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Homology
BLAST of mRNA_S-firma_F_contig107.941.1 vs. uniprot
Match: D8LE89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE89_ECTSI) HSP 1 Score: 304 bits (779), Expect = 1.410e-96 Identity = 232/407 (57.00%), Postives = 257/407 (63.14%), Query Frame = 1
Query: 139 QKRMGSNVASAWMDDMISKGFVRRGFLPPHAGGAPASRHVGSPIEMIHTPSAAGLVIGSGNPPSPAPAQQRL---VQETGS-SRNWLQAPLRECARNAGDDGALARSLLDAGAATDILDRAGRSPLHWACTRGNTAV--AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAAAALRAPXXXXXXXXXXAAVVEKASPFA--MHYDESMLSIVDARNAYGSTALHRAAFNGRDGVVLALLRGGAGVSVVGRSGRSALHLACQNAHPACVGILLAWGADESARANDGSTPWTELAHAAEIRPAGCPRVAETARLLNAARGSRAWGRRGWLLMLKDEHNRQMVEV---------GEEGDDGDGVCADLAGLVGQLLAVGEEGCFRMVVGFL 1308
Q G + AW +DMISKGFV++ LP H GG PA+ H GSPIE I P AA + + VQETG+ SR WLQ+PLR+CARNA DDGALARSLLDAGA T+ D GRSPLHWACTRGNTAV AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G A+L AP E + P A M + SIVDARN YGSTALHRAAFNGR+GVVLALLRGGA V VVG SGR ESA A DGSTPW++LA AAE RP GCPRVA+TA LLN ARG+RAW RRGWLLML+D+HNR + E G D DG D A LV QL+ +GEEGCFR+VVGFL
Sbjct: 2 QDGQGDGMNMAWFNDMISKGFVKQRHLPQHTGGPPAAGHAGSPIESILNPDAANENRSPDSDQAXXXXXXXXXXQVQETGAASRTWLQSPLRDCARNADDDGALARSLLDAGAPTNFFDSTGRSPLHWACTRGNTAVVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFYGFAPIGLPPGNVPASLVAPALEAE---------ELSWPMAAPMPQQNGVESIVDARNVYGSTALHRAAFNGREGVVLALLRGGADVCVVGNSGRXXXXXXXXXXXXXXXXXXXXXXXXESAIAKDGSTPWSQLALAAETRPRGCPRVAKTALLLNTARGARAWARRGWLLMLRDKHNRGVFEAEAIDLDGRGGACSDMEDGQGEDFARLVNQLVGIGEEGCFRLVVGFL 399
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D8LE89 |
| PFAMs | Ank_2,Ank_5 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.82e-97 |
| EggNOG OGs | COG0666@1|root,KOG4177@2759|Eukaryota |
| Description | spectrin binding |
| COG category | I |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ankyrin repeat |
| Ec32 ortholog | Ec-00_001340.1 |
| Exons | 7 |
| Model size | 1311 |
| Cds size | 1164 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815609.4795003-CDS-S-firma_F_contig107:14903..15026 | 1622815609.4795003-CDS-S-firma_F_contig107:14903..15026 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 14904..15026 - |
| 1696949451.555121-CDS-S-firma_F_contig107:14903..15026 | 1696949451.555121-CDS-S-firma_F_contig107:14903..15026 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 14904..15026 - |
| 1622815609.4926863-CDS-S-firma_F_contig107:15164..15423 | 1622815609.4926863-CDS-S-firma_F_contig107:15164..15423 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 15165..15423 - |
| 1696949451.5689833-CDS-S-firma_F_contig107:15164..15423 | 1696949451.5689833-CDS-S-firma_F_contig107:15164..15423 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 15165..15423 - |
| 1622815609.508798-CDS-S-firma_F_contig107:15789..16232 | 1622815609.508798-CDS-S-firma_F_contig107:15789..16232 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 15790..16232 - |
| 1696949451.5801802-CDS-S-firma_F_contig107:15789..16232 | 1696949451.5801802-CDS-S-firma_F_contig107:15789..16232 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 15790..16232 - |
| 1622815609.5250666-CDS-S-firma_F_contig107:17067..17205 | 1622815609.5250666-CDS-S-firma_F_contig107:17067..17205 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 17068..17205 - |
| 1696949451.58947-CDS-S-firma_F_contig107:17067..17205 | 1696949451.58947-CDS-S-firma_F_contig107:17067..17205 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 17068..17205 - |
| 1622815609.5358126-CDS-S-firma_F_contig107:17453..17595 | 1622815609.5358126-CDS-S-firma_F_contig107:17453..17595 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 17454..17595 - |
| 1696949451.5981104-CDS-S-firma_F_contig107:17453..17595 | 1696949451.5981104-CDS-S-firma_F_contig107:17453..17595 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 17454..17595 - |
| 1622815609.5505607-CDS-S-firma_F_contig107:18168..18227 | 1622815609.5505607-CDS-S-firma_F_contig107:18168..18227 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 18169..18227 - |
| 1696949451.6085987-CDS-S-firma_F_contig107:18168..18227 | 1696949451.6085987-CDS-S-firma_F_contig107:18168..18227 | Sphaerotrichia firma ET2_F female | CDS | S-firma_F_contig107 18169..18227 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815609.5656462-UTR-S-firma_F_contig107:18227..18246 | 1622815609.5656462-UTR-S-firma_F_contig107:18227..18246 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig107 18228..18246 - |
| 1696949451.6187038-UTR-S-firma_F_contig107:18227..18246 | 1696949451.6187038-UTR-S-firma_F_contig107:18227..18246 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig107 18228..18246 - |
| 1622815609.5783188-UTR-S-firma_F_contig107:18725..18853 | 1622815609.5783188-UTR-S-firma_F_contig107:18725..18853 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig107 18726..18853 - |
| 1696949451.6271818-UTR-S-firma_F_contig107:18725..18853 | 1696949451.6271818-UTR-S-firma_F_contig107:18725..18853 | Sphaerotrichia firma ET2_F female | UTR | S-firma_F_contig107 18726..18853 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig107.941.1 >prot_S-firma_F_contig107.941.1 ID=prot_S-firma_F_contig107.941.1|Name=mRNA_S-firma_F_contig107.941.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=388bp
MGSNVASAWMDDMISKGFVRRGFLPPHAGGAPASRHVGSPIEMIHTPSAA GLVIGSGNPPSPAPAQQRLVQETGSSRNWLQAPLRECARNAGDDGALARS LLDAGAATDILDRAGRSPLHWACTRGNTAVAVALLDAGADGLARDGAGKT PLHCAAQVGHTPIVQALLDSYGFGSAPDGLAAAALRAPPPPPPPPASQAA VVEKASPFAMHYDESMLSIVDARNAYGSTALHRAAFNGRDGVVLALLRGG AGVSVVGRSGRSALHLACQNAHPACVGILLAWGADESARANDGSTPWTEL AHAAEIRPAGCPRVAETARLLNAARGSRAWGRRGWLLMLKDEHNRQMVEV GEEGDDGDGVCADLAGLVGQLLAVGEEGCFRMVVGFL* back to topmRNA from alignment at S-firma_F_contig107:14904..18853- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_F_contig107.941.1 ID=mRNA_S-firma_F_contig107.941.1|Name=mRNA_S-firma_F_contig107.941.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3950bp|location=Sequence derived from alignment at S-firma_F_contig107:14904..18853- (Sphaerotrichia firma ET2_F female) TTGGTGTCAATCTGGATACACTGCTGCTCGCTGTTTCGCTGTTTCCGCCG
GCGCTGACCGCTCCACACTGCGCACCCTCCCACATATCTCTGCTCTGCAA
GTCGAAGCCTTGCTGCTGGTGAAACTTGGTGAGTGCATGTGTGGGCGTGC
CCCGCGAGCTGCGAGCTGCTGCTGCAGCGGAGGAACAGCGCCGATGGGGA
ACGGTGCGCATTGGGGAGGGAGGGGGTCTGTTTGTCTGTGCGGCAGGGAT
CTGCTGTCTGCCGTGGCAGTTGAGCTGTATCCGGATACTTTGTCACAGTG
TGCACTTTCGATCCAGCGAGCGGGTACTGCATGGGCGGCTTACTGTTCGG
CCGTTGTGACTCAGCCGCCGCCGGAACAGAACGAGCCGCTAGGCGCGTGT
GGCGTTTCGTGTGTCACAGCAGCAGTTGCTGGGATAATTTGAGGTTTCTA
ACCGCCCCCGTGCCCGAACGCGGTGGTTGAAGAAATAATTTTTTCAATAA
ATTCGACATGCTGAACCTGGAACATGGTGTAAACATAATACAGGCACACC
CTCAACTTGAGCCCGCCCGCTTGTTTTACCCCACGTGCTGTCACATGTTG
AACCCAGCGTACACCACCAAAAAAGAATGGGGTCCAACGTGGCTTCTGCG
TGGATGGACGACATGATCTCCAAGGGATTCGTGAGGTGAGTCGCCCCCCG
CTCGTTCCACCGTCCACGGAAGTTTACGTCATCCGTTAGAAAAGCAGCCA
TTCCTGTGTGGCGCGTGATAGGCCCACCACCCGCAGATTGGTTGGAAGAT
TGTTTTTCAGCTGTTGTTTCGCACCAAACATTAAAAACTCAAAAAAAAAA
GCTCGAGGTTCGTGCCGTCGAACACGGTCGTTGGTGCTGCTGAGCGCTTG
TGCTATACGGCGCTGTAAAGGAACCGGCGGTAAATTTGCTGATGAGTAGA
AAAACTGCTTTACCCACAGCTCGCAAGATAACTTCTCTCTCCGACACGTG
GTATTGGCTCTCAAGGATGTCATACAGGCTGCAACAACCTAGGTGTGCCC
GCGGTGGCGCTGTTGAGCGTGTTCTATTGTTGCCCAGTGGGTCTGTCTGT
TTTCACCCTTTGGTGTCCGGTGTTCCAAGGACGACGTCCAGGACAACTCC
CCCCCCCCCCTCCCGCCCCGCCGCGAAATCAAATGGCATGCTCGACGAAA
AACGCAACGCCCTGTCTCGACGAACTCTAACGTTAGTCGTGTCGCCACTC
CACCGCAGGCGAGGCTTTCTCCCGCCTCACGCGGGGGGCGCGCCCGCTTC
CCGGCACGTGGGAAGCCCCATCGAGATGATCCATACCCCCAGCGCCGCCG
GATTAGTGATCGGCAGCGGTAATCCGCCGTCGCCCGCTCCGGCGCAGCAG
GTGATTGGCTCTCCATTTCTCGGTGTTTTTTTCTTGGCAGGTCTGATCGG
TTTGTTGCACCTCTAAAAACTTCTGGTGGTGCAGCGTGGCGCTACGTGCA
TGGCTACGCGAGAGACGATATTCGGCGGGGGGGCGGGGCGGTGTGGTTGT
TTTGCTGCGTGTCGAAAGTTTTGATGTTGCCTGGTCGCTGATTTAATCCC
CCCTCCCCACCGACAACGCCCCCAATCCCCCGCCCCCCCCGTCCGCAGCG
GCTTGTCCAGGAAACGGGCTCGTCGCGGAACTGGCTGCAGGCCCCTCTGC
GAGAATGCGCGCGAAACGCTGGGGATGACGGAGCGCTCGCCCGATCCTTG
CTGGATGCTGGTGCTGCTACTGATATTCTCGACAGGGTGAGTGAAACGAG
CGCCGCCTTGAGAACCCCGACAAGGAAGCAGGAGTTGGGGCGGATCTTCC
GGTCGGCGGCTGGCACAATCTACGTATGTTCGTGCTTTTCTCGAAACCTG
ACGAGACCGTGCGAGGGGCCTGGTGTGTGCTCGTTGTCTGCGTGTGAAGA
GGGGGGAGTTCATTTGTTGCCTCGCCGCGCCTGAGAGCGCCCGATCCAAA
AGTGGGGAAGTTTCGCGATTCGTCGCGTGTGCCTTATTTTTGTTGGTTCA
TGTTTGAGCACACGAGGCGGAGGATGTTTCAACTTTTCAGCGTACGCGCG
ATTTACGCCGCGTGTCGGAGAAGGATCCAAGTCGAGTCTCGTGCGCCCCT
GCGTAGACCCCAACGCATTCCACGCGATTGCCGTTTTGTGTTTCTTGCCG
AAGAAGCGCGCGGAGCCTTGCGCCTCCCCCGCTCTTGCACTCGCGGCAAC
TATACCCCCCCCCGCCCGCCAGAATAGTCACTCGGCCCACCCCAGCAATC
TCCCTAGTCTGTTCTCGTTGAATCCTTTTCTTTTTCTAAATTAGCTTGGA
TATCCGCCGCTGCCTAAGGCAGCTTGTGCTCAACTCTCCGCCGCCACAGA
CACACAGCAGCTCCTTCTTGGTCTCCTACCGCTTGCGTTAACGGGGTCTT
CGTAGAATGGGGGTACGGCGTAAACCATTCGCCCACCGCAGGAGTTGCAT
TTTCGGCGTCGGCCGTTGTTCTCATCCCACTCTTTGACCGGCACAGCAGT
CAGTGTTTACCCAGCCGCTAATTTTTGCTACTGTATGCTCCACATTTGTT
CCCCACTACCCCGACACGCAGGCCGGAAGATCCCCTCTCCACTGGGCGTG
CACCCGAGGGAACACGGCCGTCGCCGTGGCGCTCCTCGACGCCGGCGCCG
ACGGCCTCGCCCGCGACGGCGCCGGAAAAACTCCCCTCCACTGTGCCGCC
CAAGTAGGACACACCCCCATCGTCCAGGCGTTGCTCGACAGCTACGGCTT
CGGCTCCGCGCCCGACGGGTTGGCAGCGGCAGCACTTCGCGCGCCGCCGC
CGCCGCCGCCGCCGCCGGCCTCTCAGGCGGCCGTTGTCGAGAAGGCATCT
CCGTTCGCGATGCACTATGACGAGAGCATGTTGTCGATTGTGGATGCCCG
GAATGCCTACGGCAGCACGGCGCTGCACCGAGCGGCGTTCAACGGTCGGG
ACGGTGTGGTCCTGGCGCTACTGCGGGGCGGGGCCGGCGTGTCCGTCGTC
GGAAGAAGCGGGAGGTGAGGATGCTCTCTCGAGCGAGGCCTCCCAGCCTT
TTTGTATTTGCACCTGTGATGTTTGGCCGCGGACCGTGGTTTCGCCCACA
ACTGAAGGTTCCAGCAAAACATGATAGGAAGAGTTCGTGAGTTGAACGGG
TGTGGCGCCCACCTCTCGTGATATTTGAGCGACGAAAGAGGTATCGTGTG
CTTGTTCCGCTTCCCATCTCTCGAATCCCGCGACAACCCGTCCAGACCCC
GCTTTTTGCCAAGACCCGGCTCTTCTGACCGATCCGCTGTGCTCCGACGA
CCAACTCCCAACCACTCCCCTGTCTCGCCCCCAACCCCCAACGCCCTTAC
AAACGCCCAAAAAAAAAAAAAAAAAAACAGGAGCGCGCTCCACCTCGCGT
GCCAAAACGCCCACCCTGCCTGTGTCGGGATCCTCCTCGCCTGGGGCGCC
GACGAATCCGCCAGGGCGAACGACGGCTCCACCCCGTGGACCGAGCTCGC
GCACGCCGCCGAGATCCGCCCCGCCGGCTGCCCGCGCGTCGCCGAGACGG
CCCGCCTGCTCAACGCCGCCCGCGGCTCTCGCGCGTGGGGCCGGCGAGGC
TGGCTGCTGATGCTCAAGGACGAGCACAACCGACAGATGGTGCGGCGGAC
GGCCGAGGCCGAGGAGCGAGGGTCGGAGATGATGCTGGAGGGCGAGGGCG
AAGGCCAGGGGGAGGGGTCCGGGGACGGCGGCCGGGCACCTCGGGGGGGC
GTATCCCGGGGGGACGGCGGCATGGAGGTGGAGGTCGGCGAGGAGGGTGA
CGATGGGGATGGGGTGTGCGCAGATCTGGCGGGGCTGGTGGGCCAGCTGT
TGGCCGTGGGCGAGGAAGGGTGCTTCCGCATGGTGGTTGGTTTCCTTTAA
back to topCoding sequence (CDS) from alignment at S-firma_F_contig107:14904..18853- >mRNA_S-firma_F_contig107.941.1 ID=mRNA_S-firma_F_contig107.941.1|Name=mRNA_S-firma_F_contig107.941.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2328bp|location=Sequence derived from alignment at S-firma_F_contig107:14904..18853- (Sphaerotrichia firma ET2_F female) ATGGGGTCCAACGTGGCTTCTGCGTGGATGGACGACATGATCTCCAAGGG ATTCGTGAGATGGGGTCCAACGTGGCTTCTGCGTGGATGGACGACATGAT CTCCAAGGGATTCGTGAGGCGAGGCTTTCTCCCGCCTCACGCGGGGGGCG CGCCCGCTTCCCGGCACGTGGGAAGCCCCATCGAGATGATCCATACCCCC AGCGCCGCCGGATTAGTGATCGGCAGCGGTAATCCGCCGTCGCCCGCTCC GGCGCAGCAGGCGAGGCTTTCTCCCGCCTCACGCGGGGGGCGCGCCCGCT TCCCGGCACGTGGGAAGCCCCATCGAGATGATCCATACCCCCAGCGCCGC CGGATTAGTGATCGGCAGCGGTAATCCGCCGTCGCCCGCTCCGGCGCAGC AGCGGCTTGTCCAGGAAACGGGCTCGTCGCGGAACTGGCTGCAGGCCCCT CTGCGAGAATGCGCGCGAAACGCTGGGGATGACGGAGCGCTCGCCCGATC CTTGCTGGATGCTGGTGCTGCTACTGATATTCTCGACAGGCGGCTTGTCC AGGAAACGGGCTCGTCGCGGAACTGGCTGCAGGCCCCTCTGCGAGAATGC GCGCGAAACGCTGGGGATGACGGAGCGCTCGCCCGATCCTTGCTGGATGC TGGTGCTGCTACTGATATTCTCGACAGGGCCGGAAGATCCCCTCTCCACT GGGCGTGCACCCGAGGGAACACGGCCGTCGCCGTGGCGCTCCTCGACGCC GGCGCCGACGGCCTCGCCCGCGACGGCGCCGGAAAAACTCCCCTCCACTG TGCCGCCCAAGTAGGACACACCCCCATCGTCCAGGCGTTGCTCGACAGCT ACGGCTTCGGCTCCGCGCCCGACGGGTTGGCAGCGGCAGCACTTCGCGCG CCGCCGCCGCCGCCGCCGCCGCCGGCCTCTCAGGCGGCCGTTGTCGAGAA GGCATCTCCGTTCGCGATGCACTATGACGAGAGCATGTTGTCGATTGTGG ATGCCCGGAATGCCTACGGCAGCACGGCGCTGCACCGAGCGGCGTTCAAC GGTCGGGACGGTGTGGTCCTGGCGCTACTGCGGGGCGGGGCCGGCGTGTC CGTCGTCGGAAGAAGCGGGAGGCCGGAAGATCCCCTCTCCACTGGGCGTG CACCCGAGGGAACACGGCCGTCGCCGTGGCGCTCCTCGACGCCGGCGCCG ACGGCCTCGCCCGCGACGGCGCCGGAAAAACTCCCCTCCACTGTGCCGCC CAAGTAGGACACACCCCCATCGTCCAGGCGTTGCTCGACAGCTACGGCTT CGGCTCCGCGCCCGACGGGTTGGCAGCGGCAGCACTTCGCGCGCCGCCGC CGCCGCCGCCGCCGCCGGCCTCTCAGGCGGCCGTTGTCGAGAAGGCATCT CCGTTCGCGATGCACTATGACGAGAGCATGTTGTCGATTGTGGATGCCCG GAATGCCTACGGCAGCACGGCGCTGCACCGAGCGGCGTTCAACGGTCGGG ACGGTGTGGTCCTGGCGCTACTGCGGGGCGGGGCCGGCGTGTCCGTCGTC GGAAGAAGCGGGAGGAGCGCGCTCCACCTCGCGTGCCAAAACGCCCACCC TGCCTGTGTCGGGATCCTCCTCGCCTGGGGCGCCGACGAATCCGCCAGGG CGAACGACGGCTCCACCCCGTGGACCGAGCTCGCGCACGCCGCCGAGATC CGCCCCGCCGGCTGCCCGCGCGTCGCCGAGACGGCCCGCCTGCTCAACGC CGCCCGCGGCTCTCGCGCGTGGGGCCGGCGAGGCTGGCTGCTGATGCTCA AGGACGAGCACAACCGACAGATGGAGCGCGCTCCACCTCGCGTGCCAAAA CGCCCACCCTGCCTGTGTCGGGATCCTCCTCGCCTGGGGCGCCGACGAAT CCGCCAGGGCGAACGACGGCTCCACCCCGTGGACCGAGCTCGCGCACGCC GCCGAGATCCGCCCCGCCGGCTGCCCGCGCGTCGCCGAGACGGCCCGCCT GCTCAACGCCGCCCGCGGCTCTCGCGCGTGGGGCCGGCGAGGCTGGCTGC TGATGCTCAAGGACGAGCACAACCGACAGATGGTGGAGGTCGGCGAGGAG GGTGACGATGGGGATGGGGTGTGCGCAGATCTGGCGGGGCTGGTGGGCCA GCTGTTGGCCGTGGGCGAGGAAGGGTGCTTCCGCATGGTGGTTGGTTTCC TTTAAGTGGAGGTCGGCGAGGAGGGTGACGATGGGGATGGGGTGTGCGCA GATCTGGCGGGGCTGGTGGGCCAGCTGTTGGCCGTGGGCGAGGAAGGGTG CTTCCGCATGGTGGTTGGTTTCCTTTAA back to top
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