mRNA_S-firma_F_contig10733.991.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10733.991.1
Unique NamemRNA_S-firma_F_contig10733.991.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Match: A0A7S1CHP2_9STRA (Beta-N-acetylhexosaminidase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHP2_9STRA)

HSP 1 Score: 254 bits (650), Expect = 1.740e-77
Identity = 141/311 (45.34%), Postives = 186/311 (59.81%), Query Frame = 1
Query:    1 YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLMAHGLEFCDDTKSLLFNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHEFERSLQAAVQDMKRQPAVWNEVFSNPPASIPNGAA------RWVGGEG------WWFNCNKLTHTQW--HHC-----------NRFKQCFYFDIATGVAASDLHLMTGGETAMWTDMYCGAPHCPQQGPWAQWYTAAYDKEFSKSFASLTFPRAAAAAGSFWHFDATLATDSPQYLALIDNHNRRWVLARGSTTCPVNCACDWNSKCGKPY 858
            Y+  D AEL AYA ARG+RIVPEIDVP+H+ GFAPL A GL+FCD+ K  + ND A    L LV  VL AV  AFP+   H+GGDET     C++  IH FE ++QA +  + R    WNEV+S+PPA+ PN          W G +        +   +   +TQ+    C            + +QCFY DI+ G+ A D   + GGETAMW D+YCGAP+CP QG +A  Y ++ D  FS S+  +T+PRAAAAAG+FW+++ + A +   Y   ID HNRR + ARG  +CP  C CDW S+CGKPY
Sbjct:  156 YSQADCAELAAYAAARGVRIVPEIDVPSHARGFAPLEARGLQFCDERKLQIHND-AQGVGLSLVKVVLSAVAAAFPERKIHVGGDETRNNSLCTWESIHAFETAVQAHITALGRAAIAWNEVYSDPPATEPNALGVGTMVQNWHGADSVATTSQGFETLSSNYNTQYLDQQCCAAGAYVPTAGAKTRQCFYEDISAGMTAGDRSKLYGGETAMWGDLYCGAPNCPDQGQFAWMYPSSADAAFSASWMGMTWPRAAAAAGAFWNYNDSAAIE---YDCAIDVHNRR-LRARGVDSCPPGCNCDWGSRCGKPY 461          
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Match: A0A7S2U325_9EUKA (Beta-N-acetylhexosaminidase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U325_9EUKA)

HSP 1 Score: 181 bits (459), Expect = 6.850e-51
Identity = 115/311 (36.98%), Postives = 159/311 (51.13%), Query Frame = 1
Query:    1 YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLMAHGLEFCDD--TKSLLFNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHEFERSLQAAVQ-DMKRQPAVWNEV-FSNPPASIPNGAARWVGGEGWWFNCNKLTHTQWHHCNRFKQCFYF----------------DIATGVAASDLHLMTGGETAMWTDMYCGAPHCPQQ--GPW---AQWYTAAYDKEFSKSFASLTFPRAAAAAGSFWHFDATLATDSPQYLALIDNHNRRWVLARGSTTCPVNCACDWNSKCGKPY 858
            YT +D   +++YA  RGIR+VPE DVP HS GF PL   G+ FC+D  T++ LF+DP    T  +V +V++ +   F D +F++G DE    G+C+      FER L  AV+ +  + PA W EV FS   A+       W          + +T T         + FYF                DIATGV AS   L+ GGE +MWTD YC    C     GP    A  +  A+D+ F+KS   + +PR   AAG+FW+FDAT    +P ++  I   N   +  RG+ TCP  C+CD  + CGKPY
Sbjct:   90 YTQEDVKSIISYAGDRGIRVVPEFDVPGHSRGFRPLKGKGVHFCEDEETQTQLFDDPE-GQTYAVVHEVMEEMAGLFTDEVFNIGCDEAYVKGRCTLNSTFSFERRLLNAVKSEFGKTPAGWEEVLFSADAATNDTIVDAWSH-----VKASNITATGRRAIESHNEAFYFTEAAPGGPDGWKECWYDIATGVPASQRSLLLGGEMSMWTDTYCVEEQCGADSGGPTPVGAALFDPAHDEAFAKSIGGMIWPRGYVAAGAFWNFDATKDPTAPGFVESIWAFNDM-LAKRGALTCPTKCSCDQLNACGKPY 393          
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Match: A0A7S4DXL4_9EUKA (Beta-hexosaminidase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXL4_9EUKA)

HSP 1 Score: 172 bits (436), Expect = 3.070e-46
Identity = 113/318 (35.53%), Postives = 156/318 (49.06%), Query Frame = 1
Query:    1 YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLMAHGLEFCDD--TKSLLFNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHEFERSLQAAVQ-DMKRQPAVWNEV-FSNPPASIPNGAARWVGGEGWWFNCNKLTHTQWHHCNRFKQCFYF----------------DIATGVAASDLHLMTGGETAMWTDMYCGAPHC-------PQQGPWAQWYTAAYDKEFSKSFASLTFPRAAAAAGSFWHFDATLATDSPQYLALIDNHNRRWVL-----ARGSTTCPVNCACDWNSKCGKPY 858
            YT  D  ++++YA  RGIR+VPE DVP HS GF PL + G+ FC+D   +S LF+DP    T  +V  V++ + E F D +F++G DE    G+CS     +FER L  A+  +  + PA W EV FS   A+       W   +      + +T             FYF                DI+TGV  S   L+ GGE +MWTD YC    C       P  G  A  +  A+D  F+KS   + +PR   AAG+FW+FDA+    +P ++  I      W L      RG+ TCP +C+CD    CGKPY
Sbjct:  241 YTQDDVKDMISYAGDRGIRVVPEFDVPGHSRGFRPLKSAGVHFCEDDEAQSQLFDDPE-GETYAVVHDVMEEMAELFTDEIFNIGCDEAYVKGRCSLNSTFDFERRLLNAISNEFGKTPAGWEEVLFSADAATNDTIVDAWSEVQA-----SNITAKGHMAIESHSYAFYFTEAVPGGPEGWEDCWYDISTGVPQSQRSLLLGGEMSMWTDTYCIEEQCGAFPGGPPPVG--AALFDPAHDDAFAKSIGGMIWPRGYVAAGAFWNFDASKDPAAPDFVKGI------WALNDLLSKRGALTCPTDCSCDQLHACGKPY 544          
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Match: A7T3N0_NEMVE (Beta-hexosaminidase n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7T3N0_NEMVE)

HSP 1 Score: 169 bits (428), Expect = 3.040e-45
Identity = 103/299 (34.45%), Postives = 157/299 (52.51%), Query Frame = 1
Query:    1 YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLMAHGLEFCDDTK-SLLFNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHEFERSLQAAVQDMKRQPAVWNEVFSNPPASIPNGAARWVGGEGW-------WFNCNKLT-HTQWHHCNRFKQCFYFDIATGVAASDLHLMTGGETAMWTDMYCGAPHCP---QQGPWAQW-YTAAYDKEFSKSFASLTFPRAAAAAGSFWHFDATLATDSPQYLALIDNHNRRWVLARGSTTCPVNCACDWNSKCGKPY 858
            YT  D   LVAYA+ RGIR++PE++  AH+ G   L   GL+FC+ +  + L+NDP  NT LK +  +L  +   FP+ +FHLG DE      C+   +  FE +LQ  +  + + PA W E  S+  +       +    EG         F  N L+ H   ++        + DIA G+  +++  + GGE AMWTD YC    C       P A W Y   +D  F++S A + +PRA   AGSFW++++ L+ DS ++       ++R ++ RG  +CPV C+CD  ++CGKPY
Sbjct:  227 YTQDDVRNLVAYARDRGIRVMPEVEGAAHANGLLGLKNKGLQFCNHSGYTQLYNDPQGNT-LKTMKAILSEMVPLFPEQIFHLGLDEVFTDKNCTLQSLQSFELALQEHLLQLGKIPAAWEEALSSTKSVTNRTVIQAWKAEGIKTIVDLKQFAINSLSSHFYLNYMGVTPLQLWTDIAVGLNETEVQYLLGGEMAMWTDNYCYILECAYPLSAKPSAYWMYDPLHDGTFTQSVAGIIWPRAVVGAGSFWNYNSDLSADSAEFNMRYQGQHKR-LIERGIISCPVGCSCDELTRCGKPY 523          
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Match: A0A6P8INP9_ACTTE (Beta-hexosaminidase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8INP9_ACTTE)

HSP 1 Score: 164 bits (415), Expect = 1.980e-43
Identity = 106/307 (34.53%), Postives = 153/307 (49.84%), Query Frame = 1
Query:    1 YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLM--AHGLEFCDDTKSL-LFNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHEFERSLQAAVQDMKRQPAVWNEVFSNPPASIPNGAARWVGGEGWWFNCNKLTHTQWHHC-NRFKQCFYF-------------DIATGVAASDLHLMTGGETAMWTDMYCGAPHCPQQG---PWAQW-YTAAYDKEFSKSFASLTFPRAAAAAGSFWHFDATLATDSPQYLALIDNHNRRWVLARGSTTCPVNCACDWNSKCGKPY 858
            Y+  D   LVAYA+ RGIR+VPE++   H+ G   L     G++FC+ +  L LFNDP    TL  +  +L  +   FPD LFHLG DET     C+   +   E +L   V  + +    W E FS   +++ +        + W     K    + H   N     FY              DI++G++  ++ L+ GGE AMWTD YC    C  +    P A W Y   +D +F++S + L +PRA   AGSFW++D  L  ++  ++   D  NRR +  RG  TCPV C CD+ +KCGKPY
Sbjct:  216 YSQDDVKNLVAYARDRGIRVVPEVEAAGHANGLMGLYNKTKGVKFCNSSGFLELFNDPQ-GVTLTTMRGILSEMMSLFPDELFHLGLDETFNDQNCTSDNVRSLETALLEYVA-LNKTTVAWEEAFSITASALNSTIV-----QAWKSESVKTIIDKKHRAINSLSSHFYLNYAQSVTPETLWTDISSGLSPQEVELLLGGEMAMWTDYYCYISECCYRHNTKPQAWWMYDPTHDAQFTQSVSGLIWPRAVVGAGSFWNYDPDLKPETADFVLRYDAMNRR-LQERGILTCPVGCKCDYLTKCGKPY 514          
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Match: A0A0M0K0D8_9EUKA (Beta-N-acetylhexosaminidase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0D8_9EUKA)

HSP 1 Score: 159 bits (401), Expect = 3.430e-41
Identity = 104/310 (33.55%), Postives = 152/310 (49.03%), Query Frame = 1
Query:    1 YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLMAHG-LEFCDDT------KSLLFNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHEFERSLQAAVQ-DMKRQPAVWNEVFSNPPASIPNGAAR-WVGGEGWWFNCNKLTHTQWHHCN-RFKQCF----------YFDIATGVAASDLHLMTGGETAMWTDMYCGAPHCPQQGP----WAQWYTAAYDKEFSKSFASLTFPRAAAAAGSFWHFDATLATDSPQYLALIDNHNRRWVLARGSTTCPVNCACDWNSKCGKPY 858
            YT  D  E+++YA  RGIR+VPE DVP HS G  PL   G ++FC+        +  L+NDPA   + + V  +L+ + + FPD + HLG DET  VG C+     EFER L  AV  +  + P  W E++ +  A+  +     W   E            + H  N  F Q            Y DI   V A+   L+ GGE +MWTD YC    C   G      ++ +    D EF+ S   + +PR    A +FWH++A+++     ++  I + N + + ARGS TCP  C+CD  S CG+P+
Sbjct:   80 YTQDDITEMISYASDRGIRVVPEFDVPGHSGGLLPLSGPGGIQFCESGSRPSSGRGQLYNDPA-GKSYQTVHALLEEMSDLFPDEVMHLGCDETSVVGPCTLDSTFEFERKLATAVAVEFGKTPEGWEEIYFDAGAATNDTIVNAWSRHEAPDVTTTGRRAVESHSGNFYFTQAVPGGPDGWHMVYHDIGANVPAAQKSLLLGGEMSMWTDTYCYISQCGFGGSSLPVGSKLFGPERDHEFAASVGGMIWPRGFVGAQAFWHYNASVSPYDNDFVQAIWDVNEQ-LRARGSLTCPSKCSCDQMSACGQPF 387          
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Match: A0A7S0FD30_9DINO (Beta-hexosaminidase n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FD30_9DINO)

HSP 1 Score: 155 bits (392), Expect = 9.200e-40
Identity = 105/315 (33.33%), Postives = 150/315 (47.62%), Query Frame = 1
Query:    1 YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLMAHGLEFC----DDTKSLLFNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHEFERSLQAAVQ-DMKRQPAVWNEV---------------FSNPPASIPNGAARWV----GGEGWWFNCNKLTHTQWHHCNRFKQCFYFDIATGVAASDLHLMTGGETAMWTDMYC-----GAPHCPQQGPWAQWYTAAYDKEFSKSFASLTFPRAAAAAGSFWHFDATLATDSPQYLALIDNHNRRWVLARGSTTCPVNCACDWNSKCGKPY 858
            YT  D  EL+AYAK RGIR+VPE D+P H+ G  PL   GL+FC    D+T+  L+NDP    TL+++  +L  +   F D +F++G DET   G C+        R +   V+    + P  W E+               +S+  AS      R V        ++        T W  C       ++DI TGV  S   L+ GG+ +MW+D YC      A  CP+    A  +    D+ F +S   + +PR   AA SFW++D      SP+++  +   N R + ARGS  CP  CACD  S CG+PY
Sbjct:  274 YTQADIKELIAYAKQRGIRVVPEFDIPGHARGLGPLKPAGLKFCSRSTDETQ--LYNDPE-GLTLRILNGLLAEMSALFEDDVFNIGSDETETRGFCTGESTFPLARHMVDTVRRQYSKTPEGWEEILFTEQAATQDTIVNAWSSHDASAVTAKGRRVVESAAAHFYFTEAAPAGATGWSPC-------HYDIGTGVPQSQQALLLGGQISMWSDTYCYECQCRAFSCPKPVA-AALFPPEADEAFMRSIGGMIWPRGFVAAASFWNYDPLADPTSPEFVGRVHQLNDR-LAARGSVVCPTGCACDQLSACGRPY 576          
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Match: A0A5A8E7K7_CAFRO (Beta-N-acetylhexosaminidase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E7K7_CAFRO)

HSP 1 Score: 147 bits (372), Expect = 1.250e-36
Identity = 105/307 (34.20%), Postives = 156/307 (50.81%), Query Frame = 1
Query:    1 YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLMAHGLEFCDDTKSLL---FNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHEFERSLQAAVQD-MKRQPAVWNEV-FSNPPAS---IPNGAARW----VGGEGWWFNCNKLTHTQWHHCNRFKQCFYFDIATGVAASDLHLMTGGETAMWTD-----MYCGAPHCPQQGPWAQWYTAAYDKEFSKSFASLTFPRAAAAAGSFWHFDATLATDSP----QYLALIDNHNRRWVLARGSTTCPVNCACDWNSKCGKPY 858
            Y+  + A+LVAYA  RG+RI+PE+D+P H+ G AP  A+GLEFC      L   F+DPA  +   ++  +L  +   FPD L H+G DET   G+C        E      VQ  + R P  W E+ F +  AS   + N  AR+    V  +G+    +  +H   ++ ++     + DIA G++   L L+ GGE ++WTD       CGA   P     A  +  A D+ F+ +   + +PRAA A GSFW +DA++    P    +Y A+ D   RR V A     CP  C+CD+  +CGK +
Sbjct:  220 YSQAEVADLVAYAADRGVRIMPEVDLPGHAKGLAPAQAYGLEFCQTGSGPLTQIFDDPAGKSR-GVLGGLLSELSPLFPDELLHIGADETAVKGRCPESGTSSLESWAVGLVQKGLGRTPVGWEEILFDSHAASNGTVVNAWARYTAVDVVKKGYRAIESASSHFYLNYVSQPYSGMWRDIAPGLSGQQLALVLGGEASIWTDDTCIVEQCGAAAGPPPSGHAL-FPPAMDQPFATAIHGIVWPRAAVALGSFWGYDASVQASDPAFVDRYRAVGDRLLRRSVPA-----CPDACSCDYTQRCGKSF 519          
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Match: A0A7J6QQF0_PEROL (Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QQF0_PEROL)

HSP 1 Score: 84.0 bits (206), Expect = 1.700e-15
Identity = 47/148 (31.76%), Postives = 72/148 (48.65%), Query Frame = 1
Query:    1 YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLMAHGLEFC---------DDTKSLLFNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHEFERSLQAAVQDMKRQPAVWNEVFSNPPASIPNGAARWVG 417
            ++  +   L+ YA  RGIR+VPE+D+P H      L+  GL+ C         D TK   F D     T ++V ++L AV   FPD  FH+G DET P+G C+   +   E  +   +Q + R+P  W E+       +   A++  G
Sbjct:   22 WSTTEVTALIQYAGLRGIRVVPEVDMPGHVNALGGLVGAGLQLCRSSADGRAEDATK---FYDDQEGKTREVVGRLLAAVSAIFPDDHFHIGADETEPIGLCTVDNMIALEEFMLEQLQSLGRKPVAWEELVWKTGGKLDAAASKAPG 166          
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Match: A0A7J6MJI8_PERCH (Beta-N-acetylhexosaminidase n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MJI8_PERCH)

HSP 1 Score: 85.1 bits (209), Expect = 7.340e-15
Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 1
Query:    1 YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLMAHGLEFC---------DDTKSLLFNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHEFERSLQAAVQDMKRQPAVWNEV 366
            +T+++ AE + YA+ RG+R+VPE+DVP H      L   G++FC         D TK  L++D     T  ++ ++L A+   FPD  FH+G DET PVG C+   I   E  +   ++ + ++P  W E+
Sbjct:  314 WTLQEVAEFIQYARLRGVRVVPEVDVPGHVNSLEALEGAGMQFCRSSGARHAQDATK--LYDDQE-GMTRDVLGRLLTALASLFPDKYFHIGADETEPVGLCNMDNIISLEMFVLEHLRSLGKKPMAWEEL 441          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10733.991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CHP2_9STRA1.740e-7745.34Beta-N-acetylhexosaminidase n=1 Tax=Bicosoecida sp... [more]
A0A7S2U325_9EUKA6.850e-5136.98Beta-N-acetylhexosaminidase n=1 Tax=Lotharella oce... [more]
A0A7S4DXL4_9EUKA3.070e-4635.53Beta-hexosaminidase n=1 Tax=Lotharella globosa Tax... [more]
A7T3N0_NEMVE3.040e-4534.45Beta-hexosaminidase n=1 Tax=Nematostella vectensis... [more]
A0A6P8INP9_ACTTE1.980e-4334.53Beta-hexosaminidase n=1 Tax=Actinia tenebrosa TaxI... [more]
A0A0M0K0D8_9EUKA3.430e-4133.55Beta-N-acetylhexosaminidase n=1 Tax=Chrysochromuli... [more]
A0A7S0FD30_9DINO9.200e-4033.33Beta-hexosaminidase n=1 Tax=Pyrodinium bahamense T... [more]
A0A5A8E7K7_CAFRO1.250e-3634.20Beta-N-acetylhexosaminidase n=4 Tax=Cafeteria roen... [more]
A0A7J6QQF0_PEROL1.700e-1531.76Beta-N-acetylhexosaminidase (Fragment) n=1 Tax=Per... [more]
A0A7J6MJI8_PERCH7.340e-1534.35Beta-N-acetylhexosaminidase n=1 Tax=Perkinsus ches... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10733contigS-firma_F_contig10733:3707..4935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog45351.EDO29436
PFAMsGlyco_hydro_20
Max annot lvl33154|Opisthokonta
Evalue4.99e-46
EggNOG OGsCOG3525@1|root,KOG2499@2759|Eukaryota,3AKIQ@33154|Opisthokonta
DescriptionGlycosyl hydrolase family 20, catalytic domain
COG categoryG
Hectar predicted targeting categoryother localisation
Exons4
Model size858
Cds size858
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10733.991.1prot_S-firma_F_contig10733.991.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10733 3707..4935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.653789-CDS-S-firma_F_contig10733:3706..37741622815614.653789-CDS-S-firma_F_contig10733:3706..3774Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10733 3707..3774 -
1696949455.124232-CDS-S-firma_F_contig10733:3706..37741696949455.124232-CDS-S-firma_F_contig10733:3706..3774Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10733 3707..3774 -
1622815614.6696343-CDS-S-firma_F_contig10733:3830..41481622815614.6696343-CDS-S-firma_F_contig10733:3830..4148Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10733 3831..4148 -
1696949455.1350577-CDS-S-firma_F_contig10733:3830..41481696949455.1350577-CDS-S-firma_F_contig10733:3830..4148Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10733 3831..4148 -
1622815614.6793277-CDS-S-firma_F_contig10733:4405..46571622815614.6793277-CDS-S-firma_F_contig10733:4405..4657Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10733 4406..4657 -
1696949455.1459668-CDS-S-firma_F_contig10733:4405..46571696949455.1459668-CDS-S-firma_F_contig10733:4405..4657Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10733 4406..4657 -
1622815614.6915407-CDS-S-firma_F_contig10733:4715..49351622815614.6915407-CDS-S-firma_F_contig10733:4715..4935Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10733 4716..4935 -
1696949455.1551096-CDS-S-firma_F_contig10733:4715..49351696949455.1551096-CDS-S-firma_F_contig10733:4715..4935Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10733 4716..4935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10733.991.1

>prot_S-firma_F_contig10733.991.1 ID=prot_S-firma_F_contig10733.991.1|Name=mRNA_S-firma_F_contig10733.991.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=286bp
YTVKDAAELVAYAKARGIRIVPEIDVPAHSAGFAPLMAHGLEFCDDTKSL
LFNDPATNTTLKLVTQVLQAVGEAFPDALFHLGGDETIPVGKCSFGVIHE
FERSLQAAVQDMKRQPAVWNEVFSNPPASIPNGAARWVGGEGWWFNCNKL
THTQWHHCNRFKQCFYFDIATGVAASDLHLMTGGETAMWTDMYCGAPHCP
QQGPWAQWYTAAYDKEFSKSFASLTFPRAAAAAGSFWHFDATLATDSPQY
LALIDNHNRRWVLARGSTTCPVNCACDWNSKCGKPY
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mRNA from alignment at S-firma_F_contig10733:3707..4935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10733.991.1 ID=mRNA_S-firma_F_contig10733.991.1|Name=mRNA_S-firma_F_contig10733.991.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1229bp|location=Sequence derived from alignment at S-firma_F_contig10733:3707..4935- (Sphaerotrichia firma ET2_F female)
TACACCGTCAAGGACGCTGCGGAGCTGGTGGCTTACGCCAAGGCCCGTGG CATCCGCATCGTGCCCGAAATTGACGTCCCTGCGCACAGCGCGGGTTTTG CGCCCCTCATGGCCCATGGCCTTGAGTTTTGTGATGACACCAAGTCCCTC TTGTTCAACGACCCGGCCACCAACACCACCCTGAAGCTCGTCACCCAGGT CCTGCAAGCCGTCGGGGAAGGTGTGCGTTTGTGTGTGAAGTGGGGAAGGG GGGCTTCAACCCAATGCTTGCCCCACAGCCTTCCCGGACGCCCTCTTCCA CCTTGGGGGCGACGAAACCATTCCCGTCGGGAAGTGCTCCTTTGGGGTCA TTCACGAGTTCGAGCGCAGCCTGCAGGCCGCCGTGCAAGACATGAAGCGC CAGCCGGCGGTGTGGAACGAGGTGTTCAGCAACCCACCGGCCAGCATTCC CAACGGCGCTGCGAGGTGGGTTGGTGGGGAGGGTTGGTGGTTTAACTGCA ACAAGCTCACACACACACAGTGGCACCATTGTCCAAAACTGGCACGATTC CGCGTCGGGAACCACCGGTGCGTTGGGGCACATGGTGTGCTTCCCGCCAC CCCCTCATACCCCCTCCCCCCCCCCCTCCCCCCGCCCAGCCAAAGCTGGC TTCCAAAGCCTCGTCTCCACCTATAACCAGCTGTACTTGGACCAGCAGTG CTGCGCTGCAGGGAACGCCCACGCCGCGGACGGTGAGTGGCCTCCACCTC ATTCCGCGCCTGTTGTGACCCCCAACGAAACCATCAGGCAACCGCTTCAA GCAGTGCTTTTACTTTGACATTGCGACGGGCGTCGCCGCCTCTGACCTGC ACCTCATGACGGGTGGCGAAACCGCCATGTGGACAGACATGTACTGCGGC GCGCCGCACTGCCCGCAGCAGGGCCCGTGGGCGCAGTGGTACACTGCCGC TTACGACAAGGAGTTCAGCAAGTCCTTTGCGTCCCTGACGTTCCCCCGGG CGGCGGCCGCCGCTGGCAGCTTCTGGCACTTTGACGCCACCCTGGCGACG GACAGCCCGCAGTACTTGGCGCTCATTGACAACCACAACCGGCGGTGGGT GTTAGGTGTTTTGTCCCCCCCCTCACCCTCTAACCCCCCCCCCCTCCTCC CAGCCTCACAGCACGGGGCTCCACCACCTGCCCCGTCAACTGCGCCTGTG ACTGGAACTCCAAGTGCGGCAAGCCGTAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10733:3707..4935-

>mRNA_S-firma_F_contig10733.991.1 ID=mRNA_S-firma_F_contig10733.991.1|Name=mRNA_S-firma_F_contig10733.991.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1716bp|location=Sequence derived from alignment at S-firma_F_contig10733:3707..4935- (Sphaerotrichia firma ET2_F female)
TACACCGTCAAGGACGCTGCGGAGCTGGTGGCTTACGCCAAGGCCCGTGG
CATCCGCATCGTGCCCGAAATTGACGTCCCTGCGCACAGCGCGGGTTTTG
CGCCCCTCATGGCCCATGGCCTTGAGTTTTGTGATGACACCAAGTCCCTC
TTGTTCAACGACCCGGCCACCAACACCACCCTGAAGCTCGTCACCCAGGT
CCTGCAAGCCGTCGGGGAAGTACACCGTCAAGGACGCTGCGGAGCTGGTG
GCTTACGCCAAGGCCCGTGGCATCCGCATCGTGCCCGAAATTGACGTCCC
TGCGCACAGCGCGGGTTTTGCGCCCCTCATGGCCCATGGCCTTGAGTTTT
GTGATGACACCAAGTCCCTCTTGTTCAACGACCCGGCCACCAACACCACC
CTGAAGCTCGTCACCCAGGTCCTGCAAGCCGTCGGGGAAGCCTTCCCGGA
CGCCCTCTTCCACCTTGGGGGCGACGAAACCATTCCCGTCGGGAAGTGCT
CCTTTGGGGTCATTCACGAGTTCGAGCGCAGCCTGCAGGCCGCCGTGCAA
GACATGAAGCGCCAGCCGGCGGTGTGGAACGAGGTGTTCAGCAACCCACC
GGCCAGCATTCCCAACGGCGCTGCGAGGTGGGTTGGTGGGGAGGGTTGGT
GGTTTAACTGCAACAAGCTCACACACACACAGTGGCACCATTCCTTCCCG
GACGCCCTCTTCCACCTTGGGGGCGACGAAACCATTCCCGTCGGGAAGTG
CTCCTTTGGGGTCATTCACGAGTTCGAGCGCAGCCTGCAGGCCGCCGTGC
AAGACATGAAGCGCCAGCCGGCGGTGTGGAACGAGGTGTTCAGCAACCCA
CCGGCCAGCATTCCCAACGGCGCTGCGAGGTGGGTTGGTGGGGAGGGTTG
GTGGTTTAACTGCAACAAGCTCACACACACACAGTGGCACCATTGCAACC
GCTTCAAGCAGTGCTTTTACTTTGACATTGCGACGGGCGTCGCCGCCTCT
GACCTGCACCTCATGACGGGTGGCGAAACCGCCATGTGGACAGACATGTA
CTGCGGCGCGCCGCACTGCCCGCAGCAGGGCCCGTGGGCGCAGTGGTACA
CTGCCGCTTACGACAAGGAGTTCAGCAAGTCCTTTGCGTCCCTGACGTTC
CCCCGGGCGGCGGCCGCCGCTGGCAGCTTCTGGCACTTTGACGCCACCCT
GGCGACGGACAGCCCGCAGTACTTGGCGCTCATTGACAACCACAACCGGC
GGTGGGTGTTAGGCAACCGCTTCAAGCAGTGCTTTTACTTTGACATTGCG
ACGGGCGTCGCCGCCTCTGACCTGCACCTCATGACGGGTGGCGAAACCGC
CATGTGGACAGACATGTACTGCGGCGCGCCGCACTGCCCGCAGCAGGGCC
CGTGGGCGCAGTGGTACACTGCCGCTTACGACAAGGAGTTCAGCAAGTCC
TTTGCGTCCCTGACGTTCCCCCGGGCGGCGGCCGCCGCTGGCAGCTTCTG
GCACTTTGACGCCACCCTGGCGACGGACAGCCCGCAGTACTTGGCGCTCA
TTGACAACCACAACCGGCGGTGGGTGTTAGCACGGGGCTCCACCACCTGC
CCCGTCAACTGCGCCTGTGACTGGAACTCCAAGTGCGGCAAGCCGTACCA
CGGGGCTCCACCACCTGCCCCGTCAACTGCGCCTGTGACTGGAACTCCAA
GTGCGGCAAGCCGTAC
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