mRNA_S-firma_F_contig107.946.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig107.946.1
Unique NamemRNA_S-firma_F_contig107.946.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig107.946.1 vs. uniprot
Match: D8LE94_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE94_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.280e-26
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 MAETDPVKIEALKGNAIRGLSNYLVHESGSNDPQLKKRMDAVKTHALADLKNREQEEGGDR 183
            M ETDPVKIEALKG AIRGLSNYLVHESGSNDPQLKKRM+AVKTHALADLK R+QE  G R
Sbjct:   47 MGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQERDGKR 107
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BLAST of mRNA_S-firma_F_contig107.946.1 vs. uniprot
Match: A0A2D4CFG3_PYTIN (Complex1_LYR_dom domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFG3_PYTIN)

HSP 1 Score: 52.4 bits (124), Expect = 2.070e-5
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    4 AETDPVKIEALKGNAIRGLSNYLVHESGSNDPQLKKRMDAVKT 132
            +ETDP KIEALK NA+RGLSNYLV  + S D  L++ M A  T
Sbjct:   48 SETDPEKIEALKANAVRGLSNYLVMANSSKDKNLQQAMKATPT 90
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BLAST of mRNA_S-firma_F_contig107.946.1 vs. uniprot
Match: A0A7S2W976_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W976_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.080e-5
Identity = 23/37 (62.16%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   13 DPVKIEALKGNAIRGLSNYLVHESGSNDPQLKKRMDA 123
            DP +IEAL+ NA+R LSNY+++ESGS DP+L++RM A
Sbjct:   61 DPKEIEALRANAVRALSNYMLYESGSKDPRLRERMKA 97
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BLAST of mRNA_S-firma_F_contig107.946.1 vs. uniprot
Match: F0WZY3_9STRA (Uncharacterized protein AlNc14C451G11726 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZY3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.670e-5
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    7 ETDPVKIEALKGNAIRGLSNYLVHESGSNDPQLKKRMDAVKTHALA 144
            ETDP KIEALK NA+RGLSNYLV  + S D +LK   +A+KT A A
Sbjct:   49 ETDPEKIEALKANAVRGLSNYLVMANASKDIKLK---NAMKTDANA 91
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BLAST of mRNA_S-firma_F_contig107.946.1 vs. uniprot
Match: A0A835Z7F8_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F8_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.800e-5
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    7 ETDPVKIEALKGNAIRGLSNYLVHESGSNDPQLKKRMDAVKTHALADL 150
            ETDP ++  LK  A+RGLSNY +HES S D +LK RM+  +    A++
Sbjct:   50 ETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEI 97
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig107.946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LE94_ECTSI3.280e-2686.89Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A2D4CFG3_PYTIN2.070e-560.47Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A7S2W976_9STRA2.080e-562.16Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0WZY3_9STRA2.670e-563.04Uncharacterized protein AlNc14C451G11726 n=1 Tax=A... [more]
A0A835Z7F8_9STRA5.800e-547.92Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig107contigS-firma_F_contig107:40954..42392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog653948.CCA27064
PFAMsComplex1_LYR
Max annot lvl2759|Eukaryota
KEGG koko:K22069
Evalue6.85e-08
EggNOG OGs2CGFU@1|root,2S1BH@2759|Eukaryota
DescriptionComplex 1 protein (LYR family)
COG categoryS
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_001390.1
Exons3
Model size730
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig107.946.1prot_S-firma_F_contig107.946.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig107 41498..42392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.1168869-UTR-S-firma_F_contig107:40953..414971622815610.1168869-UTR-S-firma_F_contig107:40953..41497Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig107 40954..41497 -
1696949452.0864897-UTR-S-firma_F_contig107:40953..414971696949452.0864897-UTR-S-firma_F_contig107:40953..41497Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig107 40954..41497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.136464-CDS-S-firma_F_contig107:41497..415941622815610.136464-CDS-S-firma_F_contig107:41497..41594Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig107 41498..41594 -
1696949452.100214-CDS-S-firma_F_contig107:41497..415941696949452.100214-CDS-S-firma_F_contig107:41497..41594Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig107 41498..41594 -
1622815610.1508985-CDS-S-firma_F_contig107:41961..420061622815610.1508985-CDS-S-firma_F_contig107:41961..42006Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig107 41962..42006 -
1696949452.113028-CDS-S-firma_F_contig107:41961..420061696949452.113028-CDS-S-firma_F_contig107:41961..42006Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig107 41962..42006 -
1622815610.1647217-CDS-S-firma_F_contig107:42348..423921622815610.1647217-CDS-S-firma_F_contig107:42348..42392Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig107 42349..42392 -
1696949452.1285813-CDS-S-firma_F_contig107:42348..423921696949452.1285813-CDS-S-firma_F_contig107:42348..42392Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig107 42349..42392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig107.946.1

>prot_S-firma_F_contig107.946.1 ID=prot_S-firma_F_contig107.946.1|Name=mRNA_S-firma_F_contig107.946.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=62bp
MAETDPVKIEALKGNAIRGLSNYLVHESGSNDPQLKKRMDAVKTHALADL
KNREQEEGGDR*
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mRNA from alignment at S-firma_F_contig107:40954..42392-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig107.946.1 ID=mRNA_S-firma_F_contig107.946.1|Name=mRNA_S-firma_F_contig107.946.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1439bp|location=Sequence derived from alignment at S-firma_F_contig107:40954..42392- (Sphaerotrichia firma ET2_F female)
ATGGCGGAGACGGATCCTGTGAAGATTGAGGCGCTCAAGGGGAAGTGAGA
GTCCAACCAACCTCCAGCCTAGAAGACTATTTAGACTAGATGCCACTGCG
CCGCTGCTTTGCAGTGTGTAGACACTGCTCGCGGTTCTTGTTCTCAGTAA
CTACCAGGGCTCGCTTTCGCTTGAAAACCCCCCGGAGGGAAACAGTCCCC
TGAGGTGGCACATACCGACCAATGCGCGTATCGTCGGGGGTCATGCCATC
GATTGGTTGCTGCTCCGAGTGCTCTTCTGCCTGGCTCTCCATCCCTATTT
TAGTCTAATCCTTGACCCGGCGTTCTGTGTCCAACTGCTGTGTCCAACCC
CTGCTGCGTGTGTACGTCCACGCCGGCACCCGGCAGCGCAATACGAGGGC
TGTCCAACTACTTGGTGCACGAGTCGGGGAGGTGAGAAAGCAAAGCCAAA
CTAAACATTTTTGACAGGCGCTGTAGTCGTTGTTGTGTGCGCTGGCACTG
CTGGGCCTCAGTTGACGCCGCGCGAGGTGTCTTACCACTCTATTTGGTCC
CCTAGCTTGGGTTGGCGTATCTGGTGGTTTTCAGTCTAAGAACCCTGTCT
TAAGGGGAGGGGACTCCAAGGTCCTGTCGCCCAACTAGCTTGTCTCAGCG
CAACCACCCCTAGGTTAACGCGAACTTGCGGCGAAACTAGACTTGGTGGC
TCTCGCAACCGCCTGCTTCGTCCATCCGCCTTCGCTCTGTCTTCGTGCCG
TGCCTGATCCTTCTGCACCATCGTCGCCGTTTATACCTTGGCGACCAGCA
ATGACCCGCAATTGAAGAAGCGAATGGACGCTGTCAAGACGCATGCCTTG
GCAGATCTCAAGAACCGCGAGCAGGAGGAGGGAGGGGATCGGTGACGACC
GCTCCCCGCGCTTGGCTTGCGGGTCAACAAATGTCTCTACCCCCCCCCCC
CCCCTCCCGCCGTGAATTTTGTTTTTCGGGAGGGGCTGCTTTGGTGCCAT
AGGTTCCCGCTTGGCTGTGTTAGGTGCAGTAGCTGTGCTGTGACTCAGAA
GAAAAAGTCGTTGGTGCAGACAATCAGCCTCTAAGGCAGATGGAAAAAAC
AAGCACTAGAACACCTCAACAAGATGTAGGCGCGATTCGGTACACCGGGA
ACAGCGATCTCCTGTTTGGGCGGGGACCACATACAACAGATTTTCAGGCA
AGGGTGTGCCGATGAGCACAAGGATAAGGAGGAAGTTGCGGTGTGCCGTG
TCGGTTCGGGTGTGATTTTACCAGGCACCACCACCACCAACGCCTGCTTT
TTGCAGGGGAAGAAATCGATTTCTTGGCAAGTTTCGATTTGCAGCGAGAA
GCGAATGGGGTGTTTGCCGTTGAAGGCTCCACGCACGCGGAAGCAGCGAC
AACATCAGCTGCACAACTTCCAGCGTGTGTTCTCTTGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig107:40954..42392-

>mRNA_S-firma_F_contig107.946.1 ID=mRNA_S-firma_F_contig107.946.1|Name=mRNA_S-firma_F_contig107.946.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=372bp|location=Sequence derived from alignment at S-firma_F_contig107:40954..42392- (Sphaerotrichia firma ET2_F female)
ATGGCGGAGACGGATCCTGTGAAGATTGAGGCGCTCAAGGGGAAATGGCG
GAGACGGATCCTGTGAAGATTGAGGCGCTCAAGGGGAACGCAATACGAGG
GCTGTCCAACTACTTGGTGCACGAGTCGGGGAGCGCAATACGAGGGCTGT
CCAACTACTTGGTGCACGAGTCGGGGAGCAATGACCCGCAATTGAAGAAG
CGAATGGACGCTGTCAAGACGCATGCCTTGGCAGATCTCAAGAACCGCGA
GCAGGAGGAGGGAGGGGATCGGTGACAATGACCCGCAATTGAAGAAGCGA
ATGGACGCTGTCAAGACGCATGCCTTGGCAGATCTCAAGAACCGCGAGCA
GGAGGAGGGAGGGGATCGGTGA
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