mRNA_S-firma_F_contig10730.989.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10730.989.1
Unique NamemRNA_S-firma_F_contig10730.989.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Match: A0A2K1JR96_PHYPA (E3 ubiquitin protein ligase n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JR96_PHYPA)

HSP 1 Score: 80.1 bits (196), Expect = 2.150e-13
Identity = 71/262 (27.10%), Postives = 120/262 (45.80%), Query Frame = 1 
Query:    4 VASVSVGFEGMQSQNTRLLKQLSESNDRVRDLQLESQRLQDLLATVQQEKNALQAALDKKGQALDALNARATFLEQQLRRCREEVRR--GGGSQEGVVL------TGHVKKDL---EVNIAEQDGLIKARSKAMEEVEQAADVAQKRCLVLVKEKDDADAKAQALQDTVDALNRKLKKALESKGATSGVALPKAKGRKRSAADELTESYVKFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAFSVDQV 756
            + ++   +E MQ+QN+RL+ Q++E +D    L  ES + + L A++Q EK  L + +       +    R + LE Q R   E++ +    G Q  + +      T   +K+L   + ++   +  I+ R   + E +Q  D          KE+     + + +QD ++ALN KL          S +     +G       E  + Y    KC VC    +D VITKCFH  C  C+ + ++ R+R+CP CG+AF    V
Sbjct:  649 IETIGQAYEEMQTQNSRLIHQITERDDYNTQLVAESLKAKQLQASLQSEKQILASRVQHANATAEHHKQRVSRLEDQARSYIEQIGKVMDNGRQHTLSMETLRRKTAETEKELLSVKTSLEATNKRIEDRGHKLAEAQQQLD----------KER----FEKRRVQDELEALNNKL----------SRLRSHHERGPAIERLQEDIKEYKAILKCSVCHDRAKDVVITKCFHLFCGPCIQRNLEIRHRKCPACGIAFGQSDV 886
[Close]
BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Match: A9V7U4_MONBE (E3 ubiquitin protein ligase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V7U4_MONBE)

HSP 1 Score: 77.4 bits (189), Expect = 1.850e-12
Identity = 69/255 (27.06%), Postives = 122/255 (47.84%), Query Frame = 1 
Query:    4 VASVSVGFEGMQSQNT-RLLKQLSESNDRVRDLQLESQRLQDLLATVQQEKNALQAALDKKGQALDALNARATFLEQQLRRCREEVRRG--------GGSQEGVVLTGHVKKDLEVNIAEQDGLIKARSKAMEEVEQAADVAQKRCLVLVKEKDDADAKAQALQDTVDALNRKLKKALESKGATSGVALPKAKGRKRSAADELTESYVKFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAF 741
            V S    F+ +Q++   R L+QL E  D  R      QR+Q++L   Q+ K  L+  L+ K + ++A N R + LE +L R  E  R+            ++       V  DL+++  E + + KA+S+  + ++ +   AQ           +A+ +   L++ + +  R+ ++++ + G    V             DE+ +   K  KC  C ++ +D V+TKCFH  C  CV+QRI++R R+CP CG  F
Sbjct:  883 VESTGEAFDAVQAKYLERALQQLKEKEDSER------QRMQEVLQASQRNKT-LKEQLEPKQKLIEASNERLSKLEVELTRVSEAERQARHLWHTSSASERQLQQQVDRVSADLKMSQDELESVRKAQSQLQQNLKDSVQQAQ-----------EAEHQCTRLKEELGSYKRRYERSMSAGGGADAVL-----------EDEIRDLQAKL-KCTACNNNEKDTVLTKCFHVFCQACVEQRIQTRQRKCPQCGEKF 1107
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BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Match: W4K424_HETIT (E3 ubiquitin protein ligase n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4K424_HETIT)

HSP 1 Score: 73.9 bits (180), Expect = 2.230e-11
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:  529 SGVALPKAKGRKRSAADELTESYVKFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAFSVDQV 756
            S  A P    +K +A  +  E+ +K  KC +C S +RD VITKC HS C +CVD RI +R R+CP C L F+  +V
Sbjct:  464 SSKAKPLTVSQKEAALTKEVENCMKILKCSICHSHMRDTVITKCMHSFCKSCVDDRISTRQRKCPACNLQFAQSEV 539
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BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Match: UPI000C1D7283 (E3 ubiquitin-protein ligase BRE1-like 1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D7283)

HSP 1 Score: 73.6 bits (179), Expect = 3.240e-11
Identity = 68/257 (26.46%), Postives = 133/257 (51.75%), Query Frame = 1 
Query:    4 VASVSVGFEGMQSQNTRLLKQLSESNDRVRDLQLESQRLQDLLATVQQEKNALQAALDKKGQALDALNARATFLEQQLRRCREEVRRGGGSQEGVVLTGH--VKKDLEVNIAEQDGLIKARSKAMEEVEQA-ADVAQKRCLVLVKEKDDADAKAQALQDTVDALNRKLKKALESKGATSGVALPKAKGRKRSAADELTES---YVKFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAFSVDQV 756
            + ++   ++ MQ+QN +LL+++SE +D    L  E  + + +   +  EK +L+ A+ +   ++D  + +A  +E QL+ C ++++R    +   + T     K+ L+V  + Q  LI    +A ++V+    D+A+ + + L KE+     + + +++ ++ L RK   A + K    G           S A++L +    Y +  KC VC    ++ VITKCFH  C+ CV   +++R+R+CPVC  +F  + V
Sbjct:  412 IETIGQAYDDMQTQNQKLLQEISERDDYNMKLVSEGVQSRQMGDDLLMEKRSLERAIQQTKTSVDFYDTKAPRIEDQLKVCLDQIQRLKEDRVQKIATSENTQKRWLDVRKSLQQ-LIDTLEEAQDKVDMGRVDLAEMQ-IFLEKER----FERKRVEEDLETLKRK---AEQLKSLADG----------SSEAEKLKQELGEYKEILKCSVCLDKRKEVVITKCFHLFCNPCVKGILETRHRKCPVCSASFGPNDV 649
[Close]
BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Match: UPI000C1CF02B (E3 ubiquitin-protein ligase BRE1-like 1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CF02B)

HSP 1 Score: 73.6 bits (179), Expect = 3.540e-11
Identity = 68/257 (26.46%), Postives = 133/257 (51.75%), Query Frame = 1 
Query:    4 VASVSVGFEGMQSQNTRLLKQLSESNDRVRDLQLESQRLQDLLATVQQEKNALQAALDKKGQALDALNARATFLEQQLRRCREEVRRGGGSQEGVVLTGH--VKKDLEVNIAEQDGLIKARSKAMEEVEQA-ADVAQKRCLVLVKEKDDADAKAQALQDTVDALNRKLKKALESKGATSGVALPKAKGRKRSAADELTES---YVKFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAFSVDQV 756
            + ++   ++ MQ+QN +LL+++SE +D    L  E  + + +   +  EK +L+ A+ +   ++D  + +A  +E QL+ C ++++R    +   + T     K+ L+V  + Q  LI    +A ++V+    D+A+ + + L KE+     + + +++ ++ L RK   A + K    G           S A++L +    Y +  KC VC    ++ VITKCFH  C+ CV   +++R+R+CPVC  +F  + V
Sbjct:  636 IETIGQAYDDMQTQNQKLLQEISERDDYNMKLVSEGVQSRQMGDDLLMEKRSLERAIQQTKTSVDFYDTKAPRIEDQLKVCLDQIQRLKEDRVQKIATSENTQKRWLDVRKSLQQ-LIDTLEEAQDKVDMGRVDLAEMQ-IFLEKER----FERKRVEEDLETLKRK---AEQLKSLADG----------SSEAEKLKQELGEYKEILKCSVCLDKRKEVVITKCFHLFCNPCVKGILETRHRKCPVCSASFGPNDV 873
[Close]
BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Match: A0A0H5QQ05_9EUKA (E3 ubiquitin protein ligase n=5 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QQ05_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 2.690e-10
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  589 ESYVKFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAFSVDQVH 759
            E + +  KC VC+ + +  VITKCFH  C +C+D RIK+R+RRCP C   F  D VH
Sbjct:  633 EQFKRIVKCSVCKDTFKSVVITKCFHVFCRSCIDTRIKNRDRRCPACSKPFGQDDVH 689
[Close]
BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Match: A0A5M6C2E0_9TREE (E3 ubiquitin protein ligase n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6C2E0_9TREE)

HSP 1 Score: 70.9 bits (172), Expect = 2.840e-10
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:  442 ADAKAQA-LQDTVDALNRKLKKALESKGATSGVALPKAKGRKRSAADELTESYVKFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAFSVDQV 756
            A+ +A+A LQD  +A  R +KK  E + A + V+       +    +E  +  +K  +C  CE + + +VI KC H+ C +C++QRI SR R+CP CGL+F+ + V
Sbjct:  722 AEKEARAKLQDEAEASTRTIKKLKERQEAMAAVSSTNMSAGEWQMKEER-DKLLKLLRCSCCEQNFKQQVIVKCMHTFCKSCLEQRIASRQRKCPACGLSFAKEDV 826
[Close]
BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Match: A0A0H2R321_9AGAM (E3 ubiquitin protein ligase n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2R321_9AGAM)

HSP 1 Score: 68.6 bits (166), Expect = 1.690e-9
Identity = 35/98 (35.71%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:  463 LQDTVDALNRKLKKALESKGATSGVALPKAKGRKRSAADELTESYVKFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAFSVDQV 756
            L++ +  + R+L+KA  S      V    +   +  A  +    Y    KC  C +  R RVITKC H+ C +CVD RI+ R+R+CP C LAF+   V
Sbjct:  721 LKEKLSKVGRELEKAKSSANVKRPVG---SASEREEALQKENSKYADILKCSTCRNEFRSRVITKCMHTFCKSCVDARIQHRSRKCPACNLAFAQGDV 815
[Close]
BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Match: BRE1_CRYNJ (E3 ubiquitin-protein ligase BRE1 n=11 Tax=Cryptococcus TaxID=5206 RepID=BRE1_CRYNJ)

HSP 1 Score: 68.2 bits (165), Expect = 2.280e-9
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:  442 ADAKAQA-LQDTVDALNRKLKKALESKGATSGVALPKAKGRKRSAADELTESYVKFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAFSVDQV 756
            A+ +A+A LQD  D   + +KK  E + A +  +       + +   E  +  +K  KC  CE + + +VI KC H+ C  C++QRI SR R+CP CGLAF+ + +
Sbjct:  710 AEKEARAKLQDEADGQMKIIKKLKERQDAVAAASQTGMSDHEWAITQER-DKLLKLLKCSCCEQNFKQQVIVKCMHTFCKQCLEQRIASRQRKCPACGLAFAKEDI 814
[Close]
BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Match: A0A2R6X5I7_MARPO (E3 ubiquitin protein ligase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X5I7_MARPO)

HSP 1 Score: 68.2 bits (165), Expect = 2.320e-9
Identity = 60/251 (23.90%), Postives = 110/251 (43.82%), Query Frame = 1 
Query:    4 VASVSVGFEGMQSQNTRLLKQLSESNDRVRDLQLESQRLQDLLATVQQEKNALQAALDKKGQALDALNARATFLEQQLRRCREEVRRGGGSQEGVVLTGHVKKDLEVNIAEQDGLIKARSKAMEEVEQAADVAQKRCLVLVKEKDDADAKAQALQDTVDALNRKLKKALESKGATSGVALPKAKGRKRSAADELTESYVKFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAFSVDQV 756
            + ++   +E MQ+QN RLL+QL+E +D    L  E  + +  LA +Q E+  L   +++   + D    R    E+Q    R  +                 ++ +   AE +  + +   A+E  ++  +    + + +  E +    + + LQ+ VD LN K+ +          +             +EL E Y    KC VC    ++ VITKC+H  C  C+ + ++ R+R+CP CG+ F  + V
Sbjct:  641 IETIGQAYEDMQTQNQRLLQQLTERDDYNVQLVAEGLKTKQALANLQSERILLMRRIEQNHVSADTQKQRLARQEEQ---ARSYLXXXXXXXXXXXXXXXXLENAKRKTAEVEREMTSTKAALEAAQKTVEERGHKIVEVQGELEKERFEKRRLQEEVDGLNTKVARLASHHDGNPLI---------ERLQEELKE-YRAILKCSVCHDRAKEVVITKCYHLFCGPCIQRNLELRHRKCPGCGVPFGQNDV 878
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10730.989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K1JR96_PHYPA2.150e-1327.10E3 ubiquitin protein ligase n=2 Tax=Physcomitrium ... [more]
A9V7U4_MONBE1.850e-1227.06E3 ubiquitin protein ligase n=1 Tax=Monosiga brevi... [more]
W4K424_HETIT2.230e-1144.74E3 ubiquitin protein ligase n=1 Tax=Heterobasidion... [more]
UPI000C1D72833.240e-1126.46E3 ubiquitin-protein ligase BRE1-like 1 n=1 Tax=Ol... [more]
UPI000C1CF02B3.540e-1126.46E3 ubiquitin-protein ligase BRE1-like 1 n=1 Tax=Ol... [more]
A0A0H5QQ05_9EUKA2.690e-1049.12E3 ubiquitin protein ligase n=5 Tax=Spongospora su... [more]
A0A5M6C2E0_9TREE2.840e-1035.85E3 ubiquitin protein ligase n=1 Tax=Kwoniella shan... [more]
A0A0H2R321_9AGAM1.690e-935.71E3 ubiquitin protein ligase n=1 Tax=Schizopora par... [more]
BRE1_CRYNJ2.280e-934.91E3 ubiquitin-protein ligase BRE1 n=11 Tax=Cryptoco... [more]
A0A2R6X5I7_MARPO2.320e-923.90E3 ubiquitin protein ligase n=2 Tax=Marchantia pol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10730contigS-firma_F_contig10730:247..1135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog192875.XP_004343252.1
Preferred nameRNF20
PFAMsBRE1,zf-C3HC4,zf-C3HC4_2,zf-C3HC4_3
Max annot lvl33154|Opisthokonta
KEGG koko:K10696
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000149,GO:0000151,GO:0000209,GO:0000228,GO:0000278,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0002039,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003712,GO:0003713,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006629,GO:0006643,GO:0006664,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007346,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009607,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010948,GO:0016020,GO:0016043,GO:0016070,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0017075,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019898,GO:0019899,GO:0019905,GO:0019941,GO:0022402,GO:0022414,GO:0022607,GO:0030162,GO:0030163,GO:0030174,GO:0030334,GO:0030336,GO:0030424,GO:0030447,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031371,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031440,GO:0031441,GO:0031497,GO:0031570,GO:0031571,GO:0031573,GO:0031618,GO:0031624,GO:0031625,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032270,GO:0032446,GO:0032774,GO:0032879,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033184,GO:0033267,GO:0033503,GO:0033523,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0036170,GO:0036180,GO:0036211,GO:0040007,GO:0040012,GO:0040013,GO:0040029,GO:0042138,GO:0042176,GO:0042221,GO:0042393,GO:0042592,GO:0042594,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043434,GO:0043565,GO:0043632,GO:0043679,GO:0043933,GO:0044085,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044306,GO:0044389,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044456,GO:0044463,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0044877,GO:0045202,GO:0045732,GO:0045786,GO:0045814,GO:0045862,GO:0045892,GO:0045893,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0046872,GO:0046914,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051271,GO:0051276,GO:0051321,GO:0051569,GO:0051603,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061136,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070534,GO:0070647,GO:0071103,GO:0071496,GO:0071704,GO:0071824,GO:0071840,GO:0071894,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0097458,GO:0097659,GO:0098687,GO:0098793,GO:0120025,GO:0120038,GO:0140096,GO:0140110,GO:0150034,GO:1900363,GO:1900364,GO:1901135,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901800,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1902806,GO:1902807,GO:1902914,GO:1902916,GO:1903046,GO:1903047,GO:1903050,GO:1903052,GO:1903311,GO:1903312,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1903508,GO:1903509,GO:1905269,GO:1990234,GO:1990837,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000145,GO:2000146,GO:2001141,GO:2001166,GO:2001168,GO:2001252
Evalue2.71e-15
EggNOG OGsKOG0978@1|root,KOG0978@2759|Eukaryota,38CIM@33154|Opisthokonta
EC2.3.2.27
Descriptionhistone monoubiquitination
COG categoryO
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size771
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10730.989.1prot_S-firma_F_contig10730.989.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10730 247..1135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.5570312-CDS-S-firma_F_contig10730:246..3901622815614.5570312-CDS-S-firma_F_contig10730:246..390Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10730 247..390 -
1696949455.065886-CDS-S-firma_F_contig10730:246..3901696949455.065886-CDS-S-firma_F_contig10730:246..390Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10730 247..390 -
1622815614.569889-CDS-S-firma_F_contig10730:455..7791622815614.569889-CDS-S-firma_F_contig10730:455..779Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10730 456..779 -
1696949455.0782318-CDS-S-firma_F_contig10730:455..7791696949455.0782318-CDS-S-firma_F_contig10730:455..779Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10730 456..779 -
1622815614.5796127-CDS-S-firma_F_contig10730:832..11351622815614.5796127-CDS-S-firma_F_contig10730:832..1135Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10730 833..1135 -
1696949455.0865605-CDS-S-firma_F_contig10730:832..11351696949455.0865605-CDS-S-firma_F_contig10730:832..1135Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10730 833..1135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10730.989.1

>prot_S-firma_F_contig10730.989.1 ID=prot_S-firma_F_contig10730.989.1|Name=mRNA_S-firma_F_contig10730.989.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=257bp
MVASVSVGFEGMQSQNTRLLKQLSESNDRVRDLQLESQRLQDLLATVQQE
KNALQAALDKKGQALDALNARATFLEQQLRRCREEVRRGGGSQEGVVLTG
HVKKDLEVNIAEQDGLIKARSKAMEEVEQAADVAQKRCLVLVKEKDDADA
KAQALQDTVDALNRKLKKALESKGATSGVALPKAKGRKRSAADELTESYV
KFAKCPVCESSIRDRVITKCFHSLCHTCVDQRIKSRNRRCPVCGLAFSVD
QVHAFM*
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mRNA from alignment at S-firma_F_contig10730:247..1135-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10730.989.1 ID=mRNA_S-firma_F_contig10730.989.1|Name=mRNA_S-firma_F_contig10730.989.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=889bp|location=Sequence derived from alignment at S-firma_F_contig10730:247..1135- (Sphaerotrichia firma ET2_F female)
ATGGTGGCCAGCGTGTCCGTCGGGTTTGAGGGCATGCAGTCCCAAAACAC
CCGCCTGTTGAAGCAGCTCAGCGAGAGCAACGACCGCGTGCGGGACCTGC
AGCTAGAGTCCCAGCGCCTGCAGGACCTGTTGGCCACGGTGCAGCAGGAA
AAGAACGCCCTGCAGGCGGCCCTGGACAAGAAGGGGCAGGCCCTGGACGC
CCTCAACGCGCGTGCGACGTTTTTGGAGCAGCAGCTGCGGCGATGCAGGG
AGGAGGTGAGGCGGGGCGGCGGGAGTCAGGAAGGAGTTGTGCTCACGGGC
CATGTTTTGCGTTGCAGCTGGACTCTGGTGCGGACATGGCGGCCAACCTG
CGCCAGGTGAAGAAGGACTTAGAGGTGAACATTGCGGAGCAGGATGGCCT
CATCAAGGCCCGCAGCAAGGCGATGGAGGAAGTGGAGCAGGCGGCGGATG
TGGCGCAGAAGCGGTGCCTGGTGCTGGTGAAGGAGAAGGACGACGCCGAC
GCCAAGGCGCAGGCCCTGCAGGACACGGTGGACGCCCTGAACCGCAAGCT
GAAAAAGGCCTTGGAGTCCAAGGGCGCCACGTCGGGGGTTGCGCTCCCCA
AGGCCAAGGGGAGAAAACGCAGCGCCGCCGACGAGCTCACCGAGTCGTAC
GTCAAGTTTGCAAAGTGCCCCGTGTGCGAGGTGTGTCGGGGGTGGTTTTG
TTGGGTGTGGGTGTGGGTGTGGATGTGTTTCACCACCACCTACAGTCCTC
CATTCGGGACCGCGTCATCACGAAGTGCTTCCACTCCCTGTGCCACACGT
GCGTAGACCAGCGCATCAAGAGCCGCAACCGGCGTTGCCCGGTGTGTGGC
CTGGCGTTTTCGGTGGATCAGGTCCACGCTTTCATGTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10730:247..1135-

>mRNA_S-firma_F_contig10730.989.1 ID=mRNA_S-firma_F_contig10730.989.1|Name=mRNA_S-firma_F_contig10730.989.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1542bp|location=Sequence derived from alignment at S-firma_F_contig10730:247..1135- (Sphaerotrichia firma ET2_F female)
ATGGTGGCCAGCGTGTCCGTCGGGTTTGAGGGCATGCAGTCCCAAAACAC
CCGCCTGTTGAAGCAGCTCAGCGAGAGCAACGACCGCGTGCGGGACCTGC
AGCTAGAGTCCCAGCGCCTGCAGGACCTGTTGGCCACGGTGCAGCAGGAA
AAGAACGCCCTGCAGGCGGCCCTGGACAAGAAGGGGCAGGCCCTGGACGC
CCTCAACGCGCGTGCGACGTTTTTGGAGCAGCAGCTGCGGCGATGCAGGG
AGGAGGTGAGGCGGGGCGGCGGGAGTCAGGAAGGAGTTGTGCTCACGGGC
CATATGGTGGCCAGCGTGTCCGTCGGGTTTGAGGGCATGCAGTCCCAAAA
CACCCGCCTGTTGAAGCAGCTCAGCGAGAGCAACGACCGCGTGCGGGACC
TGCAGCTAGAGTCCCAGCGCCTGCAGGACCTGTTGGCCACGGTGCAGCAG
GAAAAGAACGCCCTGCAGGCGGCCCTGGACAAGAAGGGGCAGGCCCTGGA
CGCCCTCAACGCGCGTGCGACGTTTTTGGAGCAGCAGCTGCGGCGATGCA
GGGAGGAGGTGAGGCGGGGCGGCGGGAGTCAGGAAGGAGTTGTGCTCACG
GGCCATGTGAAGAAGGACTTAGAGGTGAACATTGCGGAGCAGGATGGCCT
CATCAAGGCCCGCAGCAAGGCGATGGAGGAAGTGGAGCAGGCGGCGGATG
TGGCGCAGAAGCGGTGCCTGGTGCTGGTGAAGGAGAAGGACGACGCCGAC
GCCAAGGCGCAGGCCCTGCAGGACACGGTGGACGCCCTGAACCGCAAGCT
GAAAAAGGCCTTGGAGTCCAAGGGCGCCACGTCGGGGGTTGCGCTCCCCA
AGGCCAAGGGGAGAAAACGCAGCGCCGCCGACGAGCTCACCGAGTCGTAC
GTCAAGTTTGCAAAGTGCCCCGTGTGCGAGGTGAAGAAGGACTTAGAGGT
GAACATTGCGGAGCAGGATGGCCTCATCAAGGCCCGCAGCAAGGCGATGG
AGGAAGTGGAGCAGGCGGCGGATGTGGCGCAGAAGCGGTGCCTGGTGCTG
GTGAAGGAGAAGGACGACGCCGACGCCAAGGCGCAGGCCCTGCAGGACAC
GGTGGACGCCCTGAACCGCAAGCTGAAAAAGGCCTTGGAGTCCAAGGGCG
CCACGTCGGGGGTTGCGCTCCCCAAGGCCAAGGGGAGAAAACGCAGCGCC
GCCGACGAGCTCACCGAGTCGTACGTCAAGTTTGCAAAGTGCCCCGTGTG
CGAGTCCTCCATTCGGGACCGCGTCATCACGAAGTGCTTCCACTCCCTGT
GCCACACGTGCGTAGACCAGCGCATCAAGAGCCGCAACCGGCGTTGCCCG
GTGTGTGGCCTGGCGTTTTCGGTGGATCAGGTCCACGCTTTCATGTGATC
CTCCATTCGGGACCGCGTCATCACGAAGTGCTTCCACTCCCTGTGCCACA
CGTGCGTAGACCAGCGCATCAAGAGCCGCAACCGGCGTTGCCCGGTGTGT
GGCCTGGCGTTTTCGGTGGATCAGGTCCACGCTTTCATGTGA
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