mRNA_S-firma_F_contig10726.984.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10726.984.1 vs. uniprot
Match: D8LS71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS71_ECTSI) HSP 1 Score: 501 bits (1289), Expect = 2.570e-175 Identity = 248/299 (82.94%), Postives = 269/299 (89.97%), Query Frame = 3
Query: 84 GASTGPSRGGVR----MLGQLDPWVLAGVALYVGTAYVFWESFRAYFDWSESLAISFIDGLPRVSVLDLFGSVLTCQAYRATAKFPKHAVETLVACSLMQFAGGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSPWDMWHGRAMSNKAAVFVAAFGRAVSASHAITSWGADKALTAHFEKATVSAGCTILAGCLAGCGGGILADLLSLEGDNWNLQKTPRALASPSFSVQRCFGASTLYYILSDPHGYLSPDAPFPLSLLGRLSVDHGNGPCTEAAAMVAVYVTANHLLDFFIP 968
G P +G R M+G LDP V+AGVA+YV TAY FW FR YFDW+ESLAISF DGLPR+SVLDLFGS+LTCQAYR AKFPKHAVETLVACSLMQF GGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSPWD+WHGRAMSNKA +F+AAFGRAVSASHAITSWGADKALTAHFEKA +SA CTIL G LAGCGGGILADLL+L+GD+WNLQ+TP+ALASPSFSVQRCFGAS LYY+L+DPHGYLS +APFPLSLLGRLSVDHGNGP TEAAAMVAVYVTANHL+D+FIP
Sbjct: 16 GGGQKPKQGATRTVSTMMGSLDPLVVAGVAVYVATAYAFWGIFREYFDWTESLAISFKDGLPRLSVLDLFGSILTCQAYRGMAKFPKHAVETLVACSLMQF-GGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSPWDLWHGRAMSNKACMFLAAFGRAVSASHAITSWGADKALTAHFEKAKMSAICTILCGTLAGCGGGILADLLNLDGDSWNLQRTPQALASPSFSVQRCFGASCLYYLLADPHGYLSEEAPFPLSLLGRLSVDHGNGPSTEAAAMVAVYVTANHLMDYFIP 313
BLAST of mRNA_S-firma_F_contig10726.984.1 vs. uniprot
Match: A0A482SCI6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCI6_9ARCH) HSP 1 Score: 144 bits (363), Expect = 2.530e-36 Identity = 107/296 (36.15%), Postives = 155/296 (52.36%), Query Frame = 3
Query: 141 WVLAGVALYVGTAYVFWESFRAYFDW------SESLAISFIDGLPRVSVLDLFGSVLTCQAYRATAKFPKHAVETLVACSLMQFAGGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSPWDMWHGRAMSNKAAVFVAAFGRAVSASHAITSWGADKAL--TAHFEKATVSAG---CTILAGCLAGCGGGILADLLSLEGDNWNLQ--KTPRALA----SPSFSVQRCFGASTLYYILSDPHGYLSPDAPFPLSLLGRLSVDHGNGPCTEAAAMVAVYVTANHLLDFFIPHVG 977
+VL G AL + Y ++ FRA D+ S ++ + F+ LP +S+LD FGS C+ YR + K E LVAC+LMQF GGT + G L LGQTPSW+ S +A+PA+A+AWWLTF+ P D++ +N +FV AVS++HA++SWG DKAL H K +S CT L+G + GGGIL D+L N + +TP S ++ + + +YY L +PH +PL G VD G + ++++ + HL PHV
Sbjct: 27 YVLLGAALL--SFYFQFDDFRANVDYLNEYLESATVVVPFVPYLPPISILDFFGSACVCRTYRRNVEGRKSWFEVLVACTLMQF-GGTTITGFL-LGQTPSWIMSKSAFPAMALAWWLTFYCPGDVFWKAIKNNSILLFVLGMFGAVSSAHAVSSWGVDKALFNAFHVNKEGISKAYMVCT-LSGAFSASGGGILTDVLGFFRPNKSFVPFRTPSLFMIDFYEASATINKALLLAVVYYSLVNPH--------YPLPF-GLDHVDKVTGHSILSILNLSIFFQSTHL-----PHVN 303
BLAST of mRNA_S-firma_F_contig10726.984.1 vs. uniprot
Match: A0A7S0I0V3_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I0V3_9CRYP) HSP 1 Score: 108 bits (269), Expect = 1.000e-22 Identity = 78/241 (32.37%), Postives = 116/241 (48.13%), Query Frame = 3
Query: 159 ALYVGTAYVFWESFRAYFDWSESLAISFIDGLPRVSVLDLFGSVLTCQAYRATAKFPKHAVE----------------TLVACSLMQFAGGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSPWDMWHGRAMSNKAAVFVAAFGRAVSASHAITSWGADKALTAHFEKATVSAGCTILAGCLAGCGGGILADLLSLEGDNWNLQKTPRALASPSFSVQRCFGASTLYYILSDPHGYL 833
AL V Y + + +W ES I + VS LD GS + C A+R + + A + T+ C+ +QF GGT G +LGQ PSW+ + A +AWWLTF SP+D+WH + + + AF +S++HAITSWG +KAL A E+ S +L G +G G ++ G + ++PS+++QR + LYY L+DPHG L
Sbjct: 63 ALLVAVVYQNFHDAMIWMEWIESYKIFNAN----VSWLDFCGSCVVCHAFRVSLEKSIKAGDARIINMCKTAFGCYATTICTCTFLQF-GGTTTTGA-ILGQYPSWLAGTHVFSAFLLAWWLTFCSPFDIWHFWMKTPWLMIPIKAFAT-ISSAHAITSWGMEKALNAEHERMRKSVWAALLCGFTSGSFGWVVVSYFETGG-------SAIVASAPSWAMQRAWYLIWLYYALTDPHGVL 289
BLAST of mRNA_S-firma_F_contig10726.984.1 vs. uniprot
Match: A0A8J2SHU2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHU2_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.930e-22 Identity = 85/229 (37.12%), Postives = 117/229 (51.09%), Query Frame = 3
Query: 258 RVSVLDLFGSVLTCQAYRATAKFPKHAVE---TLVACSLMQFAGGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSPWDMWHGRAMSNKAAVFVAAFGRAVSASHAITSWGADKALTAHFEKATVSAGCTILAGCLAGCGGGILADLLSLEGDNWNLQKTPRALASPSFSVQRCFGASTLYYILSDPHGYLS--PDAPFPLSLL-GRLSVDHGNGPCTEAAAMVA 926
R S +D FGS + C A+RA + K L C LMQF GGT LVG+L LGQ SW S TA +L +A+WL+ P D+++ R +K + A G A+S HA+TSWGADKA++A K S T++AG GGG+ L L G+ ++ R+ A+ F AS YY++ +PHG P AP L+ G LS+ P + A
Sbjct: 77 RFSTMDFFGSTVCCCAFRARLEQNKQKTPWFLALACCCLMQF-GGTTLVGLL-LGQPASWTTSPTACRSLLLAFWLSVSCPLDLFY-RMYQHKIIKSMIAIGAALSTGHAVTSWGADKAISAIHPKPRSSVFSTLMAGAFGASGGGLSVHALDLWGERRRGKE--RSYAAFLFGAV----ASVSYYLMRNPHGVFEYEPLAPGRARLIIGALSLLSNAAPAVLGGHIAA 296
BLAST of mRNA_S-firma_F_contig10726.984.1 vs. uniprot
Match: A0A7S2DJ93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJ93_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.720e-20 Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 3
Query: 180 YVFWESFRAYFDWSESLAI-----SFIDGLPRVSVLDLFGSVLTCQAYRATAKFPKHAVETLVACSLMQFAGGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSP 491
Y++W+ + ++W S ++ SF PR+SV DLFGS L C YR + K K+ +ETLV C+L+QF G T L+LGQ+PSW+ S TA+P+L V WWL+FF P
Sbjct: 22 YLWWDPYVELYEWFGSASLPTCPESFWH-CPRLSVADLFGSCLVCYGYRTSLKTTKYWLETLVVCTLLQFGGTTCTA--LILGQSPSWLSSATAFPSLLVCWWLSFFCP 127
BLAST of mRNA_S-firma_F_contig10726.984.1 vs. uniprot
Match: A0A7S0W3X9_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W3X9_9CRYP) HSP 1 Score: 94.7 bits (234), Expect = 6.670e-18 Identity = 74/208 (35.58%), Postives = 97/208 (46.63%), Query Frame = 3
Query: 264 SVLDLFGSVLTCQAYRAT----------AKFPKHAVETLV------ACSLMQFAGGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSPWDMWHGRAMSNKAAVFVAAFGRAVSASHAITSWGADKALTAHFEKATVSAGCTILAGCLAGCGGGILADLLSLEGDNWNLQKTPRALASPSFSVQRCFGASTLYYILSDPHGYLSP 839
S+LD GS + C +YR A K++ V C QF GGT VL LGQ PSW A +AWWLTF SP D+W AM +A +SA+HA+TSWG +KAL+A + SA + G L+GC G L G+ PS+++QR F A YY L++PHG L+P
Sbjct: 120 SLLDFAGSAMVCFSYRTATERSIAEGDAAACRKNSSPLAVYAYGIFICLFSQF-GGTTSTAVL-LGQNPSWAAGNHVTNAFLLAWWLTFCSPGDVWF-EAMKLRAVRLPLQAVACISAAHAVTSWGLEKALSAEHTRMRGSAWGALACGYLSGCFGWPLVAFFETGGERLTR-------LGPSWAMQRTFYAVLAYYALTNPHGTLTP 317
BLAST of mRNA_S-firma_F_contig10726.984.1 vs. uniprot
Match: L1JY25_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JY25_GUITC) HSP 1 Score: 75.1 bits (183), Expect = 1.780e-11 Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = 3
Query: 453 ALAVAWWLTFFSPWDMWHGRAMSNKAAVFVAAFGRAVSASHAITSWGADKALTAHFEKATVSAGCTILAGCLAGCGGGILADLLSLEGDNWNLQKTPRALASPSFSVQRCFGASTLYYILSDPHGYL 833
A +AWWLTF SP+D+WH + + + AF +S++HAITSWG +KAL A E+ S +L G +G G ++ G + ++P++++QR + +YY L+DPHG L
Sbjct: 107 AFLLAWWLTFCSPFDIWHNSMKTPWLMIPIKAFAT-ISSAHAITSWGMEKALNAEHERMRKSVWAALLCGFTSGSFGWVVVSYFETGG-------SAIVASAPTWAMQRAWYLVWVYYGLTDPHGIL 225
BLAST of mRNA_S-firma_F_contig10726.984.1 vs. uniprot
Match: A0A7S0UDZ5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UDZ5_HEMAN) HSP 1 Score: 65.5 bits (158), Expect = 1.170e-8 Identity = 49/133 (36.84%), Postives = 61/133 (45.86%), Query Frame = 3
Query: 264 SVLDLFGSVLTCQAYR-ATAKFPK---------------HAVETLVACSLMQFAGGTFLVGVLVLGQTPSWMHSFTAWPALAVAWWLTFFSPWDMWHGRAMSNKAAVFVAAFGRAVSASHAITSWGADKALTA 614
S+LD GS + C +YR AT K H V + C QF G T + LGQ SW A +AWWLTF P D+W AM +A VSA+HA+TSWG +KAL+A
Sbjct: 92 SLLDFAGSAMVCFSYRTATQKAIADGDEALCRKHSSPLAHYVYGIFTCLFSQFGGTTSTA--IFLGQNASWTAGNHVTNAFLLAWWLTFCCPMDLWF-TAMQYRAMRLPVQAVACVSAAHAVTSWGLEKALSA 221 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10726.984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10726.984.1 >prot_S-firma_F_contig10726.984.1 ID=prot_S-firma_F_contig10726.984.1|Name=mRNA_S-firma_F_contig10726.984.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=381bp MDQGPVAGRAPSSDEALKQAQQQQEGDGASTGPSRGGVRMLGQLDPWVLAback to top mRNA from alignment at S-firma_F_contig10726:785..4472+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10726.984.1 ID=mRNA_S-firma_F_contig10726.984.1|Name=mRNA_S-firma_F_contig10726.984.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3688bp|location=Sequence derived from alignment at S-firma_F_contig10726:785..4472+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10726:785..4472+ >mRNA_S-firma_F_contig10726.984.1 ID=mRNA_S-firma_F_contig10726.984.1|Name=mRNA_S-firma_F_contig10726.984.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2286bp|location=Sequence derived from alignment at S-firma_F_contig10726:785..4472+ (Sphaerotrichia firma ET2_F female)back to top |