mRNA_S-firma_F_contig10718.970.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10718.970.1
Unique NamemRNA_S-firma_F_contig10718.970.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10718.970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10718contigS-firma_F_contig10718:1957..2863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.5022485-CDS-S-firma_F_contig10718:1956..21851622815612.5022485-CDS-S-firma_F_contig10718:1956..2185Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10718 1957..2185 +
1696949453.705214-CDS-S-firma_F_contig10718:1956..21851696949453.705214-CDS-S-firma_F_contig10718:1956..2185Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10718 1957..2185 +
1622815612.5138936-CDS-S-firma_F_contig10718:2772..28611622815612.5138936-CDS-S-firma_F_contig10718:2772..2861Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10718 2773..2861 +
1696949453.7147267-CDS-S-firma_F_contig10718:2772..28611696949453.7147267-CDS-S-firma_F_contig10718:2772..2861Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10718 2773..2861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10718.970.1prot_S-firma_F_contig10718.970.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10718 1957..2861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10718.970.1

>prot_S-firma_F_contig10718.970.1 ID=prot_S-firma_F_contig10718.970.1|Name=mRNA_S-firma_F_contig10718.970.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=106bp
RCGRGGSRADRRHGSRAPSADTTTTTTATTTAAAAAAAEAEADDVPRARG
AGLGGRCPHRRGRGERRRGRERCGGAAAAEAPEDFGLSRPAGDDRGGGLV
GRAGGR
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mRNA from alignment at S-firma_F_contig10718:1957..2863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10718.970.1 ID=mRNA_S-firma_F_contig10718.970.1|Name=mRNA_S-firma_F_contig10718.970.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=907bp|location=Sequence derived from alignment at S-firma_F_contig10718:1957..2863+ (Sphaerotrichia firma ET2_F female)
CGATGTGGCCGCGGCGGCTCGCGTGCTGATCGGAGGCATGGATCGCGAGC
GCCCTCAGCAGACACCACCACAACAACAACAGCAACAACAACGGCAGCAG
CAGCTGCTGCTGCAGAAGCAGAAGCCGACGATGTGCCGCGAGCACGCGGA
GCCGGGCTGGGTGGACGTTGTCCGCATCGGCGGGGACGAGGGGAGCGGCG
ACGCGGACGGGAGCGCTGCGGCGGGGCAGGTGGGGGCTCCGTGTTTGATT
GTTGGGGTGGGGTCCGGCGGCGTCGGTGTTCGGCTCTTTCGTAGGCTACC
GGTGCAGCTTTTGTTGCTTGATTTTGGCGAGCCAAAGAGAGCTGAAGATC
CGATTGGATCGCGTGCTTCTTGCGAGCACTCTCACGCGTTCGTTTTGTTC
CCCAAGTTTTGTCTGAGTTCAACCCGCGCGTGCACACACCGGCCGTGTTT
GCTGGGTTGCCCCGTGGTCCCACTAAGAGGGAGAGCAGCACAACCCCCCC
CCCCCCCCCCCCCCCAAAAACACAAAACAAAAATGACACGAGTAGCAACA
CAGCAGCAACGTGTGAGACCCCGGGTGGGTCGTCTAGCTAGCTAGTCGTG
GTGGAGGATGGGGGCCAGTGGGGCAGTCGACAGAAACACTAATGGGAGGA
GAAAAAAAAAAGAAAAAAAAAAGTTGCAGCGAGGCTCTCCCGCTCCCGCT
TCTCCACACCGCCCTCCAAGACATCCAAACCTCGTCCCTACCCCCTGCTT
ATCATTGCTCGTGCGGGCCGTGCCCGCGGCGACAACCCGACTTCCACGCG
CCTTAACTCAACTCAGCGGCGGCCGAAGCGCCGGAGGACTTCGGCCTTTC
CCGCCCCGCCGGGGATGATCGGGGGGGAGGGCTGGTGGGCCGGGCAGGAG
GACGGCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10718:1957..2863+

>mRNA_S-firma_F_contig10718.970.1 ID=mRNA_S-firma_F_contig10718.970.1|Name=mRNA_S-firma_F_contig10718.970.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=636bp|location=Sequence derived from alignment at S-firma_F_contig10718:1957..2863+ (Sphaerotrichia firma ET2_F female)
CGATGTGGCCGCGGCGGCTCGCGTGCTGATCGGAGGCATGGATCGCGAGC
GCCCTCAGCAGACACCACCACAACAACAACAGCAACAACAACGGCAGCAG
CAGCTGCTGCTGCAGAAGCAGAAGCCGACGATGTGCCGCGAGCACGCGGA
GCCGGGCTGGGTGGACGTTGTCCGCATCGGCGGGGACGAGGGGAGCGGCG
ACGCGGACGGGAGCGCTGCGGCGGGGCAGCGATGTGGCCGCGGCGGCTCG
CGTGCTGATCGGAGGCATGGATCGCGAGCGCCCTCAGCAGACACCACCAC
AACAACAACAGCAACAACAACGGCAGCAGCAGCTGCTGCTGCAGAAGCAG
AAGCCGACGATGTGCCGCGAGCACGCGGAGCCGGGCTGGGTGGACGTTGT
CCGCATCGGCGGGGACGAGGGGAGCGGCGACGCGGACGGGAGCGCTGCGG
CGGGGCAGCGGCGGCCGAAGCGCCGGAGGACTTCGGCCTTTCCCGCCCCG
CCGGGGATGATCGGGGGGGAGGGCTGGTGGGCCGGGCAGGAGGACGGCGG
CGGCCGAAGCGCCGGAGGACTTCGGCCTTTCCCGCCCCGCCGGGGATGAT
CGGGGGGGAGGGCTGGTGGGCCGGGCAGGAGGACGG
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