mRNA_S-firma_F_contig10657.890.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10657.890.1
Unique NamemRNA_S-firma_F_contig10657.890.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10657.890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10657contigS-firma_F_contig10657:1716..2369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog37919.EP51_16410
PFAMsGlu_cyclase_2
Max annot lvl201174|Actinobacteria
KEGG koko:K00683
Evalue1.58e-05
EggNOG OGsCOG3823@1|root,COG3823@2|Bacteria,2GMGV@201174|Actinobacteria,4FUEC@85025|Nocardiaceae
EC2.3.2.5
DescriptionGlutamine cyclotransferase
COG categoryO
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size654
Cds size654
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.6886444-CDS-S-firma_F_contig10657:1715..23691622815604.6886444-CDS-S-firma_F_contig10657:1715..2369Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10657 1716..2369 +
1696949448.3331778-CDS-S-firma_F_contig10657:1715..23691696949448.3331778-CDS-S-firma_F_contig10657:1715..2369Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10657 1716..2369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10657.890.1prot_S-firma_F_contig10657.890.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10657 1716..2369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10657.890.1

>prot_S-firma_F_contig10657.890.1 ID=prot_S-firma_F_contig10657.890.1|Name=mRNA_S-firma_F_contig10657.890.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=218bp
MPPRTFLEGATAAYGRVFSLSYTDCVVRVFPGGQPASHTPEAQFPLRHRP
NSGECWGLAFDPATEVFFVSDGSDTIYVYDRRLDAKPVPVLVSSKFPGRP
PQDGLPGLRLNELEWLPDGTLLAVVDGTEFMVRMVLRAVPPEVPTAEIIQ
WIQVQGGLVAPDEGAAPPGPPPCAVAGDLRKEGAAGDMNGLAVLPRGKGE
GPIRVLVTGKRWARMYVV
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mRNA from alignment at S-firma_F_contig10657:1716..2369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10657.890.1 ID=mRNA_S-firma_F_contig10657.890.1|Name=mRNA_S-firma_F_contig10657.890.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=654bp|location=Sequence derived from alignment at S-firma_F_contig10657:1716..2369+ (Sphaerotrichia firma ET2_F female)
ATGCCGCCACGGACGTTCTTGGAGGGCGCCACCGCGGCGTATGGCCGCGT
GTTTTCCCTGTCGTACACAGACTGCGTGGTGCGGGTGTTCCCCGGCGGGC
AGCCGGCGTCGCACACGCCGGAGGCTCAGTTCCCCCTCCGCCACCGCCCA
AACTCGGGGGAGTGCTGGGGGCTGGCGTTTGACCCCGCTACGGAGGTGTT
CTTTGTGTCTGACGGCTCGGACACGATTTACGTGTACGACCGCCGCCTTG
ACGCCAAGCCCGTCCCCGTCCTGGTGTCCTCCAAGTTCCCCGGGAGGCCG
CCCCAGGACGGCCTCCCTGGCCTCCGCCTCAACGAACTGGAGTGGCTGCC
GGACGGCACCCTGCTGGCGGTGGTGGACGGCACGGAGTTCATGGTGCGGA
TGGTGCTGCGGGCGGTGCCGCCGGAGGTGCCCACCGCGGAAATCATTCAG
TGGATTCAGGTGCAAGGTGGCTTGGTGGCGCCGGATGAGGGGGCGGCGCC
CCCAGGCCCCCCCCCCTGCGCCGTCGCCGGCGACCTCCGCAAGGAGGGCG
CGGCCGGGGACATGAACGGCCTAGCGGTGCTGCCTCGGGGGAAGGGGGAG
GGCCCCATCCGGGTGCTGGTCACGGGGAAGCGGTGGGCCCGCATGTATGT
CGTC
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Coding sequence (CDS) from alignment at S-firma_F_contig10657:1716..2369+

>mRNA_S-firma_F_contig10657.890.1 ID=mRNA_S-firma_F_contig10657.890.1|Name=mRNA_S-firma_F_contig10657.890.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1308bp|location=Sequence derived from alignment at S-firma_F_contig10657:1716..2369+ (Sphaerotrichia firma ET2_F female)
ATGCCGCCACGGACGTTCTTGGAGGGCGCCACCGCGGCGTATGGCCGCGT
GTTTTCCCTGTCGTACACAGACTGCGTGGTGCGGGTGTTCCCCGGCGGGC
AGCCGGCGTCGCACACGCCGGAGGCTCAGTTCCCCCTCCGCCACCGCCCA
AACTCGGGGGAGTGCTGGGGGCTGGCGTTTGACCCCGCTACGGAGGTGTT
CTTTGTGTCTGACGGCTCGGACACGATTTACGTGTACGACCGCCGCCTTG
ACGCCAAGCCCGTCCCCGTCCTGGTGTCCTCCAAGTTCCCCGGGAGGCCG
CCCCAGGACGGCCTCCCTGGCCTCCGCCTCAACGAACTGGAGTGGCTGCC
GGACGGCACCCTGCTGGCGGTGGTGGACGGCACGGAGTTCATGGTGCGGA
TGGTGCTGCGGGCGGTGCCGCCGGAGGTGCCCACCGCGGAAATCATTCAG
TGGATTCAGGTGCAAGGTGGCTTGGTGGCGCCGGATGAGGGGGCGGCGCC
CCCAGGCCCCCCCCCCTGCGCCGTCGCCGGCGACCTCCGCAAGGAGGGCG
CGGCCGGGGACATGAACGGCCTAGCGGTGCTGCCTCGGGGGAAGGGGGAG
GGCCCCATCCGGGTGCTGGTCACGGGGAAGCGGTGGGCCCGCATGTATGT
CGTCATGCCGCCACGGACGTTCTTGGAGGGCGCCACCGCGGCGTATGGCC
GCGTGTTTTCCCTGTCGTACACAGACTGCGTGGTGCGGGTGTTCCCCGGC
GGGCAGCCGGCGTCGCACACGCCGGAGGCTCAGTTCCCCCTCCGCCACCG
CCCAAACTCGGGGGAGTGCTGGGGGCTGGCGTTTGACCCCGCTACGGAGG
TGTTCTTTGTGTCTGACGGCTCGGACACGATTTACGTGTACGACCGCCGC
CTTGACGCCAAGCCCGTCCCCGTCCTGGTGTCCTCCAAGTTCCCCGGGAG
GCCGCCCCAGGACGGCCTCCCTGGCCTCCGCCTCAACGAACTGGAGTGGC
TGCCGGACGGCACCCTGCTGGCGGTGGTGGACGGCACGGAGTTCATGGTG
CGGATGGTGCTGCGGGCGGTGCCGCCGGAGGTGCCCACCGCGGAAATCAT
TCAGTGGATTCAGGTGCAAGGTGGCTTGGTGGCGCCGGATGAGGGGGCGG
CGCCCCCAGGCCCCCCCCCCTGCGCCGTCGCCGGCGACCTCCGCAAGGAG
GGCGCGGCCGGGGACATGAACGGCCTAGCGGTGCTGCCTCGGGGGAAGGG
GGAGGGCCCCATCCGGGTGCTGGTCACGGGGAAGCGGTGGGCCCGCATGT
ATGTCGTC
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