mRNA_S-firma_F_contig10736.994.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10736.994.1
Unique NamemRNA_S-firma_F_contig10736.994.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Match: UPI00055A6AB6 (DUF2510 domain-containing protein n=1 Tax=Rhodococcus wratislaviensis TaxID=44752 RepID=UPI00055A6AB6)

HSP 1 Score: 54.3 bits (129), Expect = 2.220e-7
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:   13 PHQGWYDDPEGSGALRWWDGVQWTSATKPK 102
            P  GW+ DPEG+  LRWWDG QWTSATKP+
Sbjct:    6 PSPGWHPDPEGTPQLRWWDGTQWTSATKPR 35
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BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Match: A0A2D4TD41_9GAMM (DUF2510 domain-containing protein n=2 Tax=Haliea TaxID=475794 RepID=A0A2D4TD41_9GAMM)

HSP 1 Score: 50.1 bits (118), Expect = 1.360e-6
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 1 
Query:   13 PHQGWYDDPEGSGALRWWDGVQWTS 87
            P +GWY DPE SG LRWWDGVQWT+
Sbjct:   11 PPEGWYPDPEQSGRLRWWDGVQWTA 35
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BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Match: A0A076EX46_RHOOP (DUF2510 domain-containing protein n=2 Tax=Rhodococcus TaxID=1827 RepID=A0A076EX46_RHOOP)

HSP 1 Score: 53.9 bits (128), Expect = 1.610e-6
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:   13 PHQGWYDDPEGSGALRWWDGVQWTSATKPK 102
            P  GW+ DPEG+  LRWWDG QWTSATKP+
Sbjct:    6 PPPGWHPDPEGTPQLRWWDGTQWTSATKPR 35
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BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Match: A0A7V9LTM0_9ACTN (DUF2510 domain-containing protein (Fragment) n=1 Tax=Geodermatophilaceae bacterium TaxID=1882271 RepID=A0A7V9LTM0_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 1.640e-6
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 1 
Query:    7 SQPHQGWYDDPEGSGALRWWDGVQWTSATKPKP 105
            SQP  GWY DP G+ A RWWDG QWT  T+  P
Sbjct:    2 SQPQPGWYADPSGAAAQRWWDGNQWTDHTQQPP 34
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BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Match: A0A840XQY6_9MICO (DUF2510 domain-containing protein n=1 Tax=Chryseoglobus frigidaquae TaxID=424758 RepID=A0A840XQY6_9MICO)

HSP 1 Score: 53.5 bits (127), Expect = 1.710e-6
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:   13 PHQGWYDDPEGSGALRWWDGVQWTSATKPKP 105
            P  GWYDDPE +  LRWWDGV+WT+ T+PKP
Sbjct:    7 PAAGWYDDPEMALRLRWWDGVRWTTHTRPKP 37
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BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Match: UPI00117B9C80 (DUF2510 domain-containing protein n=2 Tax=Rhodococcus TaxID=1827 RepID=UPI00117B9C80)

HSP 1 Score: 53.1 bits (126), Expect = 2.390e-6
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   13 PHQGWYDDPEGSGALRWWDGVQWTSATKPK 102
            P  GW+ DPEG   LRWWDG QWTSATKP+
Sbjct:   30 PPAGWHPDPEGRSQLRWWDGSQWTSATKPR 59
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BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Match: UPI000562FED4 (DUF2510 domain-containing protein n=1 Tax=Rhodococcus fascians TaxID=1828 RepID=UPI000562FED4)

HSP 1 Score: 53.1 bits (126), Expect = 2.390e-6
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:   22 GWYDDPEGSGALRWWDGVQWTSATKP 99
            GW+ DPEG+G LRWWDG QWTSAT+P
Sbjct:    6 GWHPDPEGTGQLRWWDGQQWTSATRP 31
[Close]
BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Match: UPI000645B005 (DUF2510 domain-containing protein n=1 Tax=Mesorhizobium sp. F7 TaxID=1574409 RepID=UPI000645B005)

HSP 1 Score: 52.8 bits (125), Expect = 3.560e-6
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   13 PHQGWYDDPEGSGALRWWDGVQWTSATKPKPGAAVIGAHPVHAA 144
            P  GWYDDPE +  LRWWDG++WT+ T+PKP    +  HP   A
Sbjct:    7 PAAGWYDDPEMALRLRWWDGLRWTTHTRPKP----VVEHPAEQA 46
[Close]
BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Match: I0WG12_RHOOP (DUF2510 domain-containing protein n=1 Tax=Rhodococcus imtechensis RKJ300 = JCM 13270 TaxID=1165867 RepID=I0WG12_RHOOP)

HSP 1 Score: 52.8 bits (125), Expect = 4.150e-6
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   13 PHQGWYDDPEGSGALRWWDGVQWTSATKPK 102
            P  GW+ DPEG   LRWWDG QWTSATKP+
Sbjct:    6 PPPGWHPDPEGIPRLRWWDGTQWTSATKPR 35
[Close]
BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Match: UPI001FD5170C (DUF4041 domain-containing protein n=1 Tax=Nocardioides sp. W7 TaxID=2931390 RepID=UPI001FD5170C)

HSP 1 Score: 52.8 bits (125), Expect = 4.350e-6
Identity = 20/28 (71.43%), Postives = 22/28 (78.57%), Query Frame = 1 
Query:   19 QGWYDDPEGSGALRWWDGVQWTSATKPK 102
            QGWYDDP+    +RWWDG QWTS TKPK
Sbjct:    5 QGWYDDPQDQSIIRWWDGQQWTSHTKPK 32
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10736.994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00055A6AB62.220e-770.00DUF2510 domain-containing protein n=1 Tax=Rhodococ... [more]
A0A2D4TD41_9GAMM1.360e-676.00DUF2510 domain-containing protein n=2 Tax=Haliea T... [more]
A0A076EX46_RHOOP1.610e-670.00DUF2510 domain-containing protein n=2 Tax=Rhodococ... [more]
A0A7V9LTM0_9ACTN1.640e-660.61DUF2510 domain-containing protein (Fragment) n=1 T... [more]
A0A840XQY6_9MICO1.710e-667.74DUF2510 domain-containing protein n=1 Tax=Chryseog... [more]
UPI00117B9C802.390e-670.00DUF2510 domain-containing protein n=2 Tax=Rhodococ... [more]
UPI000562FED42.390e-676.92DUF2510 domain-containing protein n=1 Tax=Rhodococ... [more]
UPI000645B0053.560e-652.27DUF2510 domain-containing protein n=1 Tax=Mesorhiz... [more]
I0WG12_RHOOP4.150e-670.00DUF2510 domain-containing protein n=1 Tax=Rhodococ... [more]
UPI001FD5170C4.350e-671.43DUF4041 domain-containing protein n=1 Tax=Nocardio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10736contigS-firma_F_contig10736:3533..3838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1105029.HMPREF1137_1515
PFAMsDUF2510
Max annot lvl201174|Actinobacteria
Evalue5.32e-09
EggNOG OGs29YCP@1|root,30K72@2|Bacteria,2HME6@201174|Actinobacteria,4D6V8@85005|Actinomycetales
DescriptionProtein of unknown function (DUF2510)
COG categoryS
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.8554487-CDS-S-firma_F_contig10736:3532..35971622815614.8554487-CDS-S-firma_F_contig10736:3532..3597Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10736 3533..3597 +
1696949455.2145681-CDS-S-firma_F_contig10736:3532..35971696949455.2145681-CDS-S-firma_F_contig10736:3532..3597Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10736 3533..3597 +
1622815614.8684416-CDS-S-firma_F_contig10736:3654..38381622815614.8684416-CDS-S-firma_F_contig10736:3654..3838Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10736 3655..3838 +
1696949455.2260268-CDS-S-firma_F_contig10736:3654..38381696949455.2260268-CDS-S-firma_F_contig10736:3654..3838Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10736 3655..3838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10736.994.1prot_S-firma_F_contig10736.994.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10736 3533..3838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10736.994.1

>prot_S-firma_F_contig10736.994.1 ID=prot_S-firma_F_contig10736.994.1|Name=mRNA_S-firma_F_contig10736.994.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=83bp
MQSQPHQGWYDDPEGSGALRWWDGVQWTSATKPKPGAAVIGAHPVHAAQP
VAHGYPPQQPAQAYAPHQPAQAYAPQQPAHGYP
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mRNA from alignment at S-firma_F_contig10736:3533..3838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10736.994.1 ID=mRNA_S-firma_F_contig10736.994.1|Name=mRNA_S-firma_F_contig10736.994.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=306bp|location=Sequence derived from alignment at S-firma_F_contig10736:3533..3838+ (Sphaerotrichia firma ET2_F female)
ATGCAATCCCAGCCACACCAAGGCTGGTACGACGACCCTGAAGGCTCCGG
TGCGCTGAGGTGGTGGTGCGTACGCGTTGCGGCGAGGGTTGCGTAATTCT
GTTTGAAACCAGTGCTGTGCAGGGACGGTGTGCAGTGGACAAGTGCCACA
AAACCAAAGCCTGGCGCCGCTGTCATTGGCGCCCACCCGGTGCATGCTGC
CCAACCTGTTGCTCACGGCTATCCGCCCCAACAACCAGCCCAAGCGTACG
CACCCCATCAACCAGCCCAAGCGTACGCACCCCAACAACCAGCCCACGGA
TACCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10736:3533..3838+

>mRNA_S-firma_F_contig10736.994.1 ID=mRNA_S-firma_F_contig10736.994.1|Name=mRNA_S-firma_F_contig10736.994.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=498bp|location=Sequence derived from alignment at S-firma_F_contig10736:3533..3838+ (Sphaerotrichia firma ET2_F female)
ATGCAATCCCAGCCACACCAAGGCTGGTACGACGACCCTGAAGGCTCCGG
TGCGCTGAGGTGGTGATGCAATCCCAGCCACACCAAGGCTGGTACGACGA
CCCTGAAGGCTCCGGTGCGCTGAGGTGGTGGGACGGTGTGCAGTGGACAA
GTGCCACAAAACCAAAGCCTGGCGCCGCTGTCATTGGCGCCCACCCGGTG
CATGCTGCCCAACCTGTTGCTCACGGCTATCCGCCCCAACAACCAGCCCA
AGCGTACGCACCCCATCAACCAGCCCAAGCGTACGCACCCCAACAACCAG
CCCACGGATACCCCGGACGGTGTGCAGTGGACAAGTGCCACAAAACCAAA
GCCTGGCGCCGCTGTCATTGGCGCCCACCCGGTGCATGCTGCCCAACCTG
TTGCTCACGGCTATCCGCCCCAACAACCAGCCCAAGCGTACGCACCCCAT
CAACCAGCCCAAGCGTACGCACCCCAACAACCAGCCCACGGATACCCC
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