mRNA_S-firma_F_contig10642.873.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10642.873.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE) HSP 1 Score: 436 bits (1122), Expect = 3.080e-149 Identity = 231/342 (67.54%), Postives = 269/342 (78.65%), Query Frame = 1
Query: 22 ALLLLPGVCHGQQLITTCAELQAAFEQTQTGDVNVEISPAADIECATYTNMTMNSNTLTVSSSEDLSIFFATTLLRRVRFEVTNGAELVWETNVWFDGVGEEEEQNNDGGAVFVGTGSTVHFLNNVEMRDVYIINERDGDSDFAIFVRSGGCVWTNGEFRVDGNAVFTTCEITGAGESPPGPGGAIYVGETGSVLFNGDVSITDTFITDDFGGDGGAIYNLGKVDILGTARFEELRASEGGAIYNGVDAEFIFGTGATAFFRDVGNRDAQGSALYNLGVFEFSGPALFVDAEAPVIVAVDGSETTLSADSAFWDLDDSGAQAISAGATADITIPSSVVFVGF 1047
ALLL+PG CHG LI TC +L AAFEQTQT DV VE+ P ADIEC T+TNMTM SN+LTVSSSE++ F ++ L VR +VTNGA+L WETNV F+G EE + DGGAV+VG GSTV FLN+V+M+D+ IINERD DSDF+ FVRSGGCVWT G FRVDG A FT C+I+GAGESPPGPGGA+YVGETGSVLFNG V+ITDT ITDDFGG GG IYNLGKV+I G +RFE++ AS G AIYNG A F F +GA AFF+D+ NRD++GSAL+N G F+FSGPALF DAE PVIVAVD SET +S DSAFW D+S A+S AD T+P SV FVGF
Sbjct: 91 ALLLIPGACHG--LIETCDDLLAAFEQTQTEDVVVEMHPFADIECETFTNMTMTSNSLTVSSSENIDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEG-DEETDLMVDGGAVYVGEGSTVRFLNDVQMQDIAIINERDEDSDFSSFVRSGGCVWTAGYFRVDGEATFTGCDISGAGESPPGPGGAVYVGETGSVLFNGGVTITDTHITDDFGGSGGGIYNLGKVNIKGDSRFEDISASSGVAIYNGEGATFNFRSGARAFFKDLNNRDSEGSALFNRGFFKFSGPALFFDAELPVIVAVDNSETIISEDSAFWTWDESPGDALSVNDGADFTLPDSVTFVGF 429
BLAST of mRNA_S-firma_F_contig10642.873.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI) HSP 1 Score: 420 bits (1079), Expect = 6.380e-144 Identity = 228/342 (66.67%), Postives = 261/342 (76.32%), Query Frame = 1
Query: 22 ALLLLPGVCHGQQLITTCAELQAAFEQTQTGDVNVEISPAADIECATYTNMTMNSNTLTVSSSEDLSIFFATTLLRRVRFEVTNGAELVWETNVWFDGVGEEEEQNNDGGAVFVGTGSTVHFLNNVEMRDVYIINERDGDSDFAIFVRSGGCVWTNGEFRVDGNAVFTTCEITGAGESPPGPGGAIYVGETGSVLFNGDVSITDTFITDDFGGDGGAIYNLGKVDILGTARFEELRASEGGAIYNGVDAEFIFGTGATAFFRDVGNRDAQGSALYNLGVFEFSGPALFVDAEAPVIVAVDGSETTLSADSAFWDLDDSGAQAISAGATADITIPSSVVFVGF 1047
+LL L GV HG LI TC +LQAAF TQT DV EI P DIEC T+TNMTM SNTLT++SSE+L FF ++ L VR VTNGAEL+WET+V F G EE E DGGAVFVG GSTVHFLN++EM D+ IINERD DSDFA FVRSGGCVWT G F VDG A FT C+ITGAGESPPGPGGAIYVG TGSV FN V+I++TFITDDFGG GG IYNLG+V I G +RFE++ AS G AIYNG AEF F A+AFFRD+ NRD+ GS L NLG FEFSGPALFV+A+APVIVA + S+T LS +SAFW D+ +A+S AD TIP+SVVFVGF
Sbjct: 10 SLLFLVGVAHG--LIETCEDLQAAFNLTQTQDVIDEIHPFQDIECETFTNMTMTSNTLTLNSSENLDNFFGSSSLTNVRLVVTNGAELIWETHVNFIG-DEEVELMVDGGAVFVGEGSTVHFLNDLEMEDIRIINERDEDSDFASFVRSGGCVWTAGSFIVDGEATFTRCDITGAGESPPGPGGAIYVGATGSVSFNQGVAISETFITDDFGGQGGGIYNLGEVTIAGDSRFEDISASSGVAIYNGEGAEFYFTNDASAFFRDLNNRDSVGSGLTNLGYFEFSGPALFVEADAPVIVATETSQTILSENSAFWTFDEEFGEALSVDEAADFTIPASVVFVGF 348
BLAST of mRNA_S-firma_F_contig10642.873.1 vs. uniprot
Match: D7G0Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q4_ECTSI) HSP 1 Score: 413 bits (1062), Expect = 2.520e-141 Identity = 228/352 (64.77%), Postives = 271/352 (76.99%), Query Frame = 1
Query: 1 KFFSVAAALLLLPGVCHGQQLITTCAELQAAFEQTQTGDVNVEISPAADIECATYTNMTMNSNTLTVSSSEDLSIFFATTLLRRVRFEVTNGAELVWETNVWFDGVGEEEEQNN-DGGAVFVGTGSTVHFLNNVEMRDVYIINERDGDSDFAIFVRSGGCVWTNGEFRVDGNAVFTTCEITGAGESPPGPGGAIYVGETGSVLFNGDVSITDTFITDDFGGDGGAIYNLGKVDILGTARFEELRASEGGAIYNGVDAEFIFGTGATAFFRDVGNRDAQGSALYNLGVFEFSGPALFVDAEAPVIVAVDGSETTLSADSAFW--DLDDSGAQAISAGATADITIPSSVVFVGF 1047
K FS + ALL++PGV G LI TC +LQAAFE TQT DV EIS DIEC +TNMTM SNTLT++S+EDLSI +T L VR EVTNGA+LVWET+V+F +G+EE +NN +GG VFVG GSTV FLN+V++RDV I NERDGDSD A+FVR GGCVWT G FRVDG A FT+C I G GESPPG GGA++V TGSVLFN V+I+DTFIT+D GGDGG I+NLGKV+I G +RFEEL A G AI+NG DA F F GA+AFFRD+ NRD++GSAL NLG F+FSGP LFVDAEAPVIVA +GS T +S DSAFW + DD +AIS +A+++IP SV FVGF
Sbjct: 4 KLFS-SLALLVIPGVARG--LIETCEDLQAAFELTQTQDVVDEISTFGDIECPMFTNMTMTSNTLTLNSAEDLSITSGSTSLINVRLEVTNGAKLVWETSVFF--LGDEEVENNVNGGGVFVGEGSTVRFLNDVQIRDVRITNERDGDSDNAVFVRDGGCVWTAGFFRVDGEATFTSCAIIGTGESPPGSGGAVFVDATGSVLFNQGVAISDTFITNDGGGDGGGIFNLGKVNIKGDSRFEELSARSGAAIFNGEDASFNFRNGASAFFRDLSNRDSEGSALVNLGFFKFSGPVLFVDAEAPVIVATEGSTTIISRDSAFWMFENDDVTGEAISVADSAEVSIPGSVSFVGF 350
BLAST of mRNA_S-firma_F_contig10642.873.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI) HSP 1 Score: 397 bits (1019), Expect = 3.100e-135 Identity = 221/342 (64.62%), Postives = 245/342 (71.64%), Query Frame = 1
Query: 22 ALLLLPGVCHGQQLITTCAELQAAFEQTQTGDVNVEISPAADIECATYTNMTMNSNTLTVSSSEDLSIFFATTLLRRVRFEVTNGAELVWETNVWFDGVGEEEEQNNDGGAVFVGTGSTVHFLNNVEMRDVYIINERDGDSDFAIFVRSGGCVWTNGEFRVDGNAVFTTCEITGAGESPPGPGGAIYVGETGSVLFNGDVSITDTFITDDFGGDGGAIYNLGKVDILGTARFEELRASEGGAIYNGVDAEFIFGTGATAFFRDVGNRDAQGSALYNLGVFEFSGPALFVDAEAPVIVAVDGSETTLSADSAFWDLDDSGAQAISAGATADITIPSSVVFVGF 1047
ALLL+PG CHG LI TC +L AAFEQTQT DV VE+ P ADIEC T+TNMTM SNTLT L WETNV F+G EE E DGGAV+VG GSTV FLN+V+MRDV IINERD DSDFA FVRSGGCVWT G FRVDG A FT C+I GAGESPPGPGGA+YVGETGSVLFN V+IT+T ITDDFGG GG IYNLGKV+I G +RFEE+ AS G AIYNG A F F GA AFFRD+ NRD++GSAL NLG F+FSGPA F DAE PVIVA+D SET LS DSAFW D+S A++ AD T+P SV FVGF
Sbjct: 10 ALLLMPGTCHG--LIETCDDLLAAFEQTQTEDVVVEMHPFADIECDTFTNMTMTSNTLT----------------------------LFWETNVIFEG-DEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGKGGGIYNLGKVNIKGDSRFEEISASAGVAIYNGEGATFNFRNGAGAFFRDLNNRDSEGSALVNLGFFKFSGPAFFFDAELPVIVAMDNSETILSEDSAFWTWDESPGDALTVNEGADFTLPDSVTFVGF 320
BLAST of mRNA_S-firma_F_contig10642.873.1 vs. uniprot
Match: D7G2Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y5_ECTSI) HSP 1 Score: 255 bits (651), Expect = 5.640e-79 Identity = 153/315 (48.57%), Postives = 198/315 (62.86%), Query Frame = 1
Query: 16 AAALLLLPG-VCHGQQLITTCAELQAAFEQTQTGDVNVEISPAADIECATYTNMTMNSNTLTVSSSEDLSIFFATTLLRRVRFEVTNGAELVWETNVWFDGVGEEEEQNNDGGAVFVGTGSTVHFLNNVEMRDVYIINERDGDSDFAIFVRSGGCVWTNGEFRVDGNAVFTTCEITGAGESPPGPGGAIYVGETGSVLFNGDVSITDTFITDDFGGDGGAIYNLGKVDILGTARFEELRASEGGAIYNGVDAEFIFGTGATAFFRDVGNRDAQGSALYNLGVFEFSGPALFVDAEAPVIVAVDGSETTLSADSAF 957
AAALLL+ G VC GQ + TC +L AF T + DV VEI P DI C ++T M+M++N+LTV + + S + L VRFEVT+GA+L+W F G E Q+ +GGAV+VG GS+ F + + +V + + + SDFA + GGCV+ +G FRV+G+A F CE +G GES PGPGG +YVGETGSVLF G+V++ D I DD G +GG IYNLGKV+I G A F+ LRA GGAI+NG AEF F GATA F D + D G A++N G F+ SGPA V+ AP V T LS S F
Sbjct: 9 AAALLLVSGSVCQGQ--LETCQDLLDAFALTASQDVVVEIQPGQDITCDSFTTMSMSANSLTVMTPDGQS---GSVGLNEVRFEVTDGAKLLWYPGASFTGT---EYQDVNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFASYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVF 315
BLAST of mRNA_S-firma_F_contig10642.873.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE) HSP 1 Score: 251 bits (642), Expect = 5.750e-75 Identity = 153/319 (47.96%), Postives = 198/319 (62.07%), Query Frame = 1
Query: 16 AAALLLLPG-VCHGQQLITTCAELQAAFEQTQTGDVNVEISPAADIECATYTNMTMNSNTLTVSSSEDLSIFFATTLLRRVRFEVTNGAELVWETNVWFDGVGEEEEQNNDGGAVFVGTGSTVHFLNNVEMRDVYIINERDGDSDFAIFVRSGGCV----WTNGEFRVDGNAVFTTCEITGAGESPPGPGGAIYVGETGSVLFNGDVSITDTFITDDFGGDGGAIYNLGKVDILGTARFEELRASEGGAIYNGVDAEFIFGTGATAFFRDVGNRDAQGSALYNLGVFEFSGPALFVDAEAPVIVAVDGSETTLSADSAF 957
AAALLL+ G VC GQ + TC +L AF T + DV VEI P DI C +T M+M++N+LTV++++ S + L VRFEVT+GA+L W F E + Q+ +GGAV+VG GST F + + +V + + + SDFA + GGCV + +G FRV+G+A F CE +G GES PGPGG +YVGETGSVLF G+V++ D I DD G +GG IYNLGKV+I G A F+ LRA GGAI+NG AEF F GATA F D + D G A++N G F+ SGPA V+ AP V T LS S F
Sbjct: 239 AAALLLVSGSVCRGQ--VETCQDLLDAFALTASQDVVVEIQPGQDITCDNFTTMSMSANSLTVTATDGQS---GSVGLNEVRFEVTDGAKLFWHPGASFT---ETDYQDVNGGAVYVGEGSTARFYDTLTTSEVGVRSVPEEGSDFASYELIGGCVRAYTYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNALFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGTGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVF 549
BLAST of mRNA_S-firma_F_contig10642.873.1 vs. uniprot
Match: D8LG63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG63_ECTSI) HSP 1 Score: 209 bits (533), Expect = 1.350e-63 Identity = 107/167 (64.07%), Postives = 127/167 (76.05%), Query Frame = 1
Query: 403 MRDVYIINERDGDSDFAIFVRSGGCVWTNGEFRVDGNAVFTTCEITGAGESPPGPGGAIYVGETGSVLFNGDVSITDTFITDDFGGDGGAIYNLGKVDILGTARFEELRASEGGAIYNGVDAEFIFGTGATAFFRDVGNRDAQGSALYNLGVFEFSGPALFVDAEAP 903
MRDV IINE D DSD+A + SGGCV T G F V+G+A FT CE GAGES PGPGGAI+V ETGSV F+ V+I +T ITDDFGG GG IYNLG+V++ G +RFE++ AS G A+YNG A+ F GATA FRD+ NRD+ GSALY LG FEFSGPALFV+A+ P
Sbjct: 1 MRDVGIINETDEDSDYASYQHSGGCVRTAGTFTVNGDATFTGCESVGAGESAPGPGGAIFVSETGSVSFSEGVTIMETSITDDFGGQGGGIYNLGEVNVAGGSRFEDISASSGVAVYNGEGAQLRFTNGATACFRDLSNRDSVGSALYYLGYFEFSGPALFVEADTP 167 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10642.873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10642.873.1 >prot_S-firma_F_contig10642.873.1 ID=prot_S-firma_F_contig10642.873.1|Name=mRNA_S-firma_F_contig10642.873.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=355bp KFFSVAAALLLLPGVCHGQQLITTCAELQAAFEQTQTGDVNVEISPAADIback to top mRNA from alignment at S-firma_F_contig10642:3934..4998- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10642.873.1 ID=mRNA_S-firma_F_contig10642.873.1|Name=mRNA_S-firma_F_contig10642.873.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1065bp|location=Sequence derived from alignment at S-firma_F_contig10642:3934..4998- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10642:3934..4998- >mRNA_S-firma_F_contig10642.873.1 ID=mRNA_S-firma_F_contig10642.873.1|Name=mRNA_S-firma_F_contig10642.873.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2130bp|location=Sequence derived from alignment at S-firma_F_contig10642:3934..4998- (Sphaerotrichia firma ET2_F female)back to top |