mRNA_S-firma_F_contig1065.881.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1065.881.1
Unique NamemRNA_S-firma_F_contig1065.881.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Match: D8LRP9_ECTSI (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP9_ECTSI)

HSP 1 Score: 541 bits (1393), Expect = 3.500e-188
Identity = 274/337 (81.31%), Postives = 293/337 (86.94%), Query Frame = 1
Query:   31 MREENGENAKVGNGDSEENGRRIHSSPAACYGSALISSKIPPRCRGKREAGADPGGGEGELEGGGGVILGIDEAGRGPVLGPMTYGAAYWSCADDQDVSAMGFDDSKALTPDQRTGLFDRIDATPQVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKEVKFVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSEDRGYGSGYPGDERCKKWLETNVDSVFGFPDICRFSWGTTKELLKGCAGKRVDWEEEPDEEAAGMKSITSFMVQPKKKARANLFVKRGLELVDTF 1041
            M E N +++  G  + +EN RR   SP AC+GSALISSKIPPRCRG              L+G GGVILGIDEAGRGPVLGPMTYGAAYWSCADD+++SA GFDDSKALT DQRT LFDRID TP+VGWVLRLISARELSDKMCRKVPYSLNVISHDAAAE+IRAVQARGVKVTQVYVDTVGDP  YQ+KLEKEFGK +KFVVAKKADSLYKT SAASIVAKVTRDRI+E W+WSEPNLDFSEDR YGSGYPGDE+CKKWLE+NVD VFGFPDICRFSWGTTKE+LKG   KRVDWEEEPDEEAAGM SI SFMVQPKKKARANLFVKRGLELVDTF
Sbjct:    1 MPEGNVQHSNDGGEEPKENARR---SPTACFGSALISSKIPPRCRG--------------LDGEGGVILGIDEAGRGPVLGPMTYGAAYWSCADDKEMSAKGFDDSKALTSDQRTSLFDRIDRTPEVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAELIRAVQARGVKVTQVYVDTVGDPAFYQSKLEKEFGKGIKFVVAKKADSLYKTASAASIVAKVTRDRIVEGWQWSEPNLDFSEDRKYGSGYPGDEKCKKWLESNVDPVFGFPDICRFSWGTTKEILKGPTRKRVDWEEEPDEEAAGMNSIASFMVQPKKKARANLFVKRGLELVDTF 320          
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Match: A0A6V1NB11_HETAK (Ribonuclease n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NB11_HETAK)

HSP 1 Score: 312 bits (799), Expect = 9.330e-99
Identity = 171/306 (55.88%), Postives = 211/306 (68.95%), Query Frame = 1
Query:  133 LISSKIPPRCRGKREAGADPGGGEGELEGGGGVILGIDEAGRGPVLGPMTYGAAYWSCADDQDVSAMGFDDSKALTPDQRTGLFDRIDATPQVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKEVKFVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSEDRGYGSGYPGDERCKKWLETNVDSVFGFPDICRFSWGTT-KELLKGCAGKRVDWEEEPDEEAAGMKSITSFMVQP--KKKARANLFVKRGLELVDTF 1041
            L  S +P  CR    +G       G  + G   ILGIDEAGRGPV+GPM YGAAYWS ADD+++SAMGFDDSKALT DQR  LFD+I  TP VGWV+R ISA E+S++M RKVP SLN+IS+ AA +MI+     GV +T+VYVDTVGDP  YQ +L + F   + F VAKKADSLYKTVSAASI AKVTRDR++E W + E    F+     GSGYP DE+C  WL  +VD VFGFP+I RFSWG   +E+L+  A  RV+W+E+ +    GM+SI  F+ QP  KK+ RA  F +RGLE+V  F
Sbjct:   10 LFKSPVPESCRTVLASG-------GFADKGPECILGIDEAGRGPVMGPMVYGAAYWSKADDEEISAMGFDDSKALTADQRASLFDKIKETPSVGWVIRSISAEEISNQMLRKVPVSLNIISYAAAMQMIQTALDDGVNITKVYVDTVGDPAAYQERLTRHFKGAIDFTVAKKADSLYKTVSAASICAKVTRDRLLEGWVFPEGPAGFAGGAAMGSGYPSDEKCVAWLRAHVDPVFGFPNIVRFSWGGAGREILEEKAA-RVEWDED-EGPPPGMQSIAGFL-QPANKKRRRAKYFHQRGLEVVHDF 305          
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Match: A0A835YL34_9STRA (Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL34_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.020e-88
Identity = 148/279 (53.05%), Postives = 188/279 (67.38%), Query Frame = 1
Query:  235 LGIDEAGRGPVLGPMTYGAAYWSCADDQDVSAMGFDDSKALTPDQRTGLFDRIDATPQVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKEVKFVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSED---RGYGSGYPGDERCKKWLETNVDSVFGFPDICRFSWGTTKELLKGCAGKRVDWEEEPDEEAAG-------MKSITSFMVQPKKKARANLFVKRGLELVDTF 1041
            +GIDEAGRGPVLGPMTYGAAYWS  DD+ +  +G+DDSKAL+ D+R  L+  I A  ++GWVLR++ ARELS +M R+ P+SLN ISH AAAEMIR    R V +T VYVDTVGDP  Y   L +EF   + F VAKKADSLYKTVSAASI AKV RDR + +WR+ EP + F+ D   R YGSGYPGD RC  WL ++VD++FGFPD+ RFSW T ++LL+  A K V+WEEE + +  G          + +F  +  +  R   F +  +E    F
Sbjct:    1 MGIDEAGRGPVLGPMTYGAAYWSMNDDEAIKKLGYDDSKALSEDKREKLYKGIMAEQRIGWVLRVLGARELSARMLRRAPHSLNAISHAAAAEMIRHALGRAVALTHVYVDTVGDPDNYARALRREFP-GIGFTVAKKADSLYKTVSAASICAKVVRDRALARWRYREPGV-FAGDAAARAYGSGYPGDARCSAWLRSHVDTIFGFPDVARFSWSTARDLLEAAAAK-VEWEEEEEGDVQGGFGGPQGAPKLDAFFTRSGQAPRTQYFKRARIERTYAF 276          
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Match: A0A5D6XNI5_9STRA (Ribonuclease n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNI5_9STRA)

HSP 1 Score: 283 bits (725), Expect = 1.150e-87
Identity = 155/279 (55.56%), Postives = 194/279 (69.53%), Query Frame = 1
Query:  229 VILGIDEAGRGPVLGPMTYGAAYWSCADDQDVSAMGFDDSKALTPDQRTGLFDRIDATPQVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKEVKFVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSEDRGYGSGYPGDERCKKWLETNVDSVFGFPDICRFSWGTTKELLKGCAGKRVDW--EEEPDEEAA--GMKSITSFMVQPKKKA----RANLFVKRGLELVDTF 1041
            V+LGIDEAGRGPVLGPM YGAA+W  A D  +SAMGFDDSKAL+ + R  LF ++ AT Q+GWV+RLISA+E+SDKM R+   +LN +S +AA +MIRA QA+GV VT VYVDTVGDP  YQ  L K+F   ++F V KKADSL+K VSAASI AKVTRDR I +W+W  P LD  +D  +GSGYP D R K WL  N++ +F FP+I RFSWGT +  L      +V+W  E+E D+ +A  G +SITSF+  PKK      R + F  R L+ V  F
Sbjct:   35 VMLGIDEAGRGPVLGPMVYGAAFWPVAQDAKLSAMGFDDSKALSAETREQLFAKMRATDQLGWVVRLISAQEISDKMQRQTS-NLNEMSRNAAIQMIRATQAKGVNVTHVYVDTVGDPKWYQTFLTKQFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRAISEWKWEAPALDLPKD--FGSGYPSDPRTKTWLVDNLEPLFAFPNIVRFSWGTVEPFLAKAV--KVEWPHEKELDKASAPAGTQSITSFLQAPKKAPSAAKRTSFFADRKLQDVTDF 308          
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Match: K3WMP3_GLOUD (Ribonuclease n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMP3_GLOUD)

HSP 1 Score: 277 bits (709), Expect = 2.760e-85
Identity = 146/281 (51.96%), Postives = 191/281 (67.97%), Query Frame = 1
Query:  229 VILGIDEAGRGPVLGPMTYGAAYWSCADDQDVSAMGFDDSKALTPDQRTGLFDRIDATPQVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKEVKFVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSEDRGYGSGYPGDERCKKWLETNVDSVFGFPDICRFSWGTTKELLKGCAGKRVDWEEEPDEEAA----GMKSITSFMVQPKKKA------RANLFVKRGLELVDTF 1041
            V+LGIDEAGRGPV+GPM YGAA+W  A + ++SA+GFDDSKAL+ + R GLF+++ A  ++GW++R+ISA+E+SDKM R+   +LN +S DAA +MIR  QA+GV V QV+VDTVGDP  YQ  L K+F   ++F V KKADSL+K VSAASI AKVTRDRII  W W  P L+  +D  +GSGYP D + K WL  ++D +FGFP+I RFSWGT +  L      +V+W  + + E A    G +SITSF+  PKK        R   F  R L+ V  F
Sbjct:   33 VMLGIDEAGRGPVMGPMVYGAAFWPVAQNDEMSALGFDDSKALSAESREGLFEKMKANKELGWIVRMISAQEISDKMQRQTS-NLNEMSRDAAIQMIRETQAKGVNVKQVFVDTVGDPKWYQTFLTKQFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRIIVDWEWEAPALNLRKD--FGSGYPSDPKTKAWLSEHMDDLFGFPNIVRFSWGTIEPFLLKAV--KVEWPHDKELEKANTPTGTQSITSFLQAPKKDKTQPAAKRPRFFADRKLQDVTDF 308          
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Match: A0A6A3Y691_9STRA (Ribonuclease n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Y691_9STRA)

HSP 1 Score: 277 bits (708), Expect = 3.100e-85
Identity = 147/281 (52.31%), Postives = 191/281 (67.97%), Query Frame = 1
Query:  229 VILGIDEAGRGPVLGPMTYGAAYWSCADDQDVSAMGFDDSKALTPDQRTGLFDRIDATPQVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKEVKFVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSEDRGYGSGYPGDERCKKWLETNVDSVFGFPDICRFSWGTTKELLKGCAGKRVDWEEEPDEEAA----GMKSITSFMVQPKKKA------RANLFVKRGLELVDTF 1041
            VILGIDEAGRGPV+GPM YGAAYW  AD++ + A+GFDDSKAL+ + R  LF+++ +T  +GW++RLISA E+SDKM R+   +LN IS DAA ++I  VQ +G  V +V+VDTVGDP  YQ+ L K F   ++F V KKADSL+K VSAASI AKVTRDR+I  W+W  P LD   D  +GSGYP D + K WL T++D VF FP+I RFSWGT +   +     +V+W  + + E A    G +SITSF+ +P KKA      RA  F +R L+ V  F
Sbjct:   26 VILGIDEAGRGPVMGPMVYGAAYWPVADNEAMCALGFDDSKALSAESRAQLFEKMQSTEGLGWIVRLISAVEISDKMQRQTS-NLNEISRDAAIQLINEVQKKGTVVKKVFVDTVGDPRWYQSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRVISDWKWESPALDLPTD--FGSGYPSDPKTKAWLATHMDQVFVFPNIIRFSWGTVEPFFEKAV--KVEWPHDKELEKASAPAGTQSITSFLAKPAKKAKTSTSARAAFFTQRRLQDVTDF 301          
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Match: W7TUP4_9STRA (Ribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUP4_9STRA)

HSP 1 Score: 276 bits (705), Expect = 3.750e-84
Identity = 162/286 (56.64%), Postives = 189/286 (66.08%), Query Frame = 1
Query:  229 VILGIDEAGRGPVLGPMTYGAAYWSCADDQDVSAMGFDDSKALTPDQRTGLFDRIDAT-PQVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKE---VKFVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSE--DRGYGSGYPGDERCKKWLETNVDSVFGFPDICRFSWGTTKELL-KGCAGKRVDWEEEPDEEA--AGMKSITSFMVQPK----KKAR--ANLFVKRGLELVDTF 1041
            V LGIDEAGRGPVLGPM Y AA+W   +D  + AMGFDDSKAL    R GLF R+  T  QVGWV+  I A E++ KM  + P SLN ISHD+AA+M+  V A GV VT+V+VDTVGDP  YQ KLE  FG     + F VAKKADSLYKTVSAASI AKVTRDR I  W W E   DF +     +GSGYPGD RC +WL  N + VFGFP + RFSW TT+EL+ K C G  V+WEEE +     AG  SI +F V+PK    KKAR  A  F +RG+E V  F
Sbjct:   68 VKLGIDEAGRGPVLGPMVYAAAFWKVEEDDAMIAMGFDDSKALDEKTRDGLFQRMLRTHEQVGWVIHSIPATEVAGKMLMREPTSLNKISHDSAADMLSLVLAEGVCVTEVFVDTVGDPDTYQRKLEGLFGHHTPAIAFTVAKKADSLYKTVSAASIAAKVTRDRAIRDWVWEE---DFPQALSTDFGSGYPGDARCAEWLRKNSNPVFGFPSLVRFSWSTTRELMEKECVG--VEWEEEEENGGLPAGTASIEAF-VKPKADGPKKARKRAKYFQQRGMETVGDF 347          
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Match: A0A067C1L6_SAPPC (Ribonuclease n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1L6_SAPPC)

HSP 1 Score: 273 bits (699), Expect = 3.890e-84
Identity = 148/268 (55.22%), Postives = 181/268 (67.54%), Query Frame = 1
Query:  229 VILGIDEAGRGPVLGPMTYGAAYWSCADDQDVSAMGFDDSKALTPDQRTGLFDRIDATPQVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKEVKFVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSEDRGYGSGYPGDERCKKWLETNVDSVFGFPDICRFSWGTTKELLKGCAGKRVDWEEEPDEEAAGMKSITSFMVQP-KKKARANLFVKRGLEL 1029
            V+LGIDEAGRGP+LGPM YGAAYW  + D  + AMGFDDSKAL+ D RT LF +I AT  VG+V R ISA E+S  M  +   +LN +S DAA EMI AVQ  GV++T VYVDTVGDPG YQ+ L K FG  + F V KKADSLYK VSAASI AKVTRD  + +W W   +L    D  YGSGYP D + K+WL  +V+ VFG+P+I RFSWGT +  L   A   V+W  + ++  AG +SI SFM  P KK+ R   FV+  LE+
Sbjct:   18 VMLGIDEAGRGPILGPMVYGAAYWPVSLDSTMRAMGFDDSKALSHDSRTQLFAKIKATADVGYVTRSISAAEISHNMLTR-RRNLNEMSRDAAIEMILAVQKAGVRLTHVYVDTVGDPGWYQSFLTKRFGGAITFTVEKKADSLYKVVSAASIAAKVTRDAEVSEWTWEHASLKLPID--YGSGYPSDPKTKQWLAAHVERVFGYPNILRFSWGTLESYLDRMAA--VEWPHDKEDAPAGTQSIKSFMQTPTKKRKRTPYFVQNHLEV 280          
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Match: W2JEM4_PHYPR (Ribonuclease n=16 Tax=Phytophthora TaxID=4783 RepID=W2JEM4_PHYPR)

HSP 1 Score: 274 bits (700), Expect = 4.800e-84
Identity = 145/279 (51.97%), Postives = 189/279 (67.74%), Query Frame = 1
Query:  229 VILGIDEAGRGPVLGPMTYGAAYWSCADDQDVSAMGFDDSKALTPDQRTGLFDRIDATPQVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKEVKFVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSEDRGYGSGYPGDERCKKWLETNVDSVFGFPDICRFSWGTTKELLKGCAGKRVDWEEEPDEEAA----GMKSITSFMVQPKKKA----RANLFVKRGLELVDTF 1041
            V+LGIDEAGRGPV+GPM YGAAYW  AD+  +SA+GFDDSKAL+ + R  LF+++ +T  +GW++RLISA E+SDKM R+   +LN +S DAA ++I  VQ +G  V +V+VDTVGDP  YQ  L K F   ++F V KKADSL+K VSAASI AKVTRDR+I  W W  P L+   D  +GSGYP D + K WL T+VD VF FP+I RFSWGT +  ++     +V+W    D E A    G +SITSF+ +P +KA    RA  F +R ++ V  F
Sbjct:   28 VMLGIDEAGRGPVMGPMVYGAAYWPVADNDAMSALGFDDSKALSAESRAQLFEKMQSTEGLGWIVRLISAAEISDKMQRQTS-NLNEMSRDAAIQLINEVQKKGAVVKKVFVDTVGDPRWYQTFLTKHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRVITDWMWESPALELPTD--FGSGYPSDPKTKAWLATHVDQVFVFPNIIRFSWGTVEPFIEKAV--KVEWPHGKDLEKANAPTGTQSITSFLAKPVQKAKPATRAAFFTQRNMQDVTDF 301          
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Match: A0A485KLJ7_9STRA (Ribonuclease n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLJ7_9STRA)

HSP 1 Score: 267 bits (683), Expect = 1.060e-81
Identity = 143/273 (52.38%), Postives = 182/273 (66.67%), Query Frame = 1
Query:  229 VILGIDEAGRGPVLGPMTYGAAYWSCADDQDVSAMGFDDSKALTPDQRTGLFDRIDATPQVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKEVKFVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSEDRGYGSGYPGDERCKKWLETNVDSVFGFPDICRFSWGTTKELLKGCAGKRVDWEEEPDEEAAGMKSITSFMVQ----PKKKARANLFVKRGLELVD 1035
            V+LGIDEAGRGP+LGPM YGAAYW   D++ +SA GFDDSKAL+ + R  LF +I AT  +G+V R I A E+S  M  +   +LN +S DAA EMI AVQ RGV+V  VYVDTVGDPG Y+  L K F   + F V KKADSL+K VSAASI AKVTRD  + +W +  P LD S    YGSGYP D +CK+WL  N++ VFG+P+I RFSWGT +  +      +VDW  + ++  AG +SI SFM      PKK+ R+  F +R L++V 
Sbjct:   18 VMLGIDEAGRGPILGPMVYGAAYWRVKDNETMSAQGFDDSKALSHESRERLFAKIKATADMGYVTRSIPASEISHNMLTR-RRNLNEMSRDAAIEMICAVQKRGVRVAHVYVDTVGDPGWYKNFLTKHFHGTIVFTVEKKADSLFKVVSAASICAKVTRDAAVAQWTYEGPGLD-SLPTDYGSGYPSDPKCKQWLADNLEPVFGYPNIVRFSWGTLESYVDRLV--KVDWPHDKEDAPAGTQSIMSFMAPSASAPKKRKRSAFFTQRHLDIVS 286          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1065.881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP9_ECTSI3.500e-18881.31Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A6V1NB11_HETAK9.330e-9955.88Ribonuclease n=1 Tax=Heterosigma akashiwo TaxID=28... [more]
A0A835YL34_9STRA1.020e-8853.05Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A5D6XNI5_9STRA1.150e-8755.56Ribonuclease n=1 Tax=Pythium brassicum TaxID=14850... [more]
K3WMP3_GLOUD2.760e-8551.96Ribonuclease n=1 Tax=Globisporangium ultimum (stra... [more]
A0A6A3Y691_9STRA3.100e-8552.31Ribonuclease n=3 Tax=Phytophthora TaxID=4783 RepID... [more]
W7TUP4_9STRA3.750e-8456.64Ribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A067C1L6_SAPPC3.890e-8455.22Ribonuclease n=2 Tax=Saprolegnia TaxID=4769 RepID=... [more]
W2JEM4_PHYPR4.800e-8451.97Ribonuclease n=16 Tax=Phytophthora TaxID=4783 RepI... [more]
A0A485KLJ7_9STRA1.060e-8152.38Ribonuclease n=1 Tax=Aphanomyces stellatus TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1065contigS-firma_F_contig1065:4540..9084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LRP9
PFAMsRNase_HII
Max annot lvl2759|Eukaryota
KEGG koko:K06618,ko:K10743
KEGG Pathwayko01522,ko03030,ko04110,ko04218,ko04934,ko05161,ko05165,ko05166,ko05167,ko05169,ko05200,ko05203,ko05212,ko05214,ko05215,ko05218,ko05219,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map01522,map03030,map04110,map04218,map04934,map05161,map05165,map05166,map05167,map05169,map05200,map05203,map05212,map05214,map05215,map05218,map05219,map05220,map05222,map05223,map05224,map05225,map05226
KEGG ModuleM00692
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576
Evalue6.65e-193
EggNOG OGsCOG0164@1|root,KOG2299@2759|Eukaryota
EC3.1.26.4
DescriptionRNA-DNA hybrid ribonuclease activity
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease H-like domain
Ec32 orthologEc-12_000610.1
Exons6
Model size1801
Cds size1014
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1065.881.1prot_S-firma_F_contig1065.881.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1065 5297..9054 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.0086951-UTR-S-firma_F_contig1065:4539..52961622815604.0086951-UTR-S-firma_F_contig1065:4539..5296Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1065 4540..5296 -
1696949447.5784273-UTR-S-firma_F_contig1065:4539..52961696949447.5784273-UTR-S-firma_F_contig1065:4539..5296Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1065 4540..5296 -
1622815604.0825593-UTR-S-firma_F_contig1065:9054..90841622815604.0825593-UTR-S-firma_F_contig1065:9054..9084Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1065 9055..9084 -
1696949447.6749744-UTR-S-firma_F_contig1065:9054..90841696949447.6749744-UTR-S-firma_F_contig1065:9054..9084Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1065 9055..9084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.02268-CDS-S-firma_F_contig1065:5296..54231622815604.02268-CDS-S-firma_F_contig1065:5296..5423Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 5297..5423 -
1696949447.5894337-CDS-S-firma_F_contig1065:5296..54231696949447.5894337-CDS-S-firma_F_contig1065:5296..5423Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 5297..5423 -
1622815604.0323522-CDS-S-firma_F_contig1065:5843..60641622815604.0323522-CDS-S-firma_F_contig1065:5843..6064Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 5844..6064 -
1696949447.599456-CDS-S-firma_F_contig1065:5843..60641696949447.599456-CDS-S-firma_F_contig1065:5843..6064Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 5844..6064 -
1622815604.0412097-CDS-S-firma_F_contig1065:6813..69011622815604.0412097-CDS-S-firma_F_contig1065:6813..6901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 6814..6901 -
1696949447.6093338-CDS-S-firma_F_contig1065:6813..69011696949447.6093338-CDS-S-firma_F_contig1065:6813..6901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 6814..6901 -
1622815604.0507488-CDS-S-firma_F_contig1065:7363..75721622815604.0507488-CDS-S-firma_F_contig1065:7363..7572Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 7364..7572 -
1696949447.6385074-CDS-S-firma_F_contig1065:7363..75721696949447.6385074-CDS-S-firma_F_contig1065:7363..7572Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 7364..7572 -
1622815604.0600033-CDS-S-firma_F_contig1065:7898..82021622815604.0600033-CDS-S-firma_F_contig1065:7898..8202Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 7899..8202 -
1696949447.6516206-CDS-S-firma_F_contig1065:7898..82021696949447.6516206-CDS-S-firma_F_contig1065:7898..8202Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 7899..8202 -
1622815604.0715537-CDS-S-firma_F_contig1065:8989..90541622815604.0715537-CDS-S-firma_F_contig1065:8989..9054Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 8990..9054 -
1696949447.6634333-CDS-S-firma_F_contig1065:8989..90541696949447.6634333-CDS-S-firma_F_contig1065:8989..9054Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1065 8990..9054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1065.881.1

>prot_S-firma_F_contig1065.881.1 ID=prot_S-firma_F_contig1065.881.1|Name=mRNA_S-firma_F_contig1065.881.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=338bp
MREENGENAKVGNGDSEENGRRIHSSPAACYGSALISSKIPPRCRGKREA
GADPGGGEGELEGGGGVILGIDEAGRGPVLGPMTYGAAYWSCADDQDVSA
MGFDDSKALTPDQRTGLFDRIDATPQVGWVLRLISARELSDKMCRKVPYS
LNVISHDAAAEMIRAVQARGVKVTQVYVDTVGDPGMYQAKLEKEFGKEVK
FVVAKKADSLYKTVSAASIVAKVTRDRIIEKWRWSEPNLDFSEDRGYGSG
YPGDERCKKWLETNVDSVFGFPDICRFSWGTTKELLKGCAGKRVDWEEEP
DEEAAGMKSITSFMVQPKKKARANLFVKRGLELVDTF*
back to top

mRNA from alignment at S-firma_F_contig1065:4540..9084-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1065.881.1 ID=mRNA_S-firma_F_contig1065.881.1|Name=mRNA_S-firma_F_contig1065.881.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4545bp|location=Sequence derived from alignment at S-firma_F_contig1065:4540..9084- (Sphaerotrichia firma ET2_F female)
GCAAACAAGGGCTGTACCAGAAAGCTCGCAATGCGCGAAGAAAATGGGGA GAACGCCAAAGTTGGCAACGGAGATAGCGAAGAAAATGGAAGACGGTGAG AGTGAGATGAGGAGAGCGACCGCTCAGACGATGAGACTATTTTTGAAATT TGAATTTCCGGGTGGTTTGCCTTCATCTTGACCTGGTACTCGAACGGCTG CAACGACGAAGCAGGAAGACGAAGACGCATCCTTTCAAATCGAAATACGA GCGATGGGTAGAGCATGCTTCGACGCATCGTTTTCCTCCGTGAAGCTACG CCGATGATGTGTGGTTGACTCAATCGTGCGGACAGAGGCTGTGCGGGGCA CGATGTTCCCAAGGTCTCGCAAAACCTGGCAACGCCCAGCATTCACACAT TACGCTGCTGTGGAGCGCCACCAAGACCCTGCACGGTCACGATCACACGT TCAGAGACTTTGCTGGAACGGTGATCGAAATCATCATGCCACCCCACTGT GTGAAAAGTTGTGATTTCTCCACCGACCGCCATCCCAAGGTGGAGACGCA AACACGGCAGGCAGCAGGCACCACGGGCACCTGGTAGCATCCCCCCACAG GGTAGACTTCAGCGGTAGTAGCCCTGCATCTCGCCGCCTACACAGCCGCA GAGCACCTCCTTCGCAAGAGCCAGCCATCGACAGACCTTCCGCCCCTTTT ATCAGCCTAGGCCTTCACTATGCCTGTCTGTCTGCCTGTCTCGCACATAT GGTGAAGTCAGAAATCCCGCCCCCCAGATCATGAACACTTGAAACCGTGT TCGACTATGCCGACCTTTCTGTGTGCTTTGCCTCTCTCACCTCTCACCCC CCCCCCCCCGTCCCGTCCCGCCCCTCTACCAGCATACACAGCTCGCCCGC AGCCTGCTACGGATCGGCGCTTATCTCCAGCAAGATTCCGCCTCGGTGTA GGGGCAAAAGGGAAGCGGGGGCAGACCCTGGGGGCGGGGAGGGGGAGTTG GAGGGAGGCGGAGGCGTTATCCTGGGCATCGACGAGGCGGGCAGGGGGCC GGTTCTCGGGCCGATGACGTACGGGGCGGCGTACTGGAGTTGCGCAGACG ACCAGGACGTGTCGGCCATGGGTTTCGACGATTCGAAGGCGTTGACGCCG GACCAAAGGACGGGCCTCTTCGATCGCATAGATGCGGTGCGTGTGCCTGC GTGCGTGGCGCCTGCTGGGTACATGCCTGCCTGCTTGCCTCTCTCCCTGT TGTAGTCTAAAGTAGACCTACATCAGTATGTTTAATAGTCTACTGCTGTA GTCCGCAGTCTTGCAGTCCACCACGCTTTCTAGCGCTCCTTGCCTCCTCC CTGACACCTGACACCTGACACTCTGTTTCACTCTCTCTCCACTCTCCCTG GCTACTCTGTTCTGGACTCTTATGTATCTACCCCTTTCACGCACCATACC GATCAACCAACCTTGACCCTCTACACCACCACCACCACCTTCCACGAACA CGAATTCTACAGACCCCCCAGGTGGGTTGGGTGCTGCGGCTTATCTCCGC GCGGGAGCTCTCGGACAAGATGTGCCGAAAGGTGCCATACAGCCTCAACG TCATCTCGCACGATGCGGCGGCCGAGATGATCCGGGCGGTGCAGGCCCGT GGCGTCAAGGTCACCCAGGTCTACGTCGACACCGTGGGGGATCCGGGGAT GTATCAGGCCAAGCTTGAAAAGTGAGAGAGTGAGAGCAAGGGAAAACCGC TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCTGTG CGCAGCAGTTGCGCAGAGGTTGTGTGTTGTGAGAGCCGGGAGGAAGTTGA GGGTGAACGGGTAGGACAAGTGCACCGGTTTCCTCCCTCCCTTTCAAGTG ATACGGCATTAATCTCCAGGTTGAAGTTGACGTTGATAGAGGCTGTCGGG CTTTATTGTAGGAGTTTTTGCGGCTGGATGGCATGGCATGGACTGCTGTG CGCACAGCAGTAGTACCGGCTGCCGTAAGAAATGTCAAGCACGCCGCCGG CTGGAGCTTGGCGAGAAGACAAGGGGCCGGAGAGCGACAGTCTATCCCTA TCCCTATCCCTATCCCCAACCGAATTTGATATTTGCGTCGTTCTGTTTCG GCCGTTAATGCCTTCTCTTCGGCAACCCCAAAGGGAGTTTGGCAAGGAGG TGAAGTTCGTGGTTGCGAAGAAGGCGGACAGCCTGTACAAGACCGTCAGC GCCGCAAGCATCGTTGCCAAGGTCAGCTGCTCAGACGGCCGCGCTGCTGT TTGTCTAGCACTTGCAGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT TGGTGGTGGTGGTGGTGGTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTG GTGGTGGTGGTGGTGGTGGTGGTGGTGTTGTTGTTGCTGTTGTTGTTGTT GTTGTTGTTGATGTTGATGTTGTTTCAGGTATGTTTCAGGTATGGACCAT GACAACTTTGTATTTAATCTCGCCCGAGGACGAGCGGTTCTCGCGCCAGA GGGAAGGAAGGAGCGTCAATCACGACGACGCCACGTTTAGCCTCTCGTTT TGCGTGCCCTCAAGTGCCGAATGGAATAATGAATACTTGCAAACATGTGC TTGATCTGCTGGCTGGCTGCACCATGTGTTTGTTGACCTTTGGCATCTCC GAGGGACATGCATGCTCGAGTACTCCTTCCATCTCCGTCGCTGTGGCTGT GGTGCGCAGTACGGTTTGAGTACGGCTGGCGGGACGTGCTCTCTACCTGC GAGGCATAGTCTGCCAGTAACAGTACCAGTGGCTCTCCTCTTCTGTTCTC AGACCCTAAATCTCTTGTTGGATATCTTTTCACTCGATTCGAGTGGGTTG GATTGGGTTCGGGCGGTGCCGTTTTTATTTTTTCTCTTGTTTCTCCGCCG CGCGCGCTCATCCGTCTTCCACCTTGAGCCTCGCTTGAGCCTCGCGCTGC CTGCCCAACCATTGTGCCAGGTCACCCGCGACCGCATCATCGAGAAATGG CGCTGGTCGGAGCCAAACCTCGACTTCTCCGAGGACCGCGGGTACGGGTC CGGCTATCCCGGGGACGAGCGGTGCAAGAAGTGGCTCGAGACTAACGTTG ATTCCGTCTTCGGTTTCCCCGACATTTGCCGATTCAGCTGGGGCACCACG AAGGAGCTGCTTAAGGGGTGCGCCGGCAAGAGAGTGGACTGGTAAGATGC AACACTATAACATAATGACATGCAACACTATGATAAGATTCAACACTATA TTAAGATGCAGTGCAACGCCAAGGCGACCAGACCGAGGTTGAAGGTCAAG GGGTCTATGCGAACGCCACCGCCGCGCAGCGTAGAGCTTCGAATCGCAGG AGAGTGGTGGAGCTTCACACGGCCGCCACAAGCTTTAGGGGTTCGAGTGT AGAATCCGTACGCATCATGTTGTGCTTTTTTTGTGAGTGTAAATTGTACT TCTAACTCCGCCCGCTTCGTCCTGCTGCTTGCTCGCCGCTTTACCTTTTG ACCCCGAAAATGCTCTGCGCGGTATGTATGTTCTTGTGCCGTTTATGTTT TCTTTTTTCTCGGCGAAACGTTGGCATGAATTGAATTAATTGGACACGGG ACAAACAATAGGGAGGAAGAGCCGGACGAAGAAGCGGCGGGGATGAAGTC CATCACAAGCTTCATGGTGCAGCCCAAGAAAAAGGCTCGGGCGAACCTGT TCGTGAAGCGGGGGCTCGAGCTCGTGGACACCTTTTAGCTTGCTTCGGCA GTCGAGTCTTGTCTCTGATGTTGCCCACTTCTGTGAGGAAGGAAGTGACT CGTTGGCTGTGGTGCTAGTCTAGCTTGTACGCCCTTCTCTTTCGGCTCTA GCGCTGCTGTTGTGGTCTTTACGCGTTATTTATGTCAAGCGCTCCGATGA GTCAACAGTAGACGGCAGCAAGCAGTATTTTAGGTGTGGTGTGCTCGGCC CATCGCGTCGGAGTGGGTGGTAAGCTTTGATCAAGCTAAAAATGGGGCCA AGAAGGGGGAGAGGGGCCCGGCATATCGAAAGAAAACGTACGGTGAGAGA GCGGTAATGGTGTAACTCGTCGCCAGAGCGATATTTGGGCGTTGCAGCAG ATTACTCAGAAAATCGGGGCCACCCAGTACAACACTGTTGTCCTTCCCGA CTGTTTTGTTGCTTAAAATTAATTTGTCGGTGGTATGGTATGGTATGATA CACCTACCCTAGATTTCTACCTGTAGCCTGCTGTGGTGCTCATGCTTGAA GTACGTCTACTTGGAAACAACGATATTGTCGTCGACAGCTGTATTCGGGG CCCGAAGGGATCGATTCGATTGTTGACTATTCGACTGCAGACTAGTCGAC TGCAGGAATCGGTCGCGCTCTCTTTCCCCGGAAGGGCAAGGAGGCGGTTT TAGTATGTTGTGTAGTATGGCGTGACGCTATGTAGAAATGACTTGTGTTC GCAGCCACGCCAGCGGTAGTTCGATATGCATAGTGTAGCGCCAAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1065:4540..9084-

>mRNA_S-firma_F_contig1065.881.1 ID=mRNA_S-firma_F_contig1065.881.1|Name=mRNA_S-firma_F_contig1065.881.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2028bp|location=Sequence derived from alignment at S-firma_F_contig1065:4540..9084- (Sphaerotrichia firma ET2_F female)
ATGCGCGAAGAAAATGGGGAGAACGCCAAAGTTGGCAACGGAGATAGCGA
AGAAAATGGAAGACGATGCGCGAAGAAAATGGGGAGAACGCCAAAGTTGG
CAACGGAGATAGCGAAGAAAATGGAAGACGCATACACAGCTCGCCCGCAG
CCTGCTACGGATCGGCGCTTATCTCCAGCAAGATTCCGCCTCGGTGTAGG
GGCAAAAGGGAAGCGGGGGCAGACCCTGGGGGCGGGGAGGGGGAGTTGGA
GGGAGGCGGAGGCGTTATCCTGGGCATCGACGAGGCGGGCAGGGGGCCGG
TTCTCGGGCCGATGACGTACGGGGCGGCGTACTGGAGTTGCGCAGACGAC
CAGGACGTGTCGGCCATGGGTTTCGACGATTCGAAGGCGTTGACGCCGGA
CCAAAGGACGGGCCTCTTCGATCGCATAGATGCGCATACACAGCTCGCCC
GCAGCCTGCTACGGATCGGCGCTTATCTCCAGCAAGATTCCGCCTCGGTG
TAGGGGCAAAAGGGAAGCGGGGGCAGACCCTGGGGGCGGGGAGGGGGAGT
TGGAGGGAGGCGGAGGCGTTATCCTGGGCATCGACGAGGCGGGCAGGGGG
CCGGTTCTCGGGCCGATGACGTACGGGGCGGCGTACTGGAGTTGCGCAGA
CGACCAGGACGTGTCGGCCATGGGTTTCGACGATTCGAAGGCGTTGACGC
CGGACCAAAGGACGGGCCTCTTCGATCGCATAGATGCGACCCCCCAGGTG
GGTTGGGTGCTGCGGCTTATCTCCGCGCGGGAGCTCTCGGACAAGATGTG
CCGAAAGGTGCCATACAGCCTCAACGTCATCTCGCACGATGCGGCGGCCG
AGATGATCCGGGCGGTGCAGGCCCGTGGCGTCAAGGTCACCCAGGTCTAC
GTCGACACCGTGGGGGATCCGGGGATGTATCAGGCCAAGCTTGAAAAACC
CCCCAGGTGGGTTGGGTGCTGCGGCTTATCTCCGCGCGGGAGCTCTCGGA
CAAGATGTGCCGAAAGGTGCCATACAGCCTCAACGTCATCTCGCACGATG
CGGCGGCCGAGATGATCCGGGCGGTGCAGGCCCGTGGCGTCAAGGTCACC
CAGGTCTACGTCGACACCGTGGGGGATCCGGGGATGTATCAGGCCAAGCT
TGAAAAGGAGTTTGGCAAGGAGGTGAAGTTCGTGGTTGCGAAGAAGGCGG
ACAGCCTGTACAAGACCGTCAGCGCCGCAAGCATCGTTGCCAAGGGAGTT
TGGCAAGGAGGTGAAGTTCGTGGTTGCGAAGAAGGCGGACAGCCTGTACA
AGACCGTCAGCGCCGCAAGCATCGTTGCCAAGGTCACCCGCGACCGCATC
ATCGAGAAATGGCGCTGGTCGGAGCCAAACCTCGACTTCTCCGAGGACCG
CGGGTACGGGTCCGGCTATCCCGGGGACGAGCGGTGCAAGAAGTGGCTCG
AGACTAACGTTGATTCCGTCTTCGGTTTCCCCGACATTTGCCGATTCAGC
TGGGGCACCACGAAGGAGCTGCTTAAGGGGTGCGCCGGCAAGAGAGTGGA
CTGGTCACCCGCGACCGCATCATCGAGAAATGGCGCTGGTCGGAGCCAAA
CCTCGACTTCTCCGAGGACCGCGGGTACGGGTCCGGCTATCCCGGGGACG
AGCGGTGCAAGAAGTGGCTCGAGACTAACGTTGATTCCGTCTTCGGTTTC
CCCGACATTTGCCGATTCAGCTGGGGCACCACGAAGGAGCTGCTTAAGGG
GTGCGCCGGCAAGAGAGTGGACTGGGAGGAAGAGCCGGACGAAGAAGCGG
CGGGGATGAAGTCCATCACAAGCTTCATGGTGCAGCCCAAGAAAAAGGCT
CGGGCGAACCTGTTCGTGAAGCGGGGGCTCGAGCTCGTGGACACCTTTTA
GGGAGGAAGAGCCGGACGAAGAAGCGGCGGGGATGAAGTCCATCACAAGC
TTCATGGTGCAGCCCAAGAAAAAGGCTCGGGCGAACCTGTTCGTGAAGCG
GGGGCTCGAGCTCGTGGACACCTTTTAG
back to top