mRNA_S-firma_F_contig1066.897.1 (mRNA) Sphaerotrichia firma ET2_F female
|
Overview
Homology
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Match: D8LCY2_ECTSI (Holliday junction resolvase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY2_ECTSI) HSP 1 Score: 248 bits (632), Expect = 5.880e-77 Identity = 122/144 (84.72%), Postives = 135/144 (93.75%), Query Frame = 2
Query: 170 SFGVAISDETRTIAVPLTRVPRRDSTKKLDPSVVLGKLREIIEESSACGLVVGWPLAKSGRAEGQCLMVLQFLRQLHLKGNVDIPVTLCDERLTSVEARGILKDGGMGRKIAEREDETAAMVILQGFLDSAEAEDGRLSTLPTG 601
+FGVA+SDET+T+A PLTRVPRR STKKLDP++V+GKLREI+E+ SACGLVVGWPL+KSGRAEGQCLMVLQFLRQLHL+G VDIPVTL DER+TSVEARGILKD G+GRKIAEREDETAAMVILQGFLDSAEA G LSTLPTG
Sbjct: 109 NFGVAVSDETKTLAFPLTRVPRRQSTKKLDPALVIGKLREIVEDCSACGLVVGWPLSKSGRAEGQCLMVLQFLRQLHLRGKVDIPVTLFDERMTSVEARGILKDDGLGRKIAEREDETAAMVILQGFLDSAEAVHGGLSTLPTG 252
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Match: A0A2V7Y3Y4_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7Y3Y4_9BACT) HSP 1 Score: 79.3 bits (194), Expect = 4.440e-14 Identity = 54/133 (40.60%), Postives = 74/133 (55.64%), Query Frame = 2
Query: 173 FGVAISDETRTIAVPLTRVPRRDSTKKLDPSVVLGKLREIIEESSACGLVVGWPLAKSGRAEGQCLMVLQFLRQLHLKGNVDIPVTLCDERLTSVEARGILKDGGMGRKIAERE-DETAAMVILQGFLDSAEA 568
GVA+SDET T+A PLT + R K +V L E++ +VVG PL G Q VL F+ L + + +PV DERLT+VEA G L++ G+G + +R D+TAA+VILQ +LD A
Sbjct: 18 IGVALSDETATLASPLTTLTRGGVRKDTAAAVDLAHRHEVV------AVVVGLPLNMDGTRGPQAEKVLAFVEALRRR--LHVPVLPRDERLTTVEAEGRLREAGLGWRERKRVIDQTAAVVILQEYLDQRAA 142
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Match: A0A832HRI4_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A832HRI4_9BACT) HSP 1 Score: 75.5 bits (184), Expect = 7.610e-13 Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 2
Query: 173 FGVAISDETRTIAVPLTRVPRRDSTKKLDPSV-VLGKLREIIEESSACGLVVGWPLAKSGRAEGQCLMVLQFLRQLHLKGNVDIPVTLCDERLTSVEARGILKDGGMGR-KIAEREDETAAMVILQGFLDSAE 565
GVA+SDE++ +A+PL +P DP VL +LRE+I E ++VG P G V F+ L K + +P+ DERLT+V+A L++ G R K +R D+TAA ++LQ +LDS E
Sbjct: 13 IGVAVSDESKLLALPLEYIPA-------DPFANVLARLRELIREKEIGLILVGMPRNMDGSYGPAAQKVQAFVAAL--KEAIPMPIQTWDERLTTVQANRFLREAGYRRQKQRQRVDQTAAAILLQSYLDSLE 136
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Match: A0A097AR94_THEKI (Putative pre-16S rRNA nuclease n=1 Tax=Thermoanaerobacter kivui TaxID=2325 RepID=A0A097AR94_THEKI) HSP 1 Score: 74.7 bits (182), Expect = 1.460e-12 Identity = 53/136 (38.97%), Postives = 78/136 (57.35%), Query Frame = 2
Query: 170 SFGVAISDETRTIAVPLTRVPRRDSTKKLDPSVVLGKLREIIEESSACGLVVGWPLAKSGRAEGQCLMVLQFLRQLHLKGNVDIPVTLCDERLTSVEA-RGILKDGGMGRKIAERE-DETAAMVILQGFLDSAEAE 571
+ GVAISD TIA LT + R + K L+ +++EI+ + ++VG P G Q VL+F LK N +IPV L DERLT+VEA R +++ + RK ++ D+ AA++ILQG+LDS + E
Sbjct: 12 TIGVAISDPLGTIAQGLTTIKRNSNQKDLE------RIKEIVNQYKVEIIIVGLPKNMDGSIGPQGQKVLKFAD--FLKENFEIPVMLWDERLTTVEAERVLIEKANVSRKKRKKVIDKLAAVLILQGYLDSKKIE 139
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Match: A0A7C5FTG0_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C5FTG0_9BACT) HSP 1 Score: 74.3 bits (181), Expect = 2.210e-12 Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 2
Query: 170 SFGVAISDETRTIAVPLTRVPRRDSTKKLDPSVVLGKLREIIEESSACGLVVGWPLAKSGRAEGQCLMVLQFLRQLHLKGNVDIPVTLCDERLTSVEARGILKDGGMGRKIAERE-DETAAMVILQGFLDSAEAE 571
+ GVAISDET ++A+P + R +S KK L ++ ++ E +VVG P+ G Q V F +L + + +PV DERLT+VEA L D G +K + D AA ++LQG+L+S+ E
Sbjct: 12 TIGVAISDETASVALPFGTIRRTESEKK-----DLAEVANLVAEHGVSKVVVGLPVMLRGEESVQARKVRAFAEKLARR--IKVPVVFWDERLTTVEATKTLADSGFRKKHRKDVVDAVAASLVLQGYLESSRKE 139
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Match: A0A832HKX9_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A832HKX9_9BACT) HSP 1 Score: 73.9 bits (180), Expect = 2.890e-12 Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 2
Query: 176 GVAISDETRTIAVPLTRVPRRDSTKKLDPSVVLGKLREIIEESSACGLVVGWPLAKSGRAEGQCLMVLQFLRQLHLKGNVDIPVTLCDERLTSVEARGILKDGGMG-RKIAEREDETAAMVILQGFLDSAEAEDG 577
GVAISDET +IA P+ +P PS +L ++R+++ E ++VG P G V +F++ L K + +PV DERLT+V+A L++ + +K ER D+ AA ++LQ +LDS E G
Sbjct: 14 GVAISDETLSIAQPVEYIPAEP------PSGLLERIRQLVREREVGLVLVGMPRNMDGSYGPAAAAVQEFVQSL--KSALSVPVKTWDERLTTVQANRYLREANVRHKKSRERVDKIAAAILLQSYLDSREPGAG 140
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Match: A0A843S006_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Luteitalea sp. TaxID=2004800 RepID=A0A843S006_9BACT) HSP 1 Score: 73.2 bits (178), Expect = 5.280e-12 Identity = 54/128 (42.19%), Postives = 67/128 (52.34%), Query Frame = 2
Query: 176 GVAISDETRTIAVPLTRVPRRDSTKKLDPSVVLGKLREIIEESSACGLVVGWPLAKSGRAEGQCLMVLQFLRQLHLKGNVDIPVTLCDERLTSVEARGILKDGGMG-RKIAEREDETAAMVILQGFLD 556
GVAISD + TIA PL + P VV R I EE +VVG PL +G Q VL+F+ +L +G V +P+ LC ERLTSVEA +L R+ R D AA VILQ +LD
Sbjct: 15 GVAISDPSGTIARPLVVLHGNAL-----PQVVALVARLIGEEEGLTTIVVGLPLRLNGSPNDQTARVLKFVAEL--RGQVSVPIALCGERLTSVEAESLLAQREKDWRRRKARLDAAAAAVILQEYLD 135
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Match: A0A6L7LCV2_9CHLR (Putative pre-16S rRNA nuclease n=3 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6L7LCV2_9CHLR) HSP 1 Score: 72.4 bits (176), Expect = 8.990e-12 Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 2
Query: 173 FGVAISDETRTIAVPLTRVPRRDSTKKLDPSVVLGKLREIIEESSACGLVVGWPLAKSGRAEGQCLMVLQFLRQLHLKGNVDIPVTLCDERLTSVEARGILKDGGMGRKIAERE--DETAAMVILQGFLD 556
G+A+SD T +A P V R S L + I EE+ +VVG PL+ SG + Q V F+R+L + + D+P+ DERL++V+A+G+L+ G R+ ++ D AA VILQ +LD
Sbjct: 13 IGLALSDPTGFLASPFGFVDRGPSD--------LADITRIAEENEVAEIVVGLPLSMSGDSGAQAGKVRGFIREL--RSHTDLPIKTVDERLSTVQAQGMLRQSGRRRRDRDKGQLDAAAAAVILQAYLD 132
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Match: UPI001B8D131B (Holliday junction resolvase RuvX n=1 Tax=Leptolyngbya sp. 7M TaxID=2812896 RepID=UPI001B8D131B) HSP 1 Score: 73.2 bits (178), Expect = 9.010e-12 Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 2
Query: 176 GVAISDETRTIAVPLTRVPRRDSTKKLDPSVVLGKLREIIEESSACGLVVGWPLAKSGRAEGQCLMVLQFLRQLHLKGNVDIPVTLCDERLTSVEARGILKDGGMG-RKIAEREDETAAMVILQGFLDSAEAE 571
GVA+SDE++TIA P+ R+ R S K L L +++I+ E A LV+G PLA G R+L L +++I V L DER+TS EA+ L + G+ R+ +R D AA +IL FL + E +
Sbjct: 36 GVAVSDESQTIARPIRRL-ERTSWKNL-----LADIKDIVREFDAVALVIGLPLASDGTESEMSAEARDMARKLEL--SLEIAVFLQDERVTSYEAKAKLWERGISLRETRDRVDSEAAALILTDFLTAVEQD 160
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Match: A0A3D0NZN4_9BACT (Putative pre-16S rRNA nuclease n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A3D0NZN4_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 9.320e-12 Identity = 53/133 (39.85%), Postives = 71/133 (53.38%), Query Frame = 2
Query: 176 GVAISDETRTIAVPLTRVPRRDSTKKLDPSVVLGKLREIIEESSACGLVVGWPLAKSGRAEGQCLMVLQFLRQLHLKGNVDIPVTLCDERLTSVEARGILKDGGMGRKIAER-EDETAAMVILQGFLDSAEAE 571
GVAISDET+T+A PL R+ R S K+L L K+R I+ E A GLV+G PL G R+ L ++DIPV + DER+TS A+ L + G + + R D AA +IL L+ AE
Sbjct: 53 GVAISDETQTVARPLERI-ERTSWKRL-----LEKVRTIVSEFDAVGLVIGLPLESDGTESPMSAEARDMARKFSL--SLDIPVVVEDERVTSYAAKSRLWERGFSIEESRRLVDSEAAAIILSDVLERLRAE 177 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1066.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1066.897.1 >prot_S-firma_F_contig1066.897.1 ID=prot_S-firma_F_contig1066.897.1|Name=mRNA_S-firma_F_contig1066.897.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=85bp MVLQFLRQLHLKGNVDIPVTLCDERLTSVEARGILKDGGMGRKIAEREDEback to top mRNA from alignment at S-firma_F_contig1066:21392..24230- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1066.897.1 ID=mRNA_S-firma_F_contig1066.897.1|Name=mRNA_S-firma_F_contig1066.897.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2839bp|location=Sequence derived from alignment at S-firma_F_contig1066:21392..24230- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1066:21392..24230- >mRNA_S-firma_F_contig1066.897.1 ID=mRNA_S-firma_F_contig1066.897.1|Name=mRNA_S-firma_F_contig1066.897.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=510bp|location=Sequence derived from alignment at S-firma_F_contig1066:21392..24230- (Sphaerotrichia firma ET2_F female)back to top |