mRNA_S-firma_F_contig10678.914.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10678.914.1
Unique NamemRNA_S-firma_F_contig10678.914.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Match: A0A6H5JH17_9PHAE (Clu domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH17_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.100e-27
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 2 
Query:   23 SGEGISTSGPATVKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWVYGEKGTGVYEDWLASQAGKPALFPGEWE 247
            SG+  + S PATVKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWV G KGTG Y +W+A+Q  +P L  G+WE
Sbjct:  614 SGDETAESAPATVKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWVRGAKGTGGYNEWMAAQVDEPVLTVGDWE 688
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BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Match: A0A836CKQ1_9STRA (Clustered mitochondria-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKQ1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.820e-13
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 2 
Query:   47 GPATVKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWVYGE----KGTGVYEDWLASQA 214
            G   V + GAVE+KGI G D R Y+++V R+TPRDANWV G+    KGTGVY DWLA+ A
Sbjct:  658 GDQEVSLCGAVELKGIEGYDARRYIMEVIRLTPRDANWVDGDGSEHKGTGVYTDWLAANA 717
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BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Match: A0A7S2S3S9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3S9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.520e-10
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 2 
Query:   50 PATVKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWVYGEKG-TGVYE 193
            P  V + GAVEMKGIVGSDGR Y+LDV R++PRDANWV    G TGV+E
Sbjct:  193 PGPVTVCGAVEMKGIVGSDGRKYVLDVVRLSPRDANWVPERLGGTGVWE 241
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BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Match: A0A7S2S3S6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3S6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.550e-10
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 2 
Query:   50 PATVKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWVYGEKG-TGVYE 193
            P  V + GAVEMKGIVGSDGR Y+LDV R++PRDANWV    G TGV+E
Sbjct:  827 PGPVTVCGAVEMKGIVGSDGRKYVLDVVRLSPRDANWVPERLGGTGVWE 875
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BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Match: A0A7S2A0T7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A0T7_TRICV)

HSP 1 Score: 62.0 bits (149), Expect = 1.510e-9
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 2 
Query:   65 ITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWV-YGEKGTGVYEDWLASQAGKPALFPGE 241
            I G VE KGI GSD R+YLLD++R+TPRDANWV + E GTG +E  L+S     AL  GE
Sbjct:    1 ICGPVEAKGIRGSDQRNYLLDLTRLTPRDANWVPFSEGGTGKWEALLSSNG---ALANGE 57
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BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Match: A0A7S2UTK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTK2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.600e-9
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 2 
Query:   56 TVKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWVYGEKG-TGVYEDWLASQAG 217
            TV ++ AVE+K I G+DGR+YLLDV R+TPRD NW+    G TGVY D   ++ G
Sbjct:    9 TVALSSAVELKSIAGTDGRTYLLDVVRITPRDPNWLPASLGGTGVYGDRWEAKPG 63
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BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Match: A0A7S1BUY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BUY1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.120e-9
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 2 
Query:   26 GEGISTSGPAT-VKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWVYGEKG-TGVYEDWLASQAGK 220
            GE  S   PAT V+I G +E KGIVG D R+Y+LDV+RVTPRDANWV    G TG    W A++ G+
Sbjct:  125 GEKASARPPATTVEICGPLEAKGIVGVDDRNYVLDVTRVTPRDANWVPAAAGGTGC---WEAAEEGQ 188
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BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Match: B8C3Q5_THAPS (Clu domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Q5_THAPS)

HSP 1 Score: 61.6 bits (148), Expect = 8.880e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 2 
Query:   56 TVKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWVY-GEKGTGVYED 196
            T+K  G  EMKGI+GSD R Y+LD +R+TPRDANWV     GTGV++D
Sbjct:  851 TIKSCGPTEMKGILGSDKRRYVLDCTRLTPRDANWVSKASGGTGVFDD 898
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BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Match: A0A7S2M532_9STRA (Hypothetical protein n=3 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M532_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.260e-8
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:   47 GPATVKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWVYGEKG-TGVYE 193
            G  TV+  G +EMK I+GSD R YLLD +R+TPRDANW+  E G TG+ E
Sbjct:  873 GTKTVEFCGPIEMKAILGSDKRKYLLDCTRLTPRDANWISKENGGTGLLE 922
[Close]
BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Match: A0A7S2D7Q1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D7Q1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.270e-8
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:   59 VKITGAVEMKGIVGSDGRSYLLDVSRVTPRDANWV-YGEKGTGVYED 196
            V I  AVE+KGI GSDGR Y LD+ R+TPRDANW+     GTGV+E+
Sbjct:  877 VGICNAVELKGICGSDGRKYALDILRLTPRDANWLPKASGGTGVFEE 923
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10678.914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH17_9PHAE1.100e-2773.33Clu domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CKQ1_9STRA7.820e-1358.33Clustered mitochondria-domain-containing protein n... [more]
A0A7S2S3S9_9STRA1.520e-1067.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2S3S6_9STRA1.550e-1067.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2A0T7_TRICV1.510e-958.33Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2UTK2_9STRA5.600e-954.55Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1BUY1_9STRA6.120e-955.22Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
B8C3Q5_THAPS8.880e-960.42Clu domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2M532_9STRA2.260e-858.00Hypothetical protein n=3 Tax=Skeletonema marinoi T... [more]
A0A7S2D7Q1_9STRA2.270e-861.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10678contigS-firma_F_contig10678:1889..3991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G8X4
PFAMsCLU,CLU_N,TPR_10,TPR_12,eIF3_p135
Max annot lvl2759|Eukaryota
KEGG koko:K03255
Evalue2.51e-21
EggNOG OGsKOG1839@1|root,KOG1839@2759|Eukaryota
Descriptionintracellular distribution of mitochondria
COG categoryS
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Exons4
Model size327
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10678.914.1prot_S-firma_F_contig10678.914.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10678 1948..3909 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.0881293-UTR-S-firma_F_contig10678:1888..19471622815607.0881293-UTR-S-firma_F_contig10678:1888..1947Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10678 1889..1947 -
1696949449.9667552-UTR-S-firma_F_contig10678:1888..19471696949449.9667552-UTR-S-firma_F_contig10678:1888..1947Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10678 1889..1947 -
1622815607.1610377-UTR-S-firma_F_contig10678:3909..39911622815607.1610377-UTR-S-firma_F_contig10678:3909..3991Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10678 3910..3991 -
1696949450.023115-UTR-S-firma_F_contig10678:3909..39911696949450.023115-UTR-S-firma_F_contig10678:3909..3991Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10678 3910..3991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.1008797-CDS-S-firma_F_contig10678:1947..19611622815607.1008797-CDS-S-firma_F_contig10678:1947..1961Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10678 1948..1961 -
1696949449.9789302-CDS-S-firma_F_contig10678:1947..19611696949449.9789302-CDS-S-firma_F_contig10678:1947..1961Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10678 1948..1961 -
1622815607.1129653-CDS-S-firma_F_contig10678:1999..20481622815607.1129653-CDS-S-firma_F_contig10678:1999..2048Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10678 2000..2048 -
1696949449.9939418-CDS-S-firma_F_contig10678:1999..20481696949449.9939418-CDS-S-firma_F_contig10678:1999..2048Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10678 2000..2048 -
1622815607.1333477-CDS-S-firma_F_contig10678:2746..28401622815607.1333477-CDS-S-firma_F_contig10678:2746..2840Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10678 2747..2840 -
1696949450.006315-CDS-S-firma_F_contig10678:2746..28401696949450.006315-CDS-S-firma_F_contig10678:2746..2840Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10678 2747..2840 -
1622815607.1471157-CDS-S-firma_F_contig10678:3880..39091622815607.1471157-CDS-S-firma_F_contig10678:3880..3909Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10678 3881..3909 -
1696949450.014624-CDS-S-firma_F_contig10678:3880..39091696949450.014624-CDS-S-firma_F_contig10678:3880..3909Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10678 3881..3909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10678.914.1

>prot_S-firma_F_contig10678.914.1 ID=prot_S-firma_F_contig10678.914.1|Name=mRNA_S-firma_F_contig10678.914.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=62bp
MKGIVGSDGRSYLLDVSRVTPRDANWVYGEKGTGVYEDWLASQAGKPALF
PGEWEGPRPRP*
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mRNA from alignment at S-firma_F_contig10678:1889..3991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10678.914.1 ID=mRNA_S-firma_F_contig10678.914.1|Name=mRNA_S-firma_F_contig10678.914.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2103bp|location=Sequence derived from alignment at S-firma_F_contig10678:1889..3991- (Sphaerotrichia firma ET2_F female)
GGGCACAGAGGTTCAGGGCACCTCAGGTGAGGGCATCAGCACCTCAGGTC
CCGCGACGGTCAAGATTACCGGGGCCGTGGAGATGAAGGGCATCGTCGGC
AGCGACGGCAGGTATGTACATGTGCAGTTCTATTTTGTTTGCCATCCAAC
ATTTGTTGCCATCCGGCGGCAGGTATGTGCATGTGCAGTGCTATTTTGCT
TGCCATCCGACAGTTGTTGCCATCCGACAGTTGTTGCCATCCGACGGGAG
GTATGTGCATGTGCAGTTCTATTTTGTTTGCCATCCAACATTTGTTGCCA
TCCGAAGGCAAGTATGTGCAGTACTACAATTTTTGGTTCGCCACCCGACA
ATTGTTGCCCTCCGACAACTGCAGATGTACAGTATCCAACGAAACCTACC
TTTACTCAGCATGTCTTTTACTCCTGTTTGACATGACGTGCTATTGATGC
ATACGGAGTTCATTGTTCGAAGGATAGGTATTTACACCCCGCGTAGATGG
CACAAACAGCAAACGCTACCGAACAAAGCGATAAAACGGCAAGGTGCAAC
GTGTGTACTGTTGATGGATCGGGCGGAAACCCCGTGCTTTTTAATAAGTT
TTCTACATTCGTTAGCCGTATACGTCCGTCCTGTGAATAAGTCGTTCCAG
CGGGACTGACTGTTGTATACACACGTACCCTCCCCGTCCCAGCCAACAGC
ACAAAATCCGCCATCCGTTAGATTTATTGGTTGTTTAGTTTCGTAGTTTG
CAAGGGGATATGTTACTCAGCGTATATGTGTTATCTTCCCTACGATCCAC
CGGAAGTGTATTTCGTCTTTCAGGTTTTCTCCCTGTGGTGTTGCTTTGTT
TGTTAGCGGAAGTTTTCATCCGCCTCTCTCTCTCTGTGGCTGCTGCTTGT
GGTGTTGGTTTGTTTGTTTGTGGAAGTTTTTCATCTGCCTCTCTCTCTGT
GGATGTTTCCTATCTGCCTTTTGTTTGTTTGTGGATGTTTTTCATCTGCC
TCCTTCTCTCTGTAGATGTTTTTCATCTGCCTCTCTCTCTCTGTCGTTTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTCTC
TCTCTCTGTGCATGTTGTTTATCTGCCTCTCTCTCTCTCTGTGCGTTCCA
GGTCGTACCTGCTGGATGTGTCTCGAGTAACCCCGCGCGACGCCAATTGG
GTTTACGGGGAAAAGGGAACCGGGGTCTACGAAGATTGGCTGGCGGTAAG
TGGACGCTGCGATGAAACGGTAGGGAGGTGGGGGGGGTGATGACAGTTTT
GGTCGTCGGGGTTGTCGGATGGCGTGTGTGCGTTTGTGTGTTTGTGGGTG
CATGTGTGTTTGTTTGTGTGTTTGTGTTGTATGTGTTTCTGTGTGTCTGT
GTGTGTGTGCGTGTGTTTGTGTTTGTGTGTGTTTGTATGTGTTTTTGTGT
GTGTTTGTGTGTGTGTGTGTGTGTTGGAGGTTTTCGCTTGTTTGGGTGAG
TTCGGTTCAGTCGACCCACGCGACGCAAAAATCCTCACTACAAGAACTGC
TGTTTCTGTTTTTTTTTTGTTCTTTTTTGTTGCCTGGCCTACGCAAGCTT
GATTTTTTTTGTGTTGCTTTTGCGCCGGCTGGCAACAGACGAGTGGCAAA
CTAAAATGCAGAGTTCCCCTTTGAGTCCATCGCCTGACGAGGTGGGGTCG
TCTAGCTAGTCGTCGCAGTGGAGGATAGGATAGGAAAGGGGCCAGTGGGG
CAGACGACAGAATCCAACATTGGGAGGGAACAAAAAAAAATGACACTACA
TGACATGACTGCACAGGCCCAACGCATTTTTTCTCCTTCATCTATTGTTG
TTTCGTTTGCCATCCGACAATTGCTTTTTGTCTCCTCTTTTCGTTTTATC
ATATGCGTACACGTGAACCTGCAAACGAACGCCCTTTTTTCAGTCCCAAG
CGGGGAAGCCGGCACTCTTCCCCGGGGAGTGGGAGGGGCCCAGCATGGGG
GACGGAGAAGGGATGGGGGGAGTGGCCCAGGGCCGAGACCTTAGCTTCGA
GAGCATGGCGGTGCTGCGACCGGAGTTGCTGACCTCATTCGCGAGACACA
AGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10678:1889..3991-

>mRNA_S-firma_F_contig10678.914.1 ID=mRNA_S-firma_F_contig10678.914.1|Name=mRNA_S-firma_F_contig10678.914.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=372bp|location=Sequence derived from alignment at S-firma_F_contig10678:1889..3991- (Sphaerotrichia firma ET2_F female)
ATGAAGGGCATCGTCGGCAGCGACGGCAGATGAAGGGCATCGTCGGCAGC
GACGGCAGGTCGTACCTGCTGGATGTGTCTCGAGTAACCCCGCGCGACGC
CAATTGGGTTTACGGGGAAAAGGGAACCGGGGTCTACGAAGATTGGCTGG
CGGTCGTACCTGCTGGATGTGTCTCGAGTAACCCCGCGCGACGCCAATTG
GGTTTACGGGGAAAAGGGAACCGGGGTCTACGAAGATTGGCTGGCGTCCC
AAGCGGGGAAGCCGGCACTCTTCCCCGGGGAGTGGGAGGGGCCCATCCCA
AGCGGGGAAGCCGGCACTCTTCCCCGGGGAGTGGGAGGGGCCCAGGCCGA
GACCTTAGGGCCGAGACCTTAG
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