mRNA_S-firma_F_contig10718.969.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10718.969.1
Unique NamemRNA_S-firma_F_contig10718.969.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10718.969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10718contigS-firma_F_contig10718:15..1587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAT hook and RING/FYVE/PHD-type zinc finger protein
Ec32 orthologEc-25_000880.1
Exons2
Model size714
Cds size711
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.4504244-CDS-S-firma_F_contig10718:14..1551622815612.4504244-CDS-S-firma_F_contig10718:14..155Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10718 15..155 +
1696949453.686344-CDS-S-firma_F_contig10718:14..1551696949453.686344-CDS-S-firma_F_contig10718:14..155Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10718 15..155 +
1622815612.4642818-CDS-S-firma_F_contig10718:1015..15851622815612.4642818-CDS-S-firma_F_contig10718:1015..1585Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10718 1016..1585 +
1696949453.6952085-CDS-S-firma_F_contig10718:1015..15851696949453.6952085-CDS-S-firma_F_contig10718:1015..1585Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10718 1016..1585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10718.969.1prot_S-firma_F_contig10718.969.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10718 15..1585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10718.969.1

>prot_S-firma_F_contig10718.969.1 ID=prot_S-firma_F_contig10718.969.1|Name=mRNA_S-firma_F_contig10718.969.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=237bp
SCEYERCSKSPSFGFPGRKGGQFCEKHQEEGMVNLHPEKCSVQDCNNSPI
KGPLEDGGHTPRFCQDHRIPGRECRHPSGCTRLATHAPPLPPPPPSPASG
EGGKSPAAGAAAGAAGGAPEGGADAGRGGGDAGSGGVDGAAASASASAAA
GDGNGDTGGDGNGNGNGSTADGSAAAAASPPGSGAAAEGEEAKAAAEGEG
SSGGGGGDGGGGTPSADGDGGGATAMDVDVDVDREGG
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mRNA from alignment at S-firma_F_contig10718:15..1587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10718.969.1 ID=mRNA_S-firma_F_contig10718.969.1|Name=mRNA_S-firma_F_contig10718.969.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1573bp|location=Sequence derived from alignment at S-firma_F_contig10718:15..1587+ (Sphaerotrichia firma ET2_F female)
TCCTGCGAGTACGAGAGGTGCAGCAAAAGCCCCTCCTTTGGGTTCCCGGG
CCGCAAGGGAGGACAGTTCTGCGAAAAGCACCAGGAGGAGGGGATGGTAA
ACCTGCACCCCGAAAAGTGCTCGGTTCAGGACTGCAACAATGTCAGTGTC
GGTATTTCTTCTTGCGTTTTTTGTTGTCTTTTTGCGCTTTTGGCCTTGGT
TCGCCCCTCCCTCTTGTTGTGTCGAACGTGCGTACTGTCTGTACAATCAG
AAATTCGAAGAGTGTTGTCGTTTCCCGTTGCAGTTTCCTTTGCCTTTGTC
GTTGCCGTTGCCTTTGCCTTGCAGGAGCGCCTTTGAAGAAAAACGACGAA
GGGACCGCATTTGTGTGTGTGTTTCTGTTTGTTTTTTCTCGCCTCAGCTC
TCTATTCCAAAACATCCAATGGAGCCCCGTGGTAATATGTATGTGTACCT
CGTATTGTCGTATGTGTGTGTACCTCGTATTGTCATATGTATGTGTACCT
CGTATTGTCATATGTGTGTGTACCTCGTATTGTCATATGTATGTGTACCT
CGTATTGTCATTTGTATGTGTACCTCGTATTGTACGTGTACTCCAAGTAT
GCCGACTGTCAGTGACGTCAAGGGTTCTTTTGTTTTGCCGGTCCCTGGTT
TGTCTTTCCCCCCCTGTGCTGGCGAGATGCGTGATATAAATATTATACAT
TTTCCCTCAGGAAATCGACGCGAAAGCCACGCGAGTAGTATCACGCCGTT
GTGTCGTGCTCCCTGCCTCCTTTCCCTCCTTTCGCAGGGTTTCTCGTTTT
TTTTTTTTTTTTTTTACACCAGGGCGCCCGTGGTCTCGTCTTCTGTCAGC
CGCTTGGCAACGCTCCTCTGTAAGCCACCCGCTCTTTGTCTGCCCTGCCT
TGTCTTTGCTCGCCCTCCTCGCCCGCCCTCTTGCCTCTTGCACGTACCGT
ATCGTATCATCCGCGTGCAACCCAAATCCCACCAATCCAATTCAATCCCA
GTCTCCTATCAAGGGCCCGCTAGAGGACGGAGGACACACTCCGCGGTTCT
GTCAAGACCACCGCATCCCCGGCAGGGAGTGCCGACACCCTTCGGGGTGC
ACTCGCCTCGCCACCCACGCGCCGCCGCTCCCGCCGCCGCCTCCGTCTCC
CGCAAGCGGGGAGGGTGGTAAGTCACCCGCTGCTGGTGCCGCTGCTGGTG
CGGCTGGAGGTGCTCCGGAGGGCGGCGCGGACGCGGGCCGTGGCGGTGGG
GACGCCGGCAGTGGTGGTGTTGATGGTGCTGCTGCTTCCGCCTCGGCTTC
GGCAGCCGCCGGCGATGGTAATGGTGATACCGGCGGTGATGGAAATGGTA
ATGGTAATGGTTCTACCGCGGACGGGAGTGCCGCCGCCGCCGCTTCGCCG
CCGGGTAGTGGCGCCGCCGCCGAGGGGGAAGAAGCAAAAGCCGCCGCCGA
AGGAGAAGGCAGCAGTGGCGGCGGCGGCGGCGACGGCGGCGGTGGCACGC
CGAGCGCGGACGGAGACGGCGGCGGTGCGACGGCGATGGATGTGGATGTG
GATGTGGATCGCGAAGGCGGAGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10718:15..1587+

>mRNA_S-firma_F_contig10718.969.1 ID=mRNA_S-firma_F_contig10718.969.1|Name=mRNA_S-firma_F_contig10718.969.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1422bp|location=Sequence derived from alignment at S-firma_F_contig10718:15..1587+ (Sphaerotrichia firma ET2_F female)
TCCTGCGAGTACGAGAGGTGCAGCAAAAGCCCCTCCTTTGGGTTCCCGGG
CCGCAAGGGAGGACAGTTCTGCGAAAAGCACCAGGAGGAGGGGATGGTAA
ACCTGCACCCCGAAAAGTGCTCGGTTCAGGACTGCAACAATTCCTGCGAG
TACGAGAGGTGCAGCAAAAGCCCCTCCTTTGGGTTCCCGGGCCGCAAGGG
AGGACAGTTCTGCGAAAAGCACCAGGAGGAGGGGATGGTAAACCTGCACC
CCGAAAAGTGCTCGGTTCAGGACTGCAACAATTCTCCTATCAAGGGCCCG
CTAGAGGACGGAGGACACACTCCGCGGTTCTGTCAAGACCACCGCATCCC
CGGCAGGGAGTGCCGACACCCTTCGGGGTGCACTCGCCTCGCCACCCACG
CGCCGCCGCTCCCGCCGCCGCCTCCGTCTCCCGCAAGCGGGGAGGGTGGT
AAGTCACCCGCTGCTGGTGCCGCTGCTGGTGCGGCTGGAGGTGCTCCGGA
GGGCGGCGCGGACGCGGGCCGTGGCGGTGGGGACGCCGGCAGTGGTGGTG
TTGATGGTGCTGCTGCTTCCGCCTCGGCTTCGGCAGCCGCCGGCGATGGT
AATGGTGATACCGGCGGTGATGGAAATGGTAATGGTAATGGTTCTACCGC
GGACGGGAGTGCCGCCGCCGCCGCTTCGCCGCCGGGTAGTGGCGCCGCCG
CCGAGGGGGAAGAAGCAAAAGCCGCCGCCGAAGGAGAAGGCAGCAGTGGC
GGCGGCGGCGGCGACGGCGGCGGTGGCACGCCGAGCGCGGACGGAGACGG
CGGCGGTGCGACGGCGATGGATGTGGATGTGGATGTGGATCGCGAAGGCG
GATCTCCTATCAAGGGCCCGCTAGAGGACGGAGGACACACTCCGCGGTTC
TGTCAAGACCACCGCATCCCCGGCAGGGAGTGCCGACACCCTTCGGGGTG
CACTCGCCTCGCCACCCACGCGCCGCCGCTCCCGCCGCCGCCTCCGTCTC
CCGCAAGCGGGGAGGGTGGTAAGTCACCCGCTGCTGGTGCCGCTGCTGGT
GCGGCTGGAGGTGCTCCGGAGGGCGGCGCGGACGCGGGCCGTGGCGGTGG
GGACGCCGGCAGTGGTGGTGTTGATGGTGCTGCTGCTTCCGCCTCGGCTT
CGGCAGCCGCCGGCGATGGTAATGGTGATACCGGCGGTGATGGAAATGGT
AATGGTAATGGTTCTACCGCGGACGGGAGTGCCGCCGCCGCCGCTTCGCC
GCCGGGTAGTGGCGCCGCCGCCGAGGGGGAAGAAGCAAAAGCCGCCGCCG
AAGGAGAAGGCAGCAGTGGCGGCGGCGGCGGCGACGGCGGCGGTGGCACG
CCGAGCGCGGACGGAGACGGCGGCGGTGCGACGGCGATGGATGTGGATGT
GGATGTGGATCGCGAAGGCGGA
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