mRNA_S-firma_F_contig10652.884.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10652.884.1
Unique NamemRNA_S-firma_F_contig10652.884.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10652.884.1 vs. uniprot
Match: UPI0015B107A5 (neuroblastoma-amplified sequence-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015B107A5)

HSP 1 Score: 67.8 bits (164), Expect = 3.170e-8
Identity = 94/428 (21.96%), Postives = 161/428 (37.62%), Query Frame = 1 
Query:  355 FAAAGRFHAVAVMFSRYGEALAPVRLGVLDSIPETADPHGYEDLLPAAGDD------------------------LTPAPAA---------------------------ISWYCARVRALDALAGQLKHATTLAYLGVTRMGGGDGTAPLATLFDAVTQLRRLVYDCGMDALMDLDTWEATPLQGKVAAMLDGVGAGDVVAAVRGRVLPYMAAVGGSSGEWVPLLHHHLVGVAARMDGLGTVLPVVAA-----CRPSLPR---DERDIIPDLVDVTKLVLAACYASPGSDR-AHSDLVWQLIECLPVSSSQAAQADPRLMAELAH-VDRLEGHLACCEALSKYGMAPALRFFND--CEAESF--------RGGARREAAPQDDADLEALWVDVLKDMLAVQRRGFSWVAPAFCYRVALSGMLAAGRSQ 1425
            FA    + AVA +F+  G    P RL +L + PET  P  Y+ LLP   +                         +T  P +                             W+  R + ++  +G + +A  L  LG+ R   G     L  LFD +T L  L+YDC ++  + L  ++      KV  ++      D V  V   + P++                H  G A  +  L T L  ++      C+  L     D   +I D+ ++  L L   Y    SD+  ++  + +L   LP    Q ++  P+    + + ++ L+ H++ CE L + G+A  L    +  C +E          R  + R     DD      W+ +L D+L  Q+  F  V+   CY + L  +L +G+ +
Sbjct:  730 FACNSNWEAVATLFTYNGSETLPHRLNILSNFPETVPPLEYQSLLPLFNEQELIFYPWDEHQLREPDWCETKYQRITNIPCSEDYVEEFYEKYKDLVKYREVSLSEVLVTEWFIRRAKEIEDRSGLVDNALELVRLGIQRNIRG-----LEKLFDDLTTLEVLIYDCLINKDLSLKEYQELTEFEKVQLLMSTTSEEDFVKHVEQWLFPFLERC-----------DKHDPGCAKSL--LKTYLMYLSKNSLIYCKKLLENYKFDTHTVISDVNELICLGLHCIYYCERSDQLTNAKSMHELFLSLP---DQVSKNTPKQFHSVPNGIENLQKHISVCELLDRNGLAVTLAIVQNISCNSEEVKKILTKLTRMASHRFPVLSDDE-----WIGLLSDVLETQQLLFKCVSQEDCYEIVLQSLLCSGKCE 1131
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BLAST of mRNA_S-firma_F_contig10652.884.1 vs. uniprot
Match: A0A146H5M1_MYCCL (Sec39 domain-containing protein n=2 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H5M1_MYCCL)

HSP 1 Score: 60.5 bits (145), Expect = 5.580e-6
Identity = 111/448 (24.78%), Postives = 167/448 (37.28%), Query Frame = 1 
Query:   37 MSVDAIGGCLAAVEDAEWVVGQACTRLPPSKAVADALFAHGVARAEAAV------AAGGGGAWAGAALDTLARYR------------DRLRTLVKIRLA------------EGDSPYEPTAFAALRD---------ADVTAAVRAFAAAGR-FHAVAVMFSRYGEALAPVRLGVLDSIPETADPHGYEDLLPAAGD-------------------------------------DLTPAPAAIS------WYCARVRALDALAGQLKHATTLAYLGVTRMGGGDGTAPLATLFDAVTQLRRLVYDC-----GMDALMDLDTWEATPLQGKVAAMLDGVGAGDVVAAVRGRVLPYMAAVGGSS---GEWVP-----LLHHHLVGVAARMDGLGTVLPVVAACRPSLPRDERDIIPDLVDVTKLVLAACYASPGSDRAHSDLVWQLIECLP 1092
            ++ D +   L  V+D  WV      R+     V   L   G+ R  AAV      AA G  A      D  A +R            DRL T V++  A            E D P+  +A   L D         AD         A+ + F AV ++F R+   L P R GVL+SIPE A+P  Y DLLPA                                        D+ P P A +      WY + +  + +  G +  A     L + +     G   L  + + ++ L RL+YD        D    L+ W A      V A L       V   +   V+PY+  V   +   G+  P     +L+ +++G+  +M        +  A +P LP+ +R II +  D+ +L L+  Y S GS  A   ++  + ECLP
Sbjct:   16 LTADGVRDVLGPVKDDVWVAAACADRVTDDTTVQRVLLELGLERTAAAVTRAQAAAADGKDALLAYFRDLPADFRLCSIRALLLRRLDRLNTFVELCKAAPADTQNPEDAWEEDDPWAESAEPRLADPPIPLSTFLADTLIRSTCLLASHQWFAAVKLVFDRHTVELWPYRFGVLESIPEHANPLSYRDLLPAVDASTGTERRFDSSPWRPEPDWTESADALAVLELSPEPDVDIAPRPDAAAADQLANWYKSHIDLIISTTGMVDVA-----LALVQHAASQGVPGLDEVGEDLSLLSRLIYDAIQGENDPDFDWTLERWRALEPLPVVKAYLQYSTPDTVAKDIWRLVMPYLFVVESRAERAGQPNPELRTSVLYDYILGIPLQM-----AASIFEASKPILPKAQR-IIQNDEDMARLALSCLYGS-GS-LAEWTVMSSIFECLP 450
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BLAST of mRNA_S-firma_F_contig10652.884.1 vs. uniprot
Match: A0A4D9DBV4_9STRA (Sec39 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBV4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.640e-5
Identity = 54/146 (36.99%), Postives = 68/146 (46.58%), Query Frame = 1 
Query:  916 LGTVLPVVAACRPSLPRDERDIIPDLVDVTKLVLAA------CYASPGSDRAHSDLVWQLIECLPVSSSQAAQADPRLMAELAHVDRLEGHLACCEALSKYGMAPAL----RFFNDCEAESFRGGARREAAPQDDADLEALWVDVL 1323
            L   + V  A +P+L   ER ++    D+ + VL        C   PG+     DL+W LIECLPV+S+ AA   P L AE   VD LE  L   + LS Y +A  L    RF  D    SF G   REA    D  +   W DVL
Sbjct: 1028 LRAAVAVAQASKPNLS-PERRVLQREADLFRFVLQCSRAHDDCLDPPGA----IDLLWSLIECLPVASAAAA---PELQAE---VDALEARLTVVQYLSNYSIALPLSVYERFQMDLAGGSFSGLEGREA----DFRVLGTWEDVL 1158
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10652.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI0015B107A53.170e-821.96neuroblastoma-amplified sequence-like n=1 Tax=Steg... [more]
A0A146H5M1_MYCCL5.580e-624.78Sec39 domain-containing protein n=2 Tax=Mycena chl... [more]
A0A4D9DBV4_9STRA4.640e-536.99Sec39 domain-containing protein n=1 Tax=Nannochlor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10652contigS-firma_F_contig10652:1859..3394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog554065.XP_005850685.1
PFAMsSec39
Max annot lvl3041|Chlorophyta
KEGG koko:K20473
Evalue9.1e-21
EggNOG OGsKOG1797@1|root,KOG1797@2759|Eukaryota,37PD8@33090|Viridiplantae,34I5H@3041|Chlorophyta
DescriptionSecretory pathway protein Sec39
COG categoryS
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size1425
Cds size1425
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.300614-CDS-S-firma_F_contig10652:1858..31271622815604.300614-CDS-S-firma_F_contig10652:1858..3127Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10652 1859..3127 +
1696949448.0701766-CDS-S-firma_F_contig10652:1858..31271696949448.0701766-CDS-S-firma_F_contig10652:1858..3127Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10652 1859..3127 +
1622815604.3163083-CDS-S-firma_F_contig10652:3238..33941622815604.3163083-CDS-S-firma_F_contig10652:3238..3394Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10652 3239..3394 +
1696949448.0877488-CDS-S-firma_F_contig10652:3238..33941696949448.0877488-CDS-S-firma_F_contig10652:3238..3394Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10652 3239..3394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10652.884.1prot_S-firma_F_contig10652.884.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10652 1859..3394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10652.884.1

>prot_S-firma_F_contig10652.884.1 ID=prot_S-firma_F_contig10652.884.1|Name=mRNA_S-firma_F_contig10652.884.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=475bp
EAIEKARWKEHPMSVDAIGGCLAAVEDAEWVVGQACTRLPPSKAVADALF
AHGVARAEAAVAAGGGGAWAGAALDTLARYRDRLRTLVKIRLAEGDSPYE
PTAFAALRDADVTAAVRAFAAAGRFHAVAVMFSRYGEALAPVRLGVLDSI
PETADPHGYEDLLPAAGDDLTPAPAAISWYCARVRALDALAGQLKHATTL
AYLGVTRMGGGDGTAPLATLFDAVTQLRRLVYDCGMDALMDLDTWEATPL
QGKVAAMLDGVGAGDVVAAVRGRVLPYMAAVGGSSGEWVPLLHHHLVGVA
ARMDGLGTVLPVVAACRPSLPRDERDIIPDLVDVTKLVLAACYASPGSDR
AHSDLVWQLIECLPVSSSQAAQADPRLMAELAHVDRLEGHLACCEALSKY
GMAPALRFFNDCEAESFRGGARREAAPQDDADLEALWVDVLKDMLAVQRR
GFSWVAPAFCYRVALSGMLAAGRSQ
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mRNA from alignment at S-firma_F_contig10652:1859..3394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10652.884.1 ID=mRNA_S-firma_F_contig10652.884.1|Name=mRNA_S-firma_F_contig10652.884.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1536bp|location=Sequence derived from alignment at S-firma_F_contig10652:1859..3394+ (Sphaerotrichia firma ET2_F female)
GAGGCCATTGAGAAGGCCCGGTGGAAGGAGCACCCTATGTCGGTGGACGC
CATCGGTGGCTGCCTGGCGGCAGTGGAGGACGCGGAGTGGGTGGTGGGGC
AGGCCTGCACCCGGCTGCCGCCGTCCAAGGCCGTCGCCGACGCCCTGTTT
GCCCACGGTGTGGCCCGGGCGGAGGCCGCCGTCGCCGCCGGCGGCGGCGG
GGCGTGGGCGGGCGCCGCCCTGGACACCCTCGCCCGCTACCGGGATCGCC
TCCGCACCCTGGTCAAAATCCGGCTCGCGGAGGGCGACTCCCCGTACGAG
CCGACGGCGTTTGCCGCCCTGCGGGACGCGGACGTGACAGCCGCCGTGCG
GGCCTTTGCCGCCGCCGGCCGCTTCCACGCCGTCGCCGTCATGTTCAGCC
GGTACGGGGAGGCGTTGGCGCCCGTGCGGCTGGGCGTCCTGGACTCCATC
CCGGAAACCGCGGACCCCCACGGGTACGAGGACCTCCTCCCCGCCGCCGG
CGACGACCTGACCCCCGCCCCCGCCGCCATTTCCTGGTACTGCGCCCGGG
TGCGGGCGCTGGACGCCCTGGCCGGCCAGCTGAAGCACGCCACCACCCTC
GCGTACCTGGGCGTGACCCGCATGGGGGGCGGCGACGGCACCGCCCCCCT
GGCCACCCTGTTTGACGCCGTCACCCAGCTGCGGCGCCTCGTGTACGACT
GCGGCATGGACGCCCTCATGGACCTGGACACGTGGGAGGCGACGCCCCTG
CAGGGCAAGGTGGCCGCCATGCTGGACGGCGTGGGGGCGGGCGACGTGGT
GGCCGCCGTCCGGGGGCGGGTCCTCCCGTACATGGCCGCCGTGGGGGGGT
CATCGGGGGAGTGGGTGCCGCTGCTGCACCACCACCTGGTGGGCGTCGCC
GCCCGCATGGACGGCCTGGGTACGGTGCTGCCCGTCGTGGCGGCCTGCCG
CCCCAGCCTGCCCCGCGACGAGCGCGACATCATCCCCGACCTGGTGGACG
TCACCAAGCTGGTGCTGGCGGCGTGCTACGCCAGCCCCGGCTCCGACCGC
GCCCACAGCGACCTCGTGTGGCAGCTCATTGAGTGCCTCCCCGTGTCGTC
GTCGCAGGCGGCGCAGGCCGACCCCCGCCTCATGGCGGAGCTGGCCCACG
TGGACCGCCTGGAGGGCCACCTGGCGTGCTGTGAGGCGCTGTCCAAGTAC
GGCATGGCGCCCGCGCTGCGCTTCTTCAACGACTGCGAGGCGGAGTCGTT
CCGGGGGGGCGCCCGCCGCGTCATGGACGCCGCCCTGGACGACGCCGAGC
TGGAGGACATGGTCGCCGGCGACGCCGCCCGCACCCTCCTCCTCCAAATG
GGCCGCCTGGGCGTCCTGCTGCGCGTCCAGGAGGCCGCCCCCCAGGACGA
CGCCGACCTGGAGGCCCTCTGGGTGGACGTCCTCAAGGACATGCTGGCCG
TCCAGCGGCGGGGCTTCTCCTGGGTGGCGCCCGCCTTTTGCTACCGGGTG
GCCCTCAGCGGCATGCTGGCCGCCGGCCGCAGCCAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10652:1859..3394+

>mRNA_S-firma_F_contig10652.884.1 ID=mRNA_S-firma_F_contig10652.884.1|Name=mRNA_S-firma_F_contig10652.884.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2850bp|location=Sequence derived from alignment at S-firma_F_contig10652:1859..3394+ (Sphaerotrichia firma ET2_F female)
GAGGCCATTGAGAAGGCCCGGTGGAAGGAGCACCCTATGTCGGTGGACGC
CATCGGTGGCTGCCTGGCGGCAGTGGAGGACGCGGAGTGGGTGGTGGGGC
AGGCCTGCACCCGGCTGCCGCCGTCCAAGGCCGTCGCCGACGCCCTGTTT
GCCCACGGTGTGGCCCGGGCGGAGGCCGCCGTCGCCGCCGGCGGCGGCGG
GGCGTGGGCGGGCGCCGCCCTGGACACCCTCGCCCGCTACCGGGATCGCC
TCCGCACCCTGGTCAAAATCCGGCTCGCGGAGGGCGACTCCCCGTACGAG
CCGACGGCGTTTGCCGCCCTGCGGGACGCGGACGTGACAGCCGCCGTGCG
GGCCTTTGCCGCCGCCGGCCGCTTCCACGCCGTCGCCGTCATGTTCAGCC
GGTACGGGGAGGCGTTGGCGCCCGTGCGGCTGGGCGTCCTGGACTCCATC
CCGGAAACCGCGGACCCCCACGGGTACGAGGACCTCCTCCCCGCCGCCGG
CGACGACCTGACCCCCGCCCCCGCCGCCATTTCCTGGTACTGCGCCCGGG
TGCGGGCGCTGGACGCCCTGGCCGGCCAGCTGAAGCACGCCACCACCCTC
GCGTACCTGGGCGTGACCCGCATGGGGGGCGGCGACGGCACCGCCCCCCT
GGCCACCCTGTTTGACGCCGTCACCCAGCTGCGGCGCCTCGTGTACGACT
GCGGCATGGACGCCCTCATGGACCTGGACACGTGGGAGGCGACGCCCCTG
CAGGGCAAGGTGGCCGCCATGCTGGACGGCGTGGGGGCGGGCGACGTGGT
GGCCGCCGTCCGGGGGCGGGTCCTCCCGTACATGGCCGCCGTGGGGGGGT
CATCGGGGGAGTGGGTGCCGCTGCTGCACCACCACCTGGTGGGCGTCGCC
GCCCGCATGGACGGCCTGGGTACGGTGCTGCCCGTCGTGGCGGCCTGCCG
CCCCAGCCTGCCCCGCGACGAGCGCGACATCATCCCCGACCTGGTGGACG
TCACCAAGCTGGTGCTGGCGGCGTGCTACGCCAGCCCCGGCTCCGACCGC
GCCCACAGCGACCTCGTGTGGCAGCTCATTGAGTGCCTCCCCGTGTCGTC
GTCGCAGGCGGCGCAGGCCGACCCCCGCCTCATGGCGGAGCTGGCCCACG
TGGACCGCCTGGAGGGCCACCTGGCGTGCTGTGAGGCGCTGTCCAAGTAC
GGCATGGCGCCCGCGCTGCGCTTCTTCAACGACTGCGAGGCGGAGTCGTT
CCGGGGGGGCGCCCGCCGCGAGGCCATTGAGAAGGCCCGGTGGAAGGAGC
ACCCTATGTCGGTGGACGCCATCGGTGGCTGCCTGGCGGCAGTGGAGGAC
GCGGAGTGGGTGGTGGGGCAGGCCTGCACCCGGCTGCCGCCGTCCAAGGC
CGTCGCCGACGCCCTGTTTGCCCACGGTGTGGCCCGGGCGGAGGCCGCCG
TCGCCGCCGGCGGCGGCGGGGCGTGGGCGGGCGCCGCCCTGGACACCCTC
GCCCGCTACCGGGATCGCCTCCGCACCCTGGTCAAAATCCGGCTCGCGGA
GGGCGACTCCCCGTACGAGCCGACGGCGTTTGCCGCCCTGCGGGACGCGG
ACGTGACAGCCGCCGTGCGGGCCTTTGCCGCCGCCGGCCGCTTCCACGCC
GTCGCCGTCATGTTCAGCCGGTACGGGGAGGCGTTGGCGCCCGTGCGGCT
GGGCGTCCTGGACTCCATCCCGGAAACCGCGGACCCCCACGGGTACGAGG
ACCTCCTCCCCGCCGCCGGCGACGACCTGACCCCCGCCCCCGCCGCCATT
TCCTGGTACTGCGCCCGGGTGCGGGCGCTGGACGCCCTGGCCGGCCAGCT
GAAGCACGCCACCACCCTCGCGTACCTGGGCGTGACCCGCATGGGGGGCG
GCGACGGCACCGCCCCCCTGGCCACCCTGTTTGACGCCGTCACCCAGCTG
CGGCGCCTCGTGTACGACTGCGGCATGGACGCCCTCATGGACCTGGACAC
GTGGGAGGCGACGCCCCTGCAGGGCAAGGTGGCCGCCATGCTGGACGGCG
TGGGGGCGGGCGACGTGGTGGCCGCCGTCCGGGGGCGGGTCCTCCCGTAC
ATGGCCGCCGTGGGGGGGTCATCGGGGGAGTGGGTGCCGCTGCTGCACCA
CCACCTGGTGGGCGTCGCCGCCCGCATGGACGGCCTGGGTACGGTGCTGC
CCGTCGTGGCGGCCTGCCGCCCCAGCCTGCCCCGCGACGAGCGCGACATC
ATCCCCGACCTGGTGGACGTCACCAAGCTGGTGCTGGCGGCGTGCTACGC
CAGCCCCGGCTCCGACCGCGCCCACAGCGACCTCGTGTGGCAGCTCATTG
AGTGCCTCCCCGTGTCGTCGTCGCAGGCGGCGCAGGCCGACCCCCGCCTC
ATGGCGGAGCTGGCCCACGTGGACCGCCTGGAGGGCCACCTGGCGTGCTG
TGAGGCGCTGTCCAAGTACGGCATGGCGCCCGCGCTGCGCTTCTTCAACG
ACTGCGAGGCGGAGTCGTTCCGGGGGGGCGCCCGCCGCGAGGCCGCCCCC
CAGGACGACGCCGACCTGGAGGCCCTCTGGGTGGACGTCCTCAAGGACAT
GCTGGCCGTCCAGCGGCGGGGCTTCTCCTGGGTGGCGCCCGCCTTTTGCT
ACCGGGTGGCCCTCAGCGGCATGCTGGCCGCCGGCCGCAGCCAGGAGGCC
GCCCCCCAGGACGACGCCGACCTGGAGGCCCTCTGGGTGGACGTCCTCAA
GGACATGCTGGCCGTCCAGCGGCGGGGCTTCTCCTGGGTGGCGCCCGCCT
TTTGCTACCGGGTGGCCCTCAGCGGCATGCTGGCCGCCGGCCGCAGCCAG
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