mRNA_S-firma_F_contig10689.930.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10689.930.1
Unique NamemRNA_S-firma_F_contig10689.930.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10689.930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10689contigS-firma_F_contig10689:1170..1734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size565
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10689.930.1prot_S-firma_F_contig10689.930.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10689 1279..1608 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.2617514-UTR-S-firma_F_contig10689:1169..12781622815608.2617514-UTR-S-firma_F_contig10689:1169..1278Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10689 1170..1278 +
1696949450.6903381-UTR-S-firma_F_contig10689:1169..12781696949450.6903381-UTR-S-firma_F_contig10689:1169..1278Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10689 1170..1278 +
1622815608.2884488-UTR-S-firma_F_contig10689:1608..17341622815608.2884488-UTR-S-firma_F_contig10689:1608..1734Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10689 1609..1734 +
1696949450.7142866-UTR-S-firma_F_contig10689:1608..17341696949450.7142866-UTR-S-firma_F_contig10689:1608..1734Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10689 1609..1734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.2721708-CDS-S-firma_F_contig10689:1278..16081622815608.2721708-CDS-S-firma_F_contig10689:1278..1608Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10689 1279..1608 +
1696949450.7018392-CDS-S-firma_F_contig10689:1278..16081696949450.7018392-CDS-S-firma_F_contig10689:1278..1608Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10689 1279..1608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10689.930.1

>prot_S-firma_F_contig10689.930.1 ID=prot_S-firma_F_contig10689.930.1|Name=mRNA_S-firma_F_contig10689.930.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=110bp
MCLFSTFFPRLLFLCQGKGAGWDKKSEDTKLGLMLLRHTGYEAEEKEVCG
GGVCASYLVVSPSFRLFVCVSDVYVPAPISASSVSILVWCCWAGEAIGAS
WMDGWVAMV*
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mRNA from alignment at S-firma_F_contig10689:1170..1734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10689.930.1 ID=mRNA_S-firma_F_contig10689.930.1|Name=mRNA_S-firma_F_contig10689.930.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=565bp|location=Sequence derived from alignment at S-firma_F_contig10689:1170..1734+ (Sphaerotrichia firma ET2_F female)
CGCATCAAAGTGGGCGGGGTGGGCACGGAAGGGCGGGGAGGGAAGCTATT
TAGTGGAAACAGGCAGAGGTACAGGGGGCGTTTTAGTGAGGATCGGTTTA
CCCGGAGGTATGTGTCTATTTTCGACGTTCTTTCCACGGCTGCTGTTTCT
CTGTCAGGGAAAGGGGGCTGGGTGGGACAAGAAGAGTGAGGACACAAAGC
TCGGATTGATGCTGCTACGCCACACAGGATATGAGGCTGAGGAGAAGGAG
GTGTGCGGCGGGGGTGTCTGTGCTTCCTATCTTGTTGTGTCTCCGAGTTT
TCGGCTGTTTGTGTGTGTTTCTGACGTTTACGTGCCGGCACCAATCTCGG
CCTCGTCTGTGTCGATTTTGGTCTGGTGTTGCTGGGCGGGCGAGGCGATA
GGTGCTTCATGGATGGATGGGTGGGTGGCGATGGTATGACATGACACGGC
AACGGATTACGAAACACGAGCTTACACGATACGCGCGTGTTTTTTTTCGT
TTTTTCCTTGCCTATTTTGGTCTCGAGACAGAAGTGGTGTGGCATCCTCT
CTCGCTCCAACCGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10689:1170..1734+

>mRNA_S-firma_F_contig10689.930.1 ID=mRNA_S-firma_F_contig10689.930.1|Name=mRNA_S-firma_F_contig10689.930.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=660bp|location=Sequence derived from alignment at S-firma_F_contig10689:1170..1734+ (Sphaerotrichia firma ET2_F female)
ATGTGTCTATTTTCGACGTTCTTTCCACGGCTGCTGTTTCTCTGTCAGGG
AAAGGGGGCTGGGTGGGACAAGAAGAGTGAGGACACAAAGCTCGGATTGA
TGCTGCTACGCCACACAGGATATGAGGCTGAGGAGAAGGAGGTGTGCGGC
GGGGGTGTCTGTGCTTCCTATCTTGTTGTGTCTCCGAGTTTTCGGCTGTT
TGTGTGTGTTTCTGACGTTTACGTGCCGGCACCAATCTCGGCCTCGTCTG
TGTCGATTTTGGTCTGGTGTTGCTGGGCGGGCGAGGCGATAGGTGCTTCA
TGGATGGATGGGTGGGTGGCGATGGTATGAATGTGTCTATTTTCGACGTT
CTTTCCACGGCTGCTGTTTCTCTGTCAGGGAAAGGGGGCTGGGTGGGACA
AGAAGAGTGAGGACACAAAGCTCGGATTGATGCTGCTACGCCACACAGGA
TATGAGGCTGAGGAGAAGGAGGTGTGCGGCGGGGGTGTCTGTGCTTCCTA
TCTTGTTGTGTCTCCGAGTTTTCGGCTGTTTGTGTGTGTTTCTGACGTTT
ACGTGCCGGCACCAATCTCGGCCTCGTCTGTGTCGATTTTGGTCTGGTGT
TGCTGGGCGGGCGAGGCGATAGGTGCTTCATGGATGGATGGGTGGGTGGC
GATGGTATGA
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