mRNA_S-firma_F_contig1070.953.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1070.953.1
Unique NamemRNA_S-firma_F_contig1070.953.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1070.953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1070contigS-firma_F_contig1070:21419..23387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size571
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1070.953.1prot_S-firma_F_contig1070.953.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1070 22956..23387 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.6623302-UTR-S-firma_F_contig1070:21418..214701622815610.6623302-UTR-S-firma_F_contig1070:21418..21470Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1070 21419..21470 +
1696949452.3854034-UTR-S-firma_F_contig1070:21418..214701696949452.3854034-UTR-S-firma_F_contig1070:21418..21470Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1070 21419..21470 +
1622815610.67818-UTR-S-firma_F_contig1070:22869..229551622815610.67818-UTR-S-firma_F_contig1070:22869..22955Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1070 22870..22955 +
1696949452.395593-UTR-S-firma_F_contig1070:22869..229551696949452.395593-UTR-S-firma_F_contig1070:22869..22955Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1070 22870..22955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.6929414-CDS-S-firma_F_contig1070:22955..233871622815610.6929414-CDS-S-firma_F_contig1070:22955..23387Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1070 22956..23387 +
1696949452.4087253-CDS-S-firma_F_contig1070:22955..233871696949452.4087253-CDS-S-firma_F_contig1070:22955..23387Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1070 22956..23387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1070.953.1

>prot_S-firma_F_contig1070.953.1 ID=prot_S-firma_F_contig1070.953.1|Name=mRNA_S-firma_F_contig1070.953.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=144bp
MPSILEPVCAIKGPPQPRPCDETDASTRREKRIPTPAGGPEARAPAAAPA
GVAATERFNRLCPFARKPTKPSKPTRRRLRGGGSMIDTHRRVGRCCESGS
PAGGPSPLAPKRPRRRRPSGTSSGWATGGSGSGSGSGGGGGGSR
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mRNA from alignment at S-firma_F_contig1070:21419..23387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1070.953.1 ID=mRNA_S-firma_F_contig1070.953.1|Name=mRNA_S-firma_F_contig1070.953.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1969bp|location=Sequence derived from alignment at S-firma_F_contig1070:21419..23387+ (Sphaerotrichia firma ET2_F female)
CGCATTTGTGTACACTGCTTGCGCCGCTGAGAAGGGAGAGAGAGAGAGGA
AGGTGAGCTGGGCGTGTGGTTATCGTGGCGTCCAGGCCGTGATCTTCTGT
GTCTGAACCCCCACCGACTTGTGTGCACCACACCGTGGCCCACCCAGCAA
CAACAGCAGCTTAGTGCGCGTGGAGAGAGAGGGCATTAGAACCTCGCATG
GGTCATTGATCAGTGGTGGCGCCTTACAACAACACTGCTTATTGCAGCGC
CACCCCTTGTTGCAGCTTCCCTGGGTGGTAGACTGGTGGAGCATGGTTGA
TGCTTGTTGATGAAACGAGAGCAGCAGCTGGTGGAGATAGGAGGTGCTAC
GAGAGAGATAGACTTTCCAAAGCGGCGGGGTGTGCGGCGGAGTAGACTAC
GCTGGTGCTGCTGCTGTTCGAGCTCACCGCCGCACAGGTTCTACTGCTAC
TGCGGCTGCTACTGCTAGGACTTACGCCAGACTCAGCAGTGCTTGTGGCG
ATCTATCACATCCGCCACGCATCTATTGTGCATGCGCTGTTGTGGTGGCG
AACAACCCTGCCCGTTGCGCGCCCTCGCCGATTTTGAAGGGAGAGAACCA
ACATTTTCGGTCTAACTTTCAGTTGTGTGTGACGTGGAAGAATACCCGAG
AATGGACTTCAACAGGGTGTTGTGGTGTTGTTTTGGTTTTTTGGGACCCA
CACCAGTGCTGCTACTGCCTGCTGCGGCAGTGCTCATGACCCACCGTTCC
TCTGTCTGTCTGTCTGTCTGTATGTCTGTCTCTCTCGCACCATAATATCC
TTGTTGGATTCTCACTGAAAACGACCTGCTGCGTCTTTCTCGTCCCGGGT
GCAGCTACAAGAGAAGGTCCCAAGCTCTTCGCGTTTTCGGGCGGCACTTT
TCTCACATTGGTATATTCGCCTGTCTGGGTTATGAGAGACGCTACTGCTG
CGTACAGGATGCAGCAGTGATAACTGTGGATGGGTCGTAGTGGTGGTGGC
CAGCAAGAAACGCAAAACTCCCTACAATCATGTGATCATGTGTATGGTCC
GTCACTTGCCCTATCCAGACGATTCAACCATTCAACCATTCAACCACCCG
CCGCTGGTCTGGATTTCCCGCGTTCCTTCCGCCGCACCCTGTTTGGGAGC
CGAGGGTCGTTGCGAATCGCGAGTCTTCTTTCCACACACACCAACCCCAG
TCGCGTTTTCGCTTTTGTCTCATGCATGTACATATCATACATACATTGGC
ACCGCAATTTGTGGTTTCTTCGCAACTTCGGTGGCTCACGCCTGAAAAAC
AGCAAAGCAAACTCGTTTCGTTGTACATGCATAAACAGCACGTGCAAGCG
GCACAGCAGCAACAGAGCCACCCAACTCGCTCACCCCTTGCCCCCGCCCC
CATCCGCTTCCGCGATCCGATCAACCGTGCCCCAACCGCCGCTCCACCCA
GGAGCTTTCCCTTCGAACAATCACCCCTTCACCTTCACCTTGGGCACCGG
GCGCGCGCACAGCACAGAGGCGGGAACCGGGCATGGCATGCCGTCGATTT
TGGAGCCTGTGTGCGCAATAAAGGGGCCACCGCAGCCGCGACCTTGCGAT
GAAACCGATGCTTCGACGCGGAGAGAGAAACGAATCCCCACACCGGCGGG
AGGCCCGGAAGCACGTGCCCCGGCAGCAGCGCCGGCAGGGGTCGCCGCCA
CGGAGCGGTTCAACCGTTTGTGCCCGTTCGCGAGGAAACCGACGAAACCG
TCGAAACCGACGAGAAGGCGGTTACGGGGCGGAGGTTCGATGATAGACAC
GCATCGCAGGGTCGGTCGATGTTGTGAGTCCGGCAGCCCGGCGGGGGGGC
CGTCGCCCTTGGCGCCGAAACGGCCGCGGCGGCGACGGCCATCGGGAACA
AGCTCGGGGTGGGCGACCGGCGGAAGCGGAAGCGGAAGCGGAAGCGGCGG
CGGCGGCGGCGGCAGCCGG
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Coding sequence (CDS) from alignment at S-firma_F_contig1070:21419..23387+

>mRNA_S-firma_F_contig1070.953.1 ID=mRNA_S-firma_F_contig1070.953.1|Name=mRNA_S-firma_F_contig1070.953.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=864bp|location=Sequence derived from alignment at S-firma_F_contig1070:21419..23387+ (Sphaerotrichia firma ET2_F female)
ATGCCGTCGATTTTGGAGCCTGTGTGCGCAATAAAGGGGCCACCGCAGCC
GCGACCTTGCGATGAAACCGATGCTTCGACGCGGAGAGAGAAACGAATCC
CCACACCGGCGGGAGGCCCGGAAGCACGTGCCCCGGCAGCAGCGCCGGCA
GGGGTCGCCGCCACGGAGCGGTTCAACCGTTTGTGCCCGTTCGCGAGGAA
ACCGACGAAACCGTCGAAACCGACGAGAAGGCGGTTACGGGGCGGAGGTT
CGATGATAGACACGCATCGCAGGGTCGGTCGATGTTGTGAGTCCGGCAGC
CCGGCGGGGGGGCCGTCGCCCTTGGCGCCGAAACGGCCGCGGCGGCGACG
GCCATCGGGAACAAGCTCGGGGTGGGCGACCGGCGGAAGCGGAAGCGGAA
GCGGAAGCGGCGGCGGCGGCGGCGGCAGCCGGATGCCGTCGATTTTGGAG
CCTGTGTGCGCAATAAAGGGGCCACCGCAGCCGCGACCTTGCGATGAAAC
CGATGCTTCGACGCGGAGAGAGAAACGAATCCCCACACCGGCGGGAGGCC
CGGAAGCACGTGCCCCGGCAGCAGCGCCGGCAGGGGTCGCCGCCACGGAG
CGGTTCAACCGTTTGTGCCCGTTCGCGAGGAAACCGACGAAACCGTCGAA
ACCGACGAGAAGGCGGTTACGGGGCGGAGGTTCGATGATAGACACGCATC
GCAGGGTCGGTCGATGTTGTGAGTCCGGCAGCCCGGCGGGGGGGCCGTCG
CCCTTGGCGCCGAAACGGCCGCGGCGGCGACGGCCATCGGGAACAAGCTC
GGGGTGGGCGACCGGCGGAAGCGGAAGCGGAAGCGGAAGCGGCGGCGGCG
GCGGCGGCAGCCGG
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