCAGDAGLICGGSLALNVF 488
+CS C F+G QY SECWCG D+ D +G C+ C+GD QTCGG++AMS+YE PD S YLGCY D R L +A+S DMT E C+ C ++ YYG Q+ +C+CG + DYD G CDM C+GDA ICGG ++V+
Sbjct: 42 VCSVLCASSAFYGTQYSSECWCG---DNVDYDANGEGVCDMACSGDSSQTCGGFYAMSVYE--------NPDDSGYLGCYSDPADSRIFEL-VATSDDMTSEICLGNCGAYQ--YYGTQYSTQCWCGD-NADYDANGAGECDMACSGDASEICGGFYTMSVY 188
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI) HSP 1 Score: 146 bits (369), Expect = 2.090e-34 Identity = 75/164 (45.73%), Postives = 99/164 (60.37%), Query Frame = 3
Query: 3 MCSEYCEGDDFFGIQYGSECWCGSASDDEDVFRHG-SATCEYPCAGDDEQTCGGYWAMSLYEYGSALPIDTPDGSRYLGCYQDHRFERALSLKLASSSDMTPEYCMDFCSEFKAKYYGLQWGRECFCGSTDEDYDQYGTAT-CDMQCAGDAGLICGGSLALNVF 488
+C + C G+ +F QYG ECWCGSA D HG SA C Y CAGD +QTCGG+ A ++Y Y D P S ++GCYQD R + L L SS MT E C C+ Y+G+Q+GRECFCG + D Q+G +T CD +C GD+ +CGG A++V+
Sbjct: 770 LCEQTCLGNTYFATQYGRECWCGSAG--ADYILHGESADCTYACAGDADQTCGGFDAANVYLY---TGDDVPTTSSFVGCYQDESDARIMELALTDSSSMTKERCEAECTG--NTYFGMQYGRECFCGGSSTDLLQHGESTSCDYECPGDSDQVCGGFYAMSVY 926
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Match: D7FUE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI) HSP 1 Score: 130 bits (328), Expect = 9.480e-33 Identity = 70/167 (41.92%), Postives = 97/167 (58.08%), Query Frame = 3
Query: 3 MCSEYCEGDDFFGIQYGSECWCGSASDDEDVFRHGSAT-CEYPCAGDDEQTCGGYWAMSLYEYGSALPIDTPDGSRYLGCYQDHRFERALSLKLASSSDMTPEYCMDFCSEFKAKYYGLQWGRECFCGSTDEDYDQYG-TATCDMQCAGDAGLICGGSLALNVFMIY 497
+C C G +F QYG ECWCGSA D HG +T C Y CAG+ +QTCGG+ A ++Y Y + TP S ++GCYQD R + L L SS MT E C C+ +Y+G+Q+G ECFCG + + + G ++ CD +C GD+ CGG A++V+ Y
Sbjct: 5 LCELTCLGSTYFATQYGRECWCGSAG--MDYALHGESTDCTYGCAGNADQTCGGFDAANVYRYTNE---STPTSS-FVGCYQDESDARMMELALTDSSSMTKEMCEAECTG--NRYFGMQYGSECFCGGSSTNLLENGESSACDYECPGDSEQECGGFYAMSVYSYY 163
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI) HSP 1 Score: 135 bits (339), Expect = 5.640e-32 Identity = 70/164 (42.68%), Postives = 97/164 (59.15%), Query Frame = 3
Query: 3 MCSEYCEGDDFFGIQYGSECWCGSASDDEDVFRHGSAT-CEYPCAGDDEQTCGGYWAMSLYEYGSALPIDTPDGSRYLGCYQDHRFERALSLKLASSSDMTPEYCMDFCSEFKAKYYGLQWGRECFCGSTDEDYDQYG-TATCDMQCAGDAGLICGGSLALNVF 488
+C C G +F QYG ECWCGSA D D HG +T C Y CAGD +QTCGG+ A ++Y Y ++ S ++GCYQD R + L L SS M+ E C C Y+GLQ+GRECFCG + D ++G ++ C+ +C GD+ +CGG A++V+
Sbjct: 233 LCELTCLGSTYFATQYGRECWCGSA--DMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYTD----ESTAISAFVGCYQDESGSRIMELALTDSSSMSMEMCEAKCRG--NTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVY 388
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Match: D7FLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI8_ECTSI) HSP 1 Score: 139 bits (350), Expect = 6.880e-32 Identity = 75/162 (46.30%), Postives = 91/162 (56.17%), Query Frame = 3
Query: 15 YCEGDDFFGIQYGSECWCGSASDDEDVFRHGS---ATCEYPCAGDDEQTCGGYWAMSLYEYGSALPIDTPDGSRYLGCYQDHRFERALSLKLASSSDMTPEYCMDFCSEFKAKYYGLQWGRECFCGSTDEDYDQYGTA-TCDMQCAGDAGLICGGSLALNVF 488
Y EG F+G+QYG ECWCG A D D R GS + C YPC GD TCGGY A +E GS T + YLGCY D R R S + +D E C C + YYGLQ+G +CFCG+ DEDY YG + C + C GDA CGGS A++V+
Sbjct: 84 YSEGYQFYGLQYGQECWCGVAGTDYD--RLGSLDMSECAYPCTGDASSTCGGYLAFQAFELGSQNQPTTAPPTGYLGCYADDR-SRIFSALHVTLTDNNAESCKASCVGYA--YYGLQYGEQCFCGTADEDYTVYGESDNCVLSCTGDASSTCGGSWAMDVY 240 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10737.995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10737.995.1 >prot_S-firma_F_contig10737.995.1 ID=prot_S-firma_F_contig10737.995.1|Name=mRNA_S-firma_F_contig10737.995.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=166bp MCSEYCEGDDFFGIQYGSECWCGSASDDEDVFRHGSATCEYPCAGDDEQTback to top mRNA from alignment at S-firma_F_contig10737:200..2590+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10737.995.1 ID=mRNA_S-firma_F_contig10737.995.1|Name=mRNA_S-firma_F_contig10737.995.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2391bp|location=Sequence derived from alignment at S-firma_F_contig10737:200..2590+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10737:200..2590+ >mRNA_S-firma_F_contig10737.995.1 ID=mRNA_S-firma_F_contig10737.995.1|Name=mRNA_S-firma_F_contig10737.995.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=996bp|location=Sequence derived from alignment at S-firma_F_contig10737:200..2590+ (Sphaerotrichia firma ET2_F female)back to top |