mRNA_S-firma_F_contig10644.874.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10644.874.1
Unique NamemRNA_S-firma_F_contig10644.874.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10644.874.1 vs. uniprot
Match: D7G7Y6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y6_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.890e-20
Identity = 69/187 (36.90%), Postives = 97/187 (51.87%), Query Frame = 3 
Query:  618 EQERQRLKARILRCQDESQLSEETLSTLVDMSDIGDLRSTCDDGTEG------GMLWGYLSRRNAPPHVRKRRANDEYSVWVNEEGTSAYSERAVKACLEAGFVVILEADAPGKTFFGMAGREARDRLGAERLGYEGARKGLGMFPVSEDFVRRCEEGQLG-------FGHKSLSQNSHTWTIDNLE 1139
            E+ R  ++ARILRCQ    L++ET   LVDM   G+L+   D   +G      G+ +G+LSR NAPP+  +RR +D  S W   E    +S+R  +ACL AGF V++E D        +   +A   +   +L   G R+G  MF +SE+FV    EG +G       FG K+      TWTI N E
Sbjct:   17 EERRDNVRARILRCQHGQALAKETCDILVDMWHKGELKDGTDSLGDGFGCLDNGLFYGFLSRDNAPPYNVRRREDDGDSFWSKGEARRRHSDRVFRACLTAGFPVLIEGDITRSVMGAVC--KAAVGMHISKLRNLGVRRGTSMFSLSEEFVDCWVEGNVGDNMLRDAFGGKT------TWTIQNFE 195
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BLAST of mRNA_S-firma_F_contig10644.874.1 vs. uniprot
Match: D7G552_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G552_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.060e-15
Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = 3 
Query:  618 EQERQRLKARILRCQDESQLSEETLSTLVDMSDIGDLRSTCD---DGTEG---GMLWGYLSRRNAPPHVRKRRANDEYSVWVNEEGTSAYSERAVKACLEAGFVVILEAD 929
            E+ R  ++ARILRCQ    L++ET   LVDM   G+L+   D   DG+ G   G+ +G+LSR NAPP+  +RR +D  S W   E    +S+R  +ACL AGF V++E D
Sbjct:   17 EERRDDVRARILRCQHGQALAKETCDILVDMWHKGELKDGTDSFGDGSRGIDNGLFYGFLSRDNAPPYNARRREDDGDSFWSKGEARRRHSDRVFRACLTAGFPVLIEGD 126
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10644.874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Y6_ECTSI2.890e-2036.90Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G552_ECTSI1.060e-1543.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10644contigS-firma_F_contig10644:3039..5095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1392
Cds size1152
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10644.874.1prot_S-firma_F_contig10644.874.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10644 3170..4986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.4354126-UTR-S-firma_F_contig10644:3038..31691622815603.4354126-UTR-S-firma_F_contig10644:3038..3169Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10644 3039..3169 +
1696949447.272068-UTR-S-firma_F_contig10644:3038..31691696949447.272068-UTR-S-firma_F_contig10644:3038..3169Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10644 3039..3169 +
1622815603.478893-UTR-S-firma_F_contig10644:4986..50951622815603.478893-UTR-S-firma_F_contig10644:4986..5095Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10644 4987..5095 +
1696949447.337721-UTR-S-firma_F_contig10644:4986..50951696949447.337721-UTR-S-firma_F_contig10644:4986..5095Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10644 4987..5095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.4457545-CDS-S-firma_F_contig10644:3169..34761622815603.4457545-CDS-S-firma_F_contig10644:3169..3476Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10644 3170..3476 +
1696949447.3000932-CDS-S-firma_F_contig10644:3169..34761696949447.3000932-CDS-S-firma_F_contig10644:3169..3476Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10644 3170..3476 +
1622815603.4568067-CDS-S-firma_F_contig10644:3836..39941622815603.4568067-CDS-S-firma_F_contig10644:3836..3994Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10644 3837..3994 +
1696949447.311821-CDS-S-firma_F_contig10644:3836..39941696949447.311821-CDS-S-firma_F_contig10644:3836..3994Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10644 3837..3994 +
1622815603.466754-CDS-S-firma_F_contig10644:4299..49861622815603.466754-CDS-S-firma_F_contig10644:4299..4986Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10644 4300..4986 +
1696949447.32576-CDS-S-firma_F_contig10644:4299..49861696949447.32576-CDS-S-firma_F_contig10644:4299..4986Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10644 4300..4986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10644.874.1

>prot_S-firma_F_contig10644.874.1 ID=prot_S-firma_F_contig10644.874.1|Name=mRNA_S-firma_F_contig10644.874.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=384bp
MGDYDEAPGRSPKEAVRQPARIAPRPGGASMLHSETRSRSSDAGWVGPVL
ANLRHLAAPTAVVGARPVWSSLPGLLSGPSPSVGRPWLPNTAGNLFGHLA
ALGTGGVSRDMEARDPEVQAGSLRKREDEAEVARRQRRRNQKNASQNRIR
AEKRREAKEVSREQERQRLKARILRCQDESQLSEETLSTLVDMSDIGDLR
STCDDGTEGGMLWGYLSRRNAPPHVRKRRANDEYSVWVNEEGTSAYSERA
VKACLEAGFVVILEADAPGKTFFGMAGREARDRLGAERLGYEGARKGLGM
FPVSEDFVRRCEEGQLGFGHKSLSQNSHTWTIDNLEVRCVLIIFIRAKRV
SDPHQVAPQYTARGTKNSLSVRLNLILDYLTWK*
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mRNA from alignment at S-firma_F_contig10644:3039..5095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10644.874.1 ID=mRNA_S-firma_F_contig10644.874.1|Name=mRNA_S-firma_F_contig10644.874.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2057bp|location=Sequence derived from alignment at S-firma_F_contig10644:3039..5095+ (Sphaerotrichia firma ET2_F female)
CACACATGTCCTCAGGTGTCCTCACCGAGCTTTTATTGGCCACTTGGTCT
TGACGCGGCGAGATTTCGGGAAAGGGCGACAGGAGTTGGGCTTCCACCGG
CAAACCACCACCCACGCGTGTAGACGACAACATGGGAGATTATGATGAAG
CACCCGGGCGGTCCCCGAAGGAGGCGGTGCGACAGCCGGCGCGAATTGCC
CCGCGGCCCGGTGGTGCTAGCATGTTACATTCAGAAACGCGGTCCCGCTC
CTCTGACGCAGGCTGGGTTGGCCCAGTGCTCGCCAATCTGCGCCACTTAG
CAGCTCCGACGGCGGTCGTGGGGGCGCGACCGGTGTGGTCATCGCTTCCT
GGGTTGCTCAGTGGTCCATCTCCGTCGGTGGGTAGGCCGTGGCTCCCCAA
CACGGCTGGGAACTTGTTCGGGCACCTCGCAGCCTTAGGTAAGGACAGGA
CGCGTGTATTCCCCCCGCATCAACCCCGTGGGGATGTGTCCGTGGGGCGA
GCCTTACATCCTTCGCTTTGAGCATCAGTAGGCGGGTTCGACCAGCAAAT
GCCACGCAGGGGGTGGGGGATGCATATGTCGCCTGTGATTGTTTGGACGT
CCCTTCCCCCGATAGAAGCTGAAAATCAACCGGCTGACTGACTATCTATG
TAAACTAGTCTATCTAGTGCGTTGATTTCCAGCTTGTATACCCCCCTCCA
GAGAGTGTCAACTTCACATGTCGCAGCACCAGACTTTGCTACTAGTGGGC
TCGTGGATTAAGGCTAGAGGTTTCGCTGTTCTTCTGAGTTTCCCGCAGGC
ACGGGGGGAGTCAGCAGGGACATGGAGGCGCGTGACCCGGAGGTGCAGGC
CGGGAGTCTGCGGAAGCGTGAGGACGAAGCTGAGGTCGCGAGGAGACAGA
GAAGGAGGAACCAGAAAAACGCCTCGCAGAACCGAATCCGCGCCGAGAAG
CGACGGGTAAGATTGAACGGCGGTAGTGAGCAGCTTTGCACTGAGGTTGC
TACATATCTCCCTTGTTGCTGGGTATCTTTCCTGCACGCGGCAACGGCAA
TACCCGATAGTGCTTCTTTCCTCTCGAGTGACATGGAACTGTCGGTCGGC
GACGTCGAGCGAGCGCGACCACCACATTTACAAGCGTCAATGCAGGGTTG
GTAGCAATTAGGCTCAGTCCACCCGAAGTACGCGAGAGGGTCGTTGCGCA
GCGCCAAAGCAACACGTACGCAGAACGCCGCGCCGTTTTTGCGTTCGCTG
CAATGCCTCAGGAGGCCAAGGAGGTGTCGCGCGAGCAAGAACGCCAGCGC
CTGAAGGCTCGCATCCTTCGCTGCCAAGATGAAAGTCAACTGAGCGAGGA
GACACTGTCGACTCTTGTGGACATGTCCGACATCGGGGACTTGAGGAGTA
CTTGTGACGACGGAACGGAAGGTGGAATGTTGTGGGGGTACCTCTCCCGT
CGGAATGCCCCTCCACACGTTCGAAAACGTAGAGCCAACGATGAGTACTC
AGTCTGGGTCAACGAGGAAGGGACGTCGGCGTATAGCGAGCGAGCGGTGA
AGGCGTGCCTCGAGGCCGGGTTTGTCGTCATTCTTGAGGCAGACGCGCCG
GGCAAGACGTTCTTTGGCATGGCCGGGAGGGAAGCGCGTGATCGTCTGGG
AGCTGAAAGACTCGGCTATGAGGGGGCTAGGAAGGGGCTGGGGATGTTTC
CGGTCAGCGAGGACTTCGTACGACGGTGTGAGGAAGGGCAACTTGGATTC
GGCCACAAGAGTCTCAGTCAAAACTCTCATACATGGACGATCGACAACCT
TGAGGTGCGTTGCGTGCTCATCATATTTATTCGAGCGAAGCGAGTTTCTG
ATCCACACCAAGTTGCTCCGCAATATACGGCCCGAGGAACAAAGAATAGT
TTGTCTGTACGCTTAAACTTGATTTTGGACTACTTGACTTGGAAATAGAC
TGCTGTAGGGCGGACCACACGAAACAAAAAAAAAACAGCGCCGCTGCTCC
CACACAAAACCACCACGCAGTTCTCGGCGCTGAGAGCACTGGGAGGCATC
GGATCGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10644:3039..5095+

>mRNA_S-firma_F_contig10644.874.1 ID=mRNA_S-firma_F_contig10644.874.1|Name=mRNA_S-firma_F_contig10644.874.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2304bp|location=Sequence derived from alignment at S-firma_F_contig10644:3039..5095+ (Sphaerotrichia firma ET2_F female)
ATGGGAGATTATGATGAAGCACCCGGGCGGTCCCCGAAGGAGGCGGTGCG
ACAGCCGGCGCGAATTGCCCCGCGGCCCGGTGGTGCTAGCATGTTACATT
CAGAAACGCGGTCCCGCTCCTCTGACGCAGGCTGGGTTGGCCCAGTGCTC
GCCAATCTGCGCCACTTAGCAGCTCCGACGGCGGTCGTGGGGGCGCGACC
GGTGTGGTCATCGCTTCCTGGGTTGCTCAGTGGTCCATCTCCGTCGGTGG
GTAGGCCGTGGCTCCCCAACACGGCTGGGAACTTGTTCGGGCACCTCGCA
GCCTTAGATGGGAGATTATGATGAAGCACCCGGGCGGTCCCCGAAGGAGG
CGGTGCGACAGCCGGCGCGAATTGCCCCGCGGCCCGGTGGTGCTAGCATG
TTACATTCAGAAACGCGGTCCCGCTCCTCTGACGCAGGCTGGGTTGGCCC
AGTGCTCGCCAATCTGCGCCACTTAGCAGCTCCGACGGCGGTCGTGGGGG
CGCGACCGGTGTGGTCATCGCTTCCTGGGTTGCTCAGTGGTCCATCTCCG
TCGGTGGGTAGGCCGTGGCTCCCCAACACGGCTGGGAACTTGTTCGGGCA
CCTCGCAGCCTTAGGCACGGGGGGAGTCAGCAGGGACATGGAGGCGCGTG
ACCCGGAGGTGCAGGCCGGGAGTCTGCGGAAGCGTGAGGACGAAGCTGAG
GTCGCGAGGAGACAGAGAAGGAGGAACCAGAAAAACGCCTCGCAGAACCG
AATCCGCGCCGAGAAGCGACGGGCACGGGGGGAGTCAGCAGGGACATGGA
GGCGCGTGACCCGGAGGTGCAGGCCGGGAGTCTGCGGAAGCGTGAGGACG
AAGCTGAGGTCGCGAGGAGACAGAGAAGGAGGAACCAGAAAAACGCCTCG
CAGAACCGAATCCGCGCCGAGAAGCGACGGGAGGCCAAGGAGGTGTCGCG
CGAGCAAGAACGCCAGCGCCTGAAGGCTCGCATCCTTCGCTGCCAAGATG
AAAGTCAACTGAGCGAGGAGACACTGTCGACTCTTGTGGACATGTCCGAC
ATCGGGGACTTGAGGAGTACTTGTGACGACGGAACGGAAGGTGGAATGTT
GTGGGGGTACCTCTCCCGTCGGAATGCCCCTCCACACGTTCGAAAACGTA
GAGCCAACGATGAGTACTCAGTCTGGGTCAACGAGGAAGGGACGTCGGCG
TATAGCGAGCGAGCGGTGAAGGCGTGCCTCGAGGCCGGGTTTGTCGTCAT
TCTTGAGGCAGACGCGCCGGGCAAGACGTTCTTTGGCATGGCCGGGAGGG
AAGCGCGTGATCGTCTGGGAGCTGAAAGACTCGGCTATGAGGGGGCTAGG
AAGGGGCTGGGGATGTTTCCGGTCAGCGAGGACTTCGTACGACGGTGTGA
GGAAGGGCAACTTGGATTCGGCCACAAGAGTCTCAGTCAAAACTCTCATA
CATGGACGATCGACAACCTTGAGGTGCGTTGCGTGCTCATCATATTTATT
CGAGCGAAGCGAGTTTCTGATCCACACCAAGTTGCTCCGCAATATACGGC
CCGAGGAACAAAGAATAGTTTGTCTGTACGCTTAAACTTGATTTTGGACT
ACTTGACTTGGAAATAGGAGGCCAAGGAGGTGTCGCGCGAGCAAGAACGC
CAGCGCCTGAAGGCTCGCATCCTTCGCTGCCAAGATGAAAGTCAACTGAG
CGAGGAGACACTGTCGACTCTTGTGGACATGTCCGACATCGGGGACTTGA
GGAGTACTTGTGACGACGGAACGGAAGGTGGAATGTTGTGGGGGTACCTC
TCCCGTCGGAATGCCCCTCCACACGTTCGAAAACGTAGAGCCAACGATGA
GTACTCAGTCTGGGTCAACGAGGAAGGGACGTCGGCGTATAGCGAGCGAG
CGGTGAAGGCGTGCCTCGAGGCCGGGTTTGTCGTCATTCTTGAGGCAGAC
GCGCCGGGCAAGACGTTCTTTGGCATGGCCGGGAGGGAAGCGCGTGATCG
TCTGGGAGCTGAAAGACTCGGCTATGAGGGGGCTAGGAAGGGGCTGGGGA
TGTTTCCGGTCAGCGAGGACTTCGTACGACGGTGTGAGGAAGGGCAACTT
GGATTCGGCCACAAGAGTCTCAGTCAAAACTCTCATACATGGACGATCGA
CAACCTTGAGGTGCGTTGCGTGCTCATCATATTTATTCGAGCGAAGCGAG
TTTCTGATCCACACCAAGTTGCTCCGCAATATACGGCCCGAGGAACAAAG
AATAGTTTGTCTGTACGCTTAAACTTGATTTTGGACTACTTGACTTGGAA
ATAG
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