mRNA_S-firma_F_contig10734.993.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10734.993.1
Unique NamemRNA_S-firma_F_contig10734.993.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Match: A0A352VGI6_9BACT (Uncharacterized protein (Fragment) n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A352VGI6_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.150e-8
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    7 GRPSIPLIDYSKTADVDGVKAEIARGADVNAQDHLGKTAVYWSAFYGQVEMLEALLRAGALMDVGDTSDNMTPL 228
            G P  P+ D +   DVD V+  +  GADVNA    G +A++W+A +G  E+ E LL AGA +DV       TPL
Sbjct:   22 GAPDAPVADAAMRGDVDAVRQLLREGADVNAAQGDGMSALHWAAEHGDPELTEMLLYAGATIDVVTRIGEYTPL 95          
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Match: A0A7Y3EDA9_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y3EDA9_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.030e-7
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    7 GRPSIPLIDYSKTADVDGVKAEIARGADVNAQDHLGKTAVYWSAFYGQVEMLEALLRAGALMDVGDTSDNMTPLMGAA 240
            G P  P+ D +   DV  V+  +  GADVNA    G TA++W+A +G VE+ E L+ AG  +D        TP+M AA
Sbjct:   31 GNPEAPVADAAMREDVSEVRQLLQGGADVNAAQGDGMTALHWAARHGHVELAEMLVYAGGHLDAATRLGPYTPVMIAA 108          
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Match: A0A2E7ATP9_9BACT (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A2E7ATP9_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.030e-7
Identity = 34/84 (40.48%), Postives = 46/84 (54.76%), Query Frame = 1
Query:   22 PLIDYSKTADVDGVKAEIARGADVNAQDHLGKTAVYWSAFYGQVEMLEALLRAGALMDVGDTSDNMTPLMGAAYNWRKDAVAFL 273
            P+ D +   D++ V+A +  GADVNA    G TA++WSA    V  +E LL AGA+++        TPL  AA     DAVA L
Sbjct:   35 PVADAAMREDINTVRALLREGADVNASQGDGMTALHWSALTDDVTTMEVLLYAGAVVEPMTRLGGYTPLHLAAMQGNGDAVARL 118          
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Match: A0A432S653_9AQUI (Uncharacterized protein n=2 Tax=Persephonella sp. TaxID=2060922 RepID=A0A432S653_9AQUI)

HSP 1 Score: 55.1 bits (131), Expect = 1.190e-7
Identity = 27/82 (32.93%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   13 PSIPLIDYSKTADVDGVKAEIARGADVNAQDHLGKTAVYWSAFYGQVEMLEALLRAGALMDVGDTSDNMTPLMGAAYNWRKD 258
            P   L+  SK+ +++ VK  IA+GA++NA+D  G TA++W+ +YG  +++  L+  GA   + D    +TP+  A +N + +
Sbjct:   27 PDRMLLTASKSGNIEYVKLAIAKGANLNAKDDKGSTALHWAVYYGYKDIVRLLIMQGANPYITDNY-GLTPIDVARFNQKTE 107          
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Match: A0A6N8VVY3_9GAMM (Uncharacterized protein (Fragment) n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N8VVY3_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 2.600e-7
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    4 GGRPSIPLIDYSKTADVDGVKAEIARGADVNAQDHLGKTAVYWSAFYGQVEMLEALLRAGALMDVGDTSDNMTP 225
            GG    P+ D +   D++ V++ +  GADVNA    G TA++W+A  G  E+ + LL AGA +D G    + TP
Sbjct:   29 GGWSDAPVADAAARGDLEAVRSLLREGADVNAPQGDGMTALHWAAERGDAELADVLLYAGARVDAGTRIGHYTP 102          
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Match: A0A6N8ZF40_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N8ZF40_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 2.650e-7
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    4 GGRPSIPLIDYSKTADVDGVKAEIARGADVNAQDHLGKTAVYWSAFYGQVEMLEALLRAGALMDVGDTSDNMTP 225
            GG    P+ D +   D++ V++ +  GADVNA    G TA++W+A  G  E+ + LL AGA +D G    + TP
Sbjct:   29 GGWSDAPVADAAARGDLEAVRSLLREGADVNAPQGDGMTALHWAAERGDAELADVLLYAGARVDAGTRIGHYTP 102          
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Match: A0A3L6QFS4_PANMI (Protein S-acyltransferase 24-like n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6QFS4_PANMI)

HSP 1 Score: 55.1 bits (131), Expect = 9.030e-7
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   19 IPLIDYSKTADV--DGVKAEIA-RGADVNAQDHLGKTAVYWSAFYGQVEMLEALLRAGALMDVGDTSDNMTPLMGAAY 243
            IP I  S+ A    +   AE+   GADVNA DH G+TA++WSA  G +++ E LL+ GA +D  D     T  + A Y
Sbjct:   43 IPNIKISRPASCSNENCAAELKLHGADVNAIDHTGQTALHWSAVRGHIQVAELLLKEGAKVDAADLYGYQTTHVAAQY 120          
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Match: A0A523E9F1_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523E9F1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 9.130e-7
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   13 PSIPLIDYSKTADVDGVKAEIARGADVNAQDHLGKTAVYWSAFYGQVEMLEALLRAGALMDVGDTSDNMTP 225
            PS P+ D++   D D V+  + +GADVNA    G TA++W+A  G  EM E L+ AGA ++      + TP
Sbjct:   25 PSSPVADFATHGDRDAVRTLLQQGADVNAAQGDGMTALHWAAELGDAEMAEMLVYAGANVEAETRVGHYTP 95          
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Match: A0A7Y3I6N1_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y3I6N1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 9.140e-7
Identity = 30/89 (33.71%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    7 GRPSIPLIDYSKTADVDGVKAEIARGADVNAQDHLGKTAVYWSAFYGQVEMLEALLRAGALMDVGDTSDNMTPLMGAAYNWRKDAVAFL 273
            G    P+ D ++  D++ V+A +  GADVNA    G +A++W+A  G  +M+E L+ AGA ++        TPL  A++     AV  L
Sbjct:   40 GSVDAPVADAAERGDLEAVRALLRDGADVNASQGDGMSALHWAAMNGDADMIEVLVYAGATLEGTTRLGGYTPLHLASHRGLSAAVQAL 128          
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Match: A0A381X0J2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381X0J2_9ZZZZ)

HSP 1 Score: 54.7 bits (130), Expect = 1.240e-6
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   13 PSIPLIDYSKTADVDGVKAEIARGADVNAQDHLGKTAVYWSAFYGQVEMLEALLRAGALMDVGDTSDNMTP 225
            P  P+ D +   D++GV+A +  GADVNA    G TA++W+A  G +E+L+ LL AGA ++      + TP
Sbjct:   16 PDSPVADAAMRGDINGVQALLKNGADVNAAQGDGMTALHWAAESGDMEILKMLLYAGANLESVTRLGDYTP 86          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10734.993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352VGI6_9BACT2.150e-841.89Uncharacterized protein (Fragment) n=3 Tax=Gemmati... [more]
A0A7Y3EDA9_9BACT1.030e-739.74Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A2E7ATP9_9BACT1.030e-740.48Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A432S653_9AQUI1.190e-732.93Uncharacterized protein n=2 Tax=Persephonella sp. ... [more]
A0A6N8VVY3_9GAMM2.600e-737.84Uncharacterized protein (Fragment) n=2 Tax=Gammapr... [more]
A0A6N8ZF40_9GAMM2.650e-737.84Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A3L6QFS4_PANMI9.030e-741.03Protein S-acyltransferase 24-like n=1 Tax=Panicum ... [more]
A0A523E9F1_9BACT9.130e-739.44Ankyrin repeat domain-containing protein n=1 Tax=A... [more]
A0A7Y3I6N1_9BACT9.140e-733.71Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]
A0A381X0J2_9ZZZZ1.240e-639.44Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10734contigS-firma_F_contig10734:4641..4913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog1158338.JNLJ01000001_gene1207
PFAMsAnk_4
Max annot lvl2|Bacteria
Evalue9.17e-10
EggNOG OGsCOG0666@1|root,COG0666@2|Bacteria
Descriptionresponse to abiotic stimulus
COG categoryG
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.7807612-CDS-S-firma_F_contig10734:4640..49131622815614.7807612-CDS-S-firma_F_contig10734:4640..4913Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10734 4641..4913 -
1696949455.1980822-CDS-S-firma_F_contig10734:4640..49131696949455.1980822-CDS-S-firma_F_contig10734:4640..4913Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10734 4641..4913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10734.993.1prot_S-firma_F_contig10734.993.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10734 4641..4913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10734.993.1

>prot_S-firma_F_contig10734.993.1 ID=prot_S-firma_F_contig10734.993.1|Name=mRNA_S-firma_F_contig10734.993.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=91bp
MGGRPSIPLIDYSKTADVDGVKAEIARGADVNAQDHLGKTAVYWSAFYGQ
VEMLEALLRAGALMDVGDTSDNMTPLMGAAYNWRKDAVAFL
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mRNA from alignment at S-firma_F_contig10734:4641..4913-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10734.993.1 ID=mRNA_S-firma_F_contig10734.993.1|Name=mRNA_S-firma_F_contig10734.993.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=273bp|location=Sequence derived from alignment at S-firma_F_contig10734:4641..4913- (Sphaerotrichia firma ET2_F female)
ATGGGCGGGCGGCCGTCGATTCCCCTCATTGACTACAGCAAAACCGCTGA CGTGGACGGCGTCAAGGCAGAGATTGCCCGGGGCGCCGACGTGAACGCAC AGGACCACCTGGGCAAGACAGCCGTTTACTGGTCAGCGTTTTACGGCCAG GTTGAGATGCTTGAAGCACTCCTCCGGGCTGGGGCCTTGATGGACGTCGG GGACACATCAGACAACATGACCCCTCTCATGGGGGCTGCGTATAACTGGA GAAAGGACGCTGTCGCGTTTCTC
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Coding sequence (CDS) from alignment at S-firma_F_contig10734:4641..4913-

>mRNA_S-firma_F_contig10734.993.1 ID=mRNA_S-firma_F_contig10734.993.1|Name=mRNA_S-firma_F_contig10734.993.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=546bp|location=Sequence derived from alignment at S-firma_F_contig10734:4641..4913- (Sphaerotrichia firma ET2_F female)
ATGGGCGGGCGGCCGTCGATTCCCCTCATTGACTACAGCAAAACCGCTGA
CGTGGACGGCGTCAAGGCAGAGATTGCCCGGGGCGCCGACGTGAACGCAC
AGGACCACCTGGGCAAGACAGCCGTTTACTGGTCAGCGTTTTACGGCCAG
GTTGAGATGCTTGAAGCACTCCTCCGGGCTGGGGCCTTGATGGACGTCGG
GGACACATCAGACAACATGACCCCTCTCATGGGGGCTGCGTATAACTGGA
GAAAGGACGCTGTCGCGTTTCTCATGGGCGGGCGGCCGTCGATTCCCCTC
ATTGACTACAGCAAAACCGCTGACGTGGACGGCGTCAAGGCAGAGATTGC
CCGGGGCGCCGACGTGAACGCACAGGACCACCTGGGCAAGACAGCCGTTT
ACTGGTCAGCGTTTTACGGCCAGGTTGAGATGCTTGAAGCACTCCTCCGG
GCTGGGGCCTTGATGGACGTCGGGGACACATCAGACAACATGACCCCTCT
CATGGGGGCTGCGTATAACTGGAGAAAGGACGCTGTCGCGTTTCTC
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