mRNA_S-firma_F_contig1073.986.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 168 bits (425), Expect = 1.430e-44 Identity = 88/150 (58.67%), Postives = 102/150 (68.00%), Query Frame = 3
Query: 6 GQTRHLDAFIVALGQACDGGKKRWYGPTLELQLVSLGFCRACRSIPALVVRVDDRTPRSLWVPSQSMTGPNTGSSKKARISSRVPVVQALRLTWALPLEVLVQGAAVDLWRWSEYLRLKGFMSASSLESVSWPTALKELVLDTALKVPVE 455
G TR DAF +AL QAC+GG+KRWY T ELQL SL CRACRS P L VRV TP SLW P PNT SSK R+ SRVPVV+ALRLTWA +E LVQ AA++LW SE L + G + A+SL SV WP L +LVLDT +P+E
Sbjct: 5 GYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSK-VRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGLTQLVLDTDFHIPME 153
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 163 bits (413), Expect = 1.610e-38 Identity = 86/143 (60.14%), Postives = 101/143 (70.63%), Query Frame = 3
Query: 9 QTRHLDAFIVALGQACDGGKKRWYGPTLELQLVSLGFCRACRSIPALVVRVDDRTPRSLWVPSQSMTGPNTGSSKKARISSRVPVVQALRLTWALPLEVLVQGAAVDLWRWSEYLRLKGFMSASSLES-VSWPTALKELVLDT 434
+TR LDAF++AL QAC+GG+KRWY TLELQL SL CRACR+ L V VDD+TPRSLW + T PNT S ISSRVPVV+ALRLTWAL +E L++ AA++LW WSE L L G SSL S V WP L +LVL T
Sbjct: 8 RTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNT-RSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYT 149
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE) HSP 1 Score: 148 bits (373), Expect = 6.520e-34 Identity = 83/176 (47.16%), Postives = 102/176 (57.95%), Query Frame = 3
Query: 6 GQTRHLDAFIVALGQACDGGKKRWYGPTLELQLVSLGFCRACRSIPALVVRVDDRTPRSLWVPSQSMTGPNTGSSK---------------------------KARISSRVPVVQALRLTWALPLEVLVQGAAVDLWRWSEYLRLKGFMSASSLESVSWPTALKELVLDTALKVPV 452
G +R DA I+A+ QA +G KRWY TLEL+L SL CRACR +P + VRVD TP SLW P T +T SSK KARISSRVPV QAL LTWALP E+L+QG AV+LW E+L+L+ +S S L SV+WP LK L L+T + +
Sbjct: 5 GASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWTKLEFLQLRESLSPSDLVSVAWPQNLKRLALETGFEAAI 180
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 140 bits (352), Expect = 3.690e-32 Identity = 78/144 (54.17%), Postives = 98/144 (68.06%), Query Frame = 3
Query: 6 GQTRHLDAFIVALGQACDGGKKRWYGPTLELQLVSLGFCRACRSIPALVVRVDDRTPRSLWVPSQSMTGPNTGSSKKARISSRVPVVQALRLTWALPLEVLVQGAAVDLWRWSEYLRLKGFMSASSLESVSW-PTALKELVLDT 434
G++ L AFIVAL Q C+G +KRWY TLELQLVSL FC ACR +P L VRVD +TPRSLW P +S S++A +S+RVP VQA LTWAL +EVL+Q +AV+L S+Y R+ G S +SL S+ W LK LV D+
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKK-RSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDS 155
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 144 bits (363), Expect = 7.490e-32 Identity = 80/147 (54.42%), Postives = 96/147 (65.31%), Query Frame = 3
Query: 6 GQTRHLDAFIVALGQACDGGKKRWYGPTLELQLVSLGFCRACRSIPALVVRVDDRTPRSLWVPSQSMTGPNTGSSKKARISSRVPVVQALRLTWALPLEVLVQGAAVDLWRWSEYLRLKGFMSASSLESVSWPTALKELVLDTALKV 446
G ++ LDAF+VAL QACDG +KRWY TLELQLVSL C ACR + L VRV +TP SLW PSQ+ T N S K ISSRVPVVQA LTWALP+ VL Q +A ++ S R SA+SLES WP LK +V ++ + V
Sbjct: 5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVC-ISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTV 150
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 129 bits (323), Expect = 4.780e-28 Identity = 72/150 (48.00%), Postives = 93/150 (62.00%), Query Frame = 3
Query: 9 QTRHLDAFIVALGQACDGGKKRWYGPTLELQLVSLGFCRACRSIPALVVRVDDRTPRSLWVPSQSMTGPNTGSSKKARISSRVPVVQALRLTWALPLEVLVQGAAVDLWRWSEYLRLKGFMSASSLESVSWPTALKELVLD-TALKVPVE 455
Q R LDAF+VAL Q +GG+KRWY TL+LQL SL FC ACRS P L V VD TP +LW S P G+S +RVP VQA+ LTWA P E + A+ +LW E L+L+ + ++L+SV WP L+ LV+D T +P+E
Sbjct: 6 QRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLW--SLGQANPTAGTS------TRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLVMDCTVFIIPLE 147
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 118 bits (296), Expect = 3.180e-26 Identity = 70/135 (51.85%), Postives = 83/135 (61.48%), Query Frame = 3
Query: 21 LDAFIVALGQACDGGKKRWYGPTLELQLVSLGFCRACRSIPALVVRVDDRTPRSLWVPSQSMTGPNTGSSKKARISSRVPVVQALRLTWALPLEVLVQGAAVDLWRWSEYLRLKGFMSASSLESVSWPTALKELV 425
LD IVAL QACDG +KRWY TLELQLVSL C ACRS L V V + TP +LW S T P+ S + S+RVP VQAL TWALP++ L Q AA + +E G A+S+ESV WP +LK LV
Sbjct: 90 LDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCT-SNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLV 223
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.280e-23 Identity = 74/169 (43.79%), Postives = 93/169 (55.03%), Query Frame = 3
Query: 6 GQTRHLDAFIVALGQACDGGKKRWYGPTLELQLVSLGFCRACRSIPALVVRVDDRTPRSLWVPSQSMTGPNTGSSKKARISSRVPVVQALRLTWALPLEVLVQGAAVDLWRWSEYLRLKG--------------------FMSASSLESVSWPTALKELVLDTALKVPV 452
G++ LDAFIVAL QA DG KRWY TLELQLVSL FC ACRS + V++ +TP SLW P +S G S++A I SRVP VQA WALP+E+L+ +A +L + SE + G F S S+ SVSWP L+EL P+
Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSH-GTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQPI 192
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 1.680e-19 Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 3
Query: 9 QTRHLDAFIVALGQACDGGKKRWYGPTLELQLVSLGFCRACRSIPALVVRVDDRTPRSLWVPSQSMTGPNTGSSKKARI 245
+++ LDAF+VAL Q CDG +KRWY TLELQLVSL FC ACR +P L VRVD RTPRSLW P T P T + ++
Sbjct: 38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSP---RTTPITAHKRSRKV 113
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Match: A0A6H5JL88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL88_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 2.090e-18 Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 3
Query: 72 RWYGPTLELQLVSLGFCRACRSIPALVVRVDDRTPRSLWVPSQSMTGPNTGSSK----KARISSRVPVVQALRLTWALPLEVLVQGAAVDLWRWSEYLRLKGFMSASSLESVSWPTALKEL 422
RW+ TL +QL SL FCRA RSIP + + VD R PRSLW +S T +T + KAR SRVP+++A RL W L +E L+Q AV+LW + L L G +S +S S+ P L++L
Sbjct: 4 RWFTSTLNIQLASLEFCRASRSIPTIALHVDSRIPRSLWDGRKSQTPSSTRGLEIRCWKARPLSRVPLIRASRLNWGLSMETLLQSTAVELWTGLKSLHLCGDVSDASPASMVQPQRLEQL 124 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1073.986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1073.986.1 >prot_S-firma_F_contig1073.986.1 ID=prot_S-firma_F_contig1073.986.1|Name=mRNA_S-firma_F_contig1073.986.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=613bp MTGPNTGSSKKARISSRVPVVQALRLTWALPLEVLVQGAAVDLWRWSEYLback to top mRNA from alignment at S-firma_F_contig1073:759..3557+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1073.986.1 ID=mRNA_S-firma_F_contig1073.986.1|Name=mRNA_S-firma_F_contig1073.986.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2799bp|location=Sequence derived from alignment at S-firma_F_contig1073:759..3557+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1073:759..3557+ >mRNA_S-firma_F_contig1073.986.1 ID=mRNA_S-firma_F_contig1073.986.1|Name=mRNA_S-firma_F_contig1073.986.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3678bp|location=Sequence derived from alignment at S-firma_F_contig1073:759..3557+ (Sphaerotrichia firma ET2_F female)back to top |