mRNA_S-firma_F_contig10734.992.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10734.992.1
Unique NamemRNA_S-firma_F_contig10734.992.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Match: K3WDN7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDN7_GLOUD)

HSP 1 Score: 176 bits (447), Expect = 2.890e-47
Identity = 103/217 (47.47%), Postives = 143/217 (65.90%), Query Frame = 1
Query:  154 GKSLMHPKIIKLMQVLGDHFSRYQV---STRAIVFTNNRSSVDELLVHLKKLD-LVQALPFVGQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLDIGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHAMIQHRRISSGLKSGLRSFAMYRDNPVMVWAPNTPPPALSEVSLELDEFRSSQVGG 792
            GKS  HPK++KL +VL +HFSR+     STRAIVFT  R+SV+E++  L ++  L++   FVGQ  S  A +       GQ+Q++QQE + KFR GE NVLVATCI EEGLDIG VDL+V +D++ SPVRM+QR+GRTGRKR G  + L TEG E KK   ++   + +S  + +  +S  +Y   P M+  P+   P LS++ + + EF SSQ+GG
Sbjct:  429 GKSSSHPKLLKLREVLHEHFSRHVTGNSSTRAIVFTQYRTSVNEIVSLLNQMSPLLKVQAFVGQGASGKAKESK-----GQSQKQQQEIVKKFRNGEFNVLVATCIAEEGLDIGEVDLIVSFDALTSPVRMIQRMGRTGRKRVGKVIILVTEGDEEKKLARSVASAKTVSRAMTT-FKSKFVYAKCPRMI--PSGIQPELSKLEMLIPEFHSSQIGG 637          
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Match: A0A8K1CNQ3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNQ3_PYTOL)

HSP 1 Score: 172 bits (435), Expect = 5.540e-45
Identity = 103/217 (47.47%), Postives = 137/217 (63.13%), Query Frame = 1
Query:  154 GKSLMHPKIIKLMQVLGDHFSRY---QVSTRAIVFTNNRSSVDELLVHLKKL-DLVQALPFVGQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLDIGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHAMIQHRRISSGLKSGLRSFAMYRDNPVMVWAPNTPPPALSEVSLELDEFRSSQVGG 792
            G +  HPK++KL +VL +HF R+   Q STRAIVFT  R+SV E++  L  L  L++  PFVGQ  SK +         GQ Q++QQE + KFR+G  NVLVATCI EEGLDIG VDL+V +D++ SPVRM+QR+GRTGRKR G  + L TEG E KK   ++   + +S  L +    F  Y   P MV  P    P LS +++E+ EF +SQ+ G
Sbjct:  514 GDTGSHPKLLKLREVLHEHFQRHATAQSSTRAIVFTQYRTSVTEIVNVLNALAPLLKVQPFVGQGTSKESK--------GQTQKQQQEIVRKFRQGAFNVLVATCIAEEGLDIGEVDLIVSFDALTSPVRMIQRMGRTGRKRVGKVIILVTEGDEEKKLARSVAAAKTVSRALTTFKNKFT-YAKCPRMV--PMGVTPQLSALAMEIPEFHASQIAG 719          
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Match: A0A484DTL9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTL9_BRELC)

HSP 1 Score: 169 bits (429), Expect = 3.530e-44
Identity = 100/219 (45.66%), Postives = 137/219 (62.56%), Query Frame = 1
Query:  160 SLMHPKIIKLMQVLGDHFSRYQV---STRAIVFTNNRSSVDELLVHLKKL-DLVQALPFVGQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLDIGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHAMIQHRRISSGLKSGLRSFAMYRDNPVMVWAPNTPP----PALSEVSLELDEFRSSQVGG 792
            ++ HPK++KL +VL +HF R+     STRAIVFT  R+SV E++  L+ L  +V A PF+GQ  S  A +       GQ+Q+ QQE + +FR+G+ NVLVATCI EEGLDIG VDL+V +D++ SPVRM+QRLGRTGRKR G+ + L TEG E KK         R +S  K+  R+   Y+   +    P   P    P L E+ +++  F +SQVGG
Sbjct:  540 TVSHPKLLKLREVLLEHFQRHDAGASSTRAIVFTQFRASVSEIVALLRPLAPIVNAQPFIGQGASGKAKENK-----GQSQKVQQEIVRRFRKGDFNVLVATCIAEEGLDIGEVDLIVSFDALTSPVRMIQRLGRTGRKRVGNVIILVTEGDEQKKLM-------RSTSAAKTVSRALTTYKSRFIFAKCPRMLPTGIYPQLRELEMKIPTFHASQVGG 746          
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Match: A0A662WMH0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMH0_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.620e-44
Identity = 102/212 (48.11%), Postives = 134/212 (63.21%), Query Frame = 1
Query:  169 HPKIIKLMQVLGDHFSRYQV---STRAIVFTNNRSSVDELLVHLKKLD-LVQALPFVGQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLDIGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHAMIQHRRISSGLKSGLRSFAMYRDNPVMVWAPNTPPPALSEVSLELDEFRSSQVGG 792
            HPK+ KL +VL +HF R+     STRAIVFT  R+SV E++  L+ L  L+ A PFVGQ  S  A +       GQ+Q+ QQE + KFR+GE NVLVATCI EEGLDIG VDL+V +D++ SPVRM+QR+GRTGRKR G  + L TEG E KK   +    + +S  L +    F  Y   P M+  P+   P LSE+++ +  F +SQV G
Sbjct:  605 HPKLTKLREVLHEHFQRHAAGNSSTRAIVFTQYRASVVEIVALLRALSPLINAQPFVGQGASGKAKENK-----GQSQKLQQEIVHKFRQGEFNVLVATCIAEEGLDIGEVDLIVSFDALTSPVRMIQRMGRTGRKRVGKVIILVTEGDEEKKLARSASAAKTVSRALTTFKNKFT-YSKCPRML--PSGIRPQLSELAMNIPVFHASQVAG 808          
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Match: A0A2P6NE16_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NE16_9EUKA)

HSP 1 Score: 168 bits (426), Expect = 8.720e-44
Identity = 102/236 (43.22%), Postives = 145/236 (61.44%), Query Frame = 1
Query:    1 LQNLTTAGSMPFHQSLRDIQ--ARAAENPLKQALVKGRPWQLLMGKLNSLERRGKSLMHPKIIKLMQVLGDHFSRY---QVSTRAIVFTNNRSSVDELLVHL-KKLDLVQALPFVGQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLDIGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHAMIQHRRISSGLKSGLRSFAMY 690
            LQ L++ G   F Q L++IQ  A      +K+  VK + W+ L+   + +  RG +  HPKI KL +VL +HF+R+     STRA+VF   R SV+E++  L K   LV+A PF+GQA SK+  +G       QNQ++Q   + +F+ G  N LVATCIGEEGLDIG VDL+V +D+  +P R +QR+GRTGRKR G CV L TEG E   ++ ++I+ R +  G+ S  + F  Y
Sbjct:  447 LQLLSSHGLASFTQRLKNIQKEAETGTGKMKKNFVKSQNWKQLLSLADEVTDRGNN--HPKINKLAEVLAEHFTRHAEESTSTRAMVFVQFRDSVEEIVGVLGKHAPLVKAAPFIGQAVSKSGSKG-------QNQKEQGRIVSQFKTGFYNTLVATCIGEEGLDIGDVDLIVLFDTQKTPTRNIQRMGRTGRKRDGRCVVLLTEGAEESSYEQSIIK-RGVVGGILSKPQKFQYY 672          
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Match: A0A6G0X567_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X567_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.200e-43
Identity = 110/271 (40.59%), Postives = 159/271 (58.67%), Query Frame = 1
Query:   10 LTTAGSMPFHQSLRDIQARAAENPLKQALVKGRPWQLLMGKLNSLERRG--KSLMHPKIIKLMQVLGDHFSRYQV---STRAIVFTNNRSSVDELLVHLKKLD-LVQALPFVGQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLDIGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHAMIQHRRISSGLKSGLRSFAMYRDN----PVMVWAPNTPPPALSEVSLELDEFRSSQVGG 792
            L   G   F   L + QA +   P K  L+ G P    + +L   +  G   +  +PK+++L QVL +HF+R+     STR+IVFT  R SV E++  L  ++ L++  PF+GQ +SK    G DG    Q Q++QQE + KFR+GE NVLVATCI EEGLDIG VDL+V +D + SPVRM+QR+GRTGRKR G  V L TEG E KK + ++       +  KS  RS  +++D     P     P+   P ++E ++ +  F++S++GG
Sbjct:  323 LNVHGIGNFKTFLENFQAESPSGPKK--LLLGSPEYAQLVQLVETQAAGGRSAANNPKLVQLQQVLSEHFNRHVQGGSSTRSIVFTQYRESVSEIVALLSSMEPLIKVKPFIGQGSSK----GKDG----QTQKQQQEIVTKFRQGEFNVLVATCIAEEGLDIGEVDLIVSFDCLTSPVRMIQRMGRTGRKRVGRVVLLVTEGDEEKKLERSV-------AAAKSVNRSLTIFKDKFKCVPSARMVPSGIIPKVTESAMVVPTFQASRIGG 576          
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Match: D0NFP0_PHYIT (DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NFP0_PHYIT)

HSP 1 Score: 167 bits (422), Expect = 1.900e-43
Identity = 100/212 (47.17%), Postives = 134/212 (63.21%), Query Frame = 1
Query:  169 HPKIIKLMQVLGDHFSRYQV---STRAIVFTNNRSSVDELLVHLKKL-DLVQALPFVGQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLDIGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHAMIQHRRISSGLKSGLRSFAMYRDNPVMVWAPNTPPPALSEVSLELDEFRSSQVGG 792
            HPK++KL QVL +HF R+     STRAIVFT  R+SV E++  L+ L  L+ A PF+GQ  +  A +       GQ+Q+ QQE + +FR GE NVLVATCI EEGLDIG VDL+V +D++ SPVRM+QR+GRTGRKR G  + L TEG E KK   +    + +S  L +  +S   Y   P M+  P    P L E+ +++  F +SQVGG
Sbjct:  508 HPKLVKLRQVLLEHFQRHSAGGSSTRAIVFTQYRASVSEIVALLRPLAPLLNAQPFIGQGATGKAKENK-----GQSQKVQQEIVRRFRLGEFNVLVATCIAEEGLDIGEVDLIVSFDALTSPVRMIQRMGRTGRKRVGRVIILVTEGDEQKKLARSASAAKTVSRALTT-FKSRFTYSKCPRMI--PTGICPQLRELEMKIPTFHASQVGG 711          
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Match: G4Z323_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z323_PHYSP)

HSP 1 Score: 167 bits (422), Expect = 2.270e-43
Identity = 101/230 (43.91%), Postives = 136/230 (59.13%), Query Frame = 1
Query:  115 QLLMGKLNSLERRGKSLMHPKIIKLMQVLGDHFSRYQV---STRAIVFTNNRSSVDELLVHLKKLD-LVQALPFVGQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLDIGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHAMIQHRRISSGLKSGLRSFAMYRDNPVMVWAPNTPPPALSEVSLELDEFRSSQVGG 792
            +L +G          +  HPK++KL +VL +HF R+     STRAIVFT  R SV E++  L+ L  L+   PF+GQ +S  + +       GQ Q+ QQE + +FR GE NVLVATCI EEGLDIG VDL+V +D++ SPVRM+QR+GRTGRKR G  + L TEG E KK   +    + +S  L +    F  Y   P M+  P    PAL E+ + +  F +SQVGG
Sbjct:  554 ELSLGVTEGATSSANTASHPKLVKLREVLLEHFQRHSAAGSSTRAIVFTQYRVSVSEIVALLRPLSPLLNVQPFIGQGSSGKSKENK-----GQTQKVQQEIVRRFRLGEFNVLVATCIAEEGLDIGEVDLIVSFDALTSPVRMIQRMGRTGRKRVGRVIILVTEGDEQKKLARSASAAKTVSRALTTYKNKFK-YSKCPRMI--PTGICPALKELEMNIPTFHASQVGG 775          
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Match: W2QKT9_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2QKT9_PHYPN)

HSP 1 Score: 167 bits (422), Expect = 3.050e-43
Identity = 100/212 (47.17%), Postives = 133/212 (62.74%), Query Frame = 1
Query:  169 HPKIIKLMQVLGDHFSRYQV---STRAIVFTNNRSSVDELLVHLKKL-DLVQALPFVGQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLDIGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHAMIQHRRISSGLKSGLRSFAMYRDNPVMVWAPNTPPPALSEVSLELDEFRSSQVGG 792
            HPK++KL +VL +HF R+     STRAIVFT  R+SV E++  L+ L  L+   PF+GQ  S  A +       GQ+Q+ QQE + +FR GE NVLVATCI EEGLDIG VDL+V +D++ SPVRM+QR+GRTGRKR G  + L TEG E KK   +    + +S  L +    FA Y   P M+  P    P L E+ +++  F +SQVGG
Sbjct:  552 HPKLVKLREVLLEHFQRHAAGGSSTRAIVFTQYRASVSEIVALLRPLAPLLNVQPFIGQGASGKAKENK-----GQSQKVQQEIVRRFRLGEFNVLVATCIAEEGLDIGEVDLIVSFDALTSPVRMIQRMGRTGRKRVGRVIILVTEGDEQKKLARSASAAKTVSRALTTFKSRFA-YSKCPRMI--PTGITPQLRELEMKIPTFHASQVGG 755          
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Match: A0A833SYU5_PHYIN (PHD-zinc-finger like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SYU5_PHYIN)

HSP 1 Score: 167 bits (422), Expect = 3.060e-43
Identity = 100/212 (47.17%), Postives = 134/212 (63.21%), Query Frame = 1
Query:  169 HPKIIKLMQVLGDHFSRYQV---STRAIVFTNNRSSVDELLVHLKKL-DLVQALPFVGQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLDIGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHAMIQHRRISSGLKSGLRSFAMYRDNPVMVWAPNTPPPALSEVSLELDEFRSSQVGG 792
            HPK++KL QVL +HF R+     STRAIVFT  R+SV E++  L+ L  L+ A PF+GQ  +  A +       GQ+Q+ QQE + +FR GE NVLVATCI EEGLDIG VDL+V +D++ SPVRM+QR+GRTGRKR G  + L TEG E KK   +    + +S  L +  +S   Y   P M+  P    P L E+ +++  F +SQVGG
Sbjct:  563 HPKLVKLRQVLLEHFQRHSAGGSSTRAIVFTQYRASVSEIVALLRPLAPLLNAQPFIGQGATGKAKENK-----GQSQKVQQEIVRRFRLGEFNVLVATCIAEEGLDIGEVDLIVSFDALTSPVRMIQRMGRTGRKRVGRVIILVTEGDEQKKLARSASAAKTVSRALTT-FKSRFTYSKCPRMI--PTGICPQLRELEMKIPTFHASQVGG 766          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10734.992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WDN7_GLOUD2.890e-4747.47Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CNQ3_PYTOL5.540e-4547.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484DTL9_BRELC3.530e-4445.66Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A662WMH0_9STRA6.620e-4448.11Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A2P6NE16_9EUKA8.720e-4443.22Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A6G0X567_9STRA1.200e-4340.59Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D0NFP0_PHYIT1.900e-4347.17DEAD/DEAH box RNA helicase, putative n=1 Tax=Phyto... [more]
G4Z323_PHYSP2.270e-4343.91Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
W2QKT9_PHYPN3.050e-4347.17Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A833SYU5_PHYIN3.060e-4347.17PHD-zinc-finger like domain n=1 Tax=Phytophthora i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10734contigS-firma_F_contig10734:101..955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog65071.PYU1_T003078
PFAMsHelicase_C,ResIII
Max annot lvl121069|Pythiales
Evalue3.53e-48
EggNOG OGsCOG1111@1|root,KOG0354@2759|Eukaryota,1MF4K@121069|Pythiales
DescriptionDEAD DEAH box RNA helicase. Source PGD
COG categoryA
Hectar predicted targeting categoryother localisation
Exons2
Model size792
Cds size765
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10734.992.1prot_S-firma_F_contig10734.992.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10734 128..955 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.7222404-UTR-S-firma_F_contig10734:100..1271622815614.7222404-UTR-S-firma_F_contig10734:100..127Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10734 101..127 +
1696949455.1668935-UTR-S-firma_F_contig10734:100..1271696949455.1668935-UTR-S-firma_F_contig10734:100..127Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10734 101..127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.7330606-CDS-S-firma_F_contig10734:127..4121622815614.7330606-CDS-S-firma_F_contig10734:127..412Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10734 128..412 +
1696949455.1786282-CDS-S-firma_F_contig10734:127..4121696949455.1786282-CDS-S-firma_F_contig10734:127..412Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10734 128..412 +
1622815614.7445781-CDS-S-firma_F_contig10734:475..9551622815614.7445781-CDS-S-firma_F_contig10734:475..955Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10734 476..955 +
1696949455.1880746-CDS-S-firma_F_contig10734:475..9551696949455.1880746-CDS-S-firma_F_contig10734:475..955Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10734 476..955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10734.992.1

>prot_S-firma_F_contig10734.992.1 ID=prot_S-firma_F_contig10734.992.1|Name=mRNA_S-firma_F_contig10734.992.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=255bp
MPFHQSLRDIQARAAENPLKQALVKGRPWQLLMGKLNSLERRGKSLMHPK
IIKLMQVLGDHFSRYQVSTRAIVFTNNRSSVDELLVHLKKLDLVQALPFV
GQANSKAAMQGVDGAVGGQNQRKQQETIDKFRRGEANVLVATCIGEEGLD
IGAVDLVVFYDSVGSPVRMMQRLGRTGRKRSGSCVCLCTEGTEVKKFQHA
MIQHRRISSGLKSGLRSFAMYRDNPVMVWAPNTPPPALSEVSLELDEFRS
SQVGG
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mRNA from alignment at S-firma_F_contig10734:101..955+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10734.992.1 ID=mRNA_S-firma_F_contig10734.992.1|Name=mRNA_S-firma_F_contig10734.992.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=855bp|location=Sequence derived from alignment at S-firma_F_contig10734:101..955+ (Sphaerotrichia firma ET2_F female)
CTCCAGAACCTGACCACCGCCGGCTCCATGCCGTTTCACCAATCCCTGCG GGACATCCAGGCCCGGGCCGCCGAGAACCCCTTGAAGCAGGCCTTGGTGA AGGGCAGGCCGTGGCAACTCCTCATGGGCAAGCTGAACTCGTTGGAGCGG CGGGGCAAGTCCCTCATGCACCCCAAAATCATCAAGCTGATGCAGGTCCT GGGGGACCACTTTTCGCGGTACCAAGTCAGCACCCGGGCCATTGTGTTCA CCAACAACCGCTCCTCCGTGGACGAGCTCCTGGTCCACCTGAAGAAGCTG GACCTGGTGCAGGTTGGTGCCAAGCGCGGGCTTGTTGGTGTGTGCTGGCT TGTAATGTTTGTGACCCCCCCCCAGGCGCTGCCGTTTGTGGGGCAAGCCA ACAGCAAGGCCGCCATGCAGGGCGTTGACGGTGCCGTCGGCGGCCAAAAC CAGCGCAAACAGCAGGAAACCATTGACAAGTTCCGCCGGGGGGAGGCCAA CGTCCTGGTGGCGACGTGCATCGGGGAGGAGGGCCTGGACATTGGCGCCG TGGACCTGGTGGTGTTTTACGACTCCGTCGGCTCCCCCGTCCGCATGATG CAGCGCCTGGGCCGCACCGGCCGCAAGCGGAGCGGCAGCTGCGTGTGCCT CTGCACCGAGGGCACCGAAGTCAAAAAGTTCCAGCACGCCATGATCCAGC ACCGACGGATTTCCTCCGGCCTCAAAAGTGGCCTCCGGTCCTTTGCCATG TACCGCGACAACCCCGTCATGGTGTGGGCCCCAAACACGCCGCCGCCCGC CCTATCGGAGGTCTCCCTGGAGTTGGACGAGTTCCGGTCGTCCCAAGTCG GGGGT
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Coding sequence (CDS) from alignment at S-firma_F_contig10734:101..955+

>mRNA_S-firma_F_contig10734.992.1 ID=mRNA_S-firma_F_contig10734.992.1|Name=mRNA_S-firma_F_contig10734.992.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1530bp|location=Sequence derived from alignment at S-firma_F_contig10734:101..955+ (Sphaerotrichia firma ET2_F female)
ATGCCGTTTCACCAATCCCTGCGGGACATCCAGGCCCGGGCCGCCGAGAA
CCCCTTGAAGCAGGCCTTGGTGAAGGGCAGGCCGTGGCAACTCCTCATGG
GCAAGCTGAACTCGTTGGAGCGGCGGGGCAAGTCCCTCATGCACCCCAAA
ATCATCAAGCTGATGCAGGTCCTGGGGGACCACTTTTCGCGGTACCAAGT
CAGCACCCGGGCCATTGTGTTCACCAACAACCGCTCCTCCGTGGACGAGC
TCCTGGTCCACCTGAAGAAGCTGGACCTGGTGCAGATGCCGTTTCACCAA
TCCCTGCGGGACATCCAGGCCCGGGCCGCCGAGAACCCCTTGAAGCAGGC
CTTGGTGAAGGGCAGGCCGTGGCAACTCCTCATGGGCAAGCTGAACTCGT
TGGAGCGGCGGGGCAAGTCCCTCATGCACCCCAAAATCATCAAGCTGATG
CAGGTCCTGGGGGACCACTTTTCGCGGTACCAAGTCAGCACCCGGGCCAT
TGTGTTCACCAACAACCGCTCCTCCGTGGACGAGCTCCTGGTCCACCTGA
AGAAGCTGGACCTGGTGCAGGCGCTGCCGTTTGTGGGGCAAGCCAACAGC
AAGGCCGCCATGCAGGGCGTTGACGGTGCCGTCGGCGGCCAAAACCAGCG
CAAACAGCAGGAAACCATTGACAAGTTCCGCCGGGGGGAGGCCAACGTCC
TGGTGGCGACGTGCATCGGGGAGGAGGGCCTGGACATTGGCGCCGTGGAC
CTGGTGGTGTTTTACGACTCCGTCGGCTCCCCCGTCCGCATGATGCAGCG
CCTGGGCCGCACCGGCCGCAAGCGGAGCGGCAGCTGCGTGTGCCTCTGCA
CCGAGGGCACCGAAGTCAAAAAGTTCCAGCACGCCATGATCCAGCACCGA
CGGATTTCCTCCGGCCTCAAAAGTGGCCTCCGGTCCTTTGCCATGTACCG
CGACAACCCCGTCATGGTGTGGGCCCCAAACACGCCGCCGCCCGCCCTAT
CGGAGGTCTCCCTGGAGTTGGACGAGTTCCGGTCGTCCCAAGTCGGGGGT
GCGCTGCCGTTTGTGGGGCAAGCCAACAGCAAGGCCGCCATGCAGGGCGT
TGACGGTGCCGTCGGCGGCCAAAACCAGCGCAAACAGCAGGAAACCATTG
ACAAGTTCCGCCGGGGGGAGGCCAACGTCCTGGTGGCGACGTGCATCGGG
GAGGAGGGCCTGGACATTGGCGCCGTGGACCTGGTGGTGTTTTACGACTC
CGTCGGCTCCCCCGTCCGCATGATGCAGCGCCTGGGCCGCACCGGCCGCA
AGCGGAGCGGCAGCTGCGTGTGCCTCTGCACCGAGGGCACCGAAGTCAAA
AAGTTCCAGCACGCCATGATCCAGCACCGACGGATTTCCTCCGGCCTCAA
AAGTGGCCTCCGGTCCTTTGCCATGTACCGCGACAACCCCGTCATGGTGT
GGGCCCCAAACACGCCGCCGCCCGCCCTATCGGAGGTCTCCCTGGAGTTG
GACGAGTTCCGGTCGTCCCAAGTCGGGGGT
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