mRNA_S-firma_F_contig10640.872.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10640.872.1
Unique NamemRNA_S-firma_F_contig10640.872.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10640.872.1 vs. uniprot
Match: A0A7S4CP93_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CP93_9EUGL)

HSP 1 Score: 86.3 bits (212), Expect = 1.320e-17
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:   16 PRDFEA--LDDVCRNGTLLCDLVSVIGGPTVTGVFKKPRTRALAEANVKKACQALRSLRGFSPRFLEAYGAIAAGEREPLLGLLEDCHRYDDGVAP 297
            P D E+  +    RNGTLLCDLVS I GP +TGVF+ P+ +    AN++KA +ALR  +G S  +L+    +  G++  +L LLED HRY +G+ P
Sbjct:  108 PEDMESPYVFPYIRNGTLLCDLVSAIEGPRLTGVFRNPKIKGTCLANLRKAMKALRQKKGMSKVYLDMADLVYNGDKVVILALLEDMHRYYNGIPP 203
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BLAST of mRNA_S-firma_F_contig10640.872.1 vs. uniprot
Match: A0A1R2BNK1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BNK1_9CILI)

HSP 1 Score: 82.8 bits (203), Expect = 8.390e-16
Identity = 49/126 (38.89%), Postives = 65/126 (51.59%), Query Frame = 1 
Query:    1 DAPTVPRDFEALDDVCRNGTLLCDLVSVIGGPTVTGVFKKPRTRALAEANVKKACQALRSLRGFSPRFLEAYGAIAAGEREPLLGLLEDCHRYDDGVAPAPFAHTGAPSFPDAGASIHPPQPYFGR 378
            D   +P  F+ L     +G LLCDLV  +    +TGVF+ P T+ALA +NVKKA   L+S+R    +++     I  G    +LGLLED HR+ DGV P              G + H   PYFGR
Sbjct:  501 DRSRIPDSFQELLPDIVSGVLLCDLVGRVIDKPITGVFRSPTTQALALSNVKKALTPLQSIRKMGMKYVWLDEEILKGNYGVILGLLEDLHRFSDGVPPR-----------QRGENYHKDGPYFGR 615
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BLAST of mRNA_S-firma_F_contig10640.872.1 vs. uniprot
Match: C1MVE9_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MVE9_MICPC)

HSP 1 Score: 79.0 bits (193), Expect = 1.870e-14
Identity = 52/128 (40.62%), Postives = 64/128 (50.00%), Query Frame = 1 
Query:   25 FEALDDVCRNGTLLCDLVSVIGGPTVTGVFKKPRTRALAEANVKKACQALRSLRGFSPRFLEAYGAIAAGEREPLLGLLEDCHRYDDGVAPAPFAHTG---------APSFPDAGASIHPPQPYFGRH 381
            F AL      G LLCDLV  + G  V GV + P+T A+AEANV++AC+ L   R    RFL  +  +AAG     LGLLED   + DG+ P     T          APS P A  S   P+  FG H
Sbjct:  340 FAALCPEIAKGVLLCDLVEAVEGVPVVGVTRNPKTPAVAEANVRRACERLARHRMMCRRFLFNHADVAAGIPGITLGLLEDVRAFYDGLPPRTATPTCEHWTEMTPYAPSEPRAAPSGEAPEMQFGGH 467
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10640.872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4CP93_9EUGL1.320e-1744.79Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A1R2BNK1_9CILI8.390e-1638.89Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
C1MVE9_MICPC1.870e-1440.63Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10640contigS-firma_F_contig10640:1316..1782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog38833.XP_003060026.1
Max annot lvl2759|Eukaryota
Evalue3.07e-15
EggNOG OGs2D0VJ@1|root,2SFNU@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.3466227-CDS-S-firma_F_contig10640:1315..15531622815603.3466227-CDS-S-firma_F_contig10640:1315..1553Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10640 1316..1553 -
1696949447.223559-CDS-S-firma_F_contig10640:1315..15531696949447.223559-CDS-S-firma_F_contig10640:1315..1553Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10640 1316..1553 -
1622815603.3572533-CDS-S-firma_F_contig10640:1615..17821622815603.3572533-CDS-S-firma_F_contig10640:1615..1782Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10640 1616..1782 -
1696949447.2359335-CDS-S-firma_F_contig10640:1615..17821696949447.2359335-CDS-S-firma_F_contig10640:1615..1782Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10640 1616..1782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10640.872.1prot_S-firma_F_contig10640.872.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10640 1316..1782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10640.872.1

>prot_S-firma_F_contig10640.872.1 ID=prot_S-firma_F_contig10640.872.1|Name=mRNA_S-firma_F_contig10640.872.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=135bp
DAPTVPRDFEALDDVCRNGTLLCDLVSVIGGPTVTGVFKKPRTRALAEAN
VKKACQALRSLRGFSPRFLEAYGAIAAGEREPLLGLLEDCHRYDDGVAPA
PFAHTGAPSFPDAGASIHPPQPYFGRHVPPNHPPP
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mRNA from alignment at S-firma_F_contig10640:1316..1782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10640.872.1 ID=mRNA_S-firma_F_contig10640.872.1|Name=mRNA_S-firma_F_contig10640.872.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=467bp|location=Sequence derived from alignment at S-firma_F_contig10640:1316..1782- (Sphaerotrichia firma ET2_F female)
GATGCGCCCACCGTGCCGCGGGACTTTGAGGCGCTAGATGACGTGTGCCG
TAACGGCACCCTGCTGTGTGACTTGGTGAGCGTCATTGGCGGCCCCACGG
TGACGGGGGTGTTCAAGAAGCCCCGCACACGCGCCCTCGCGGAAGCCAAC
GTGAAGAAGGCCTGCCAGTGCGTTGGTGTCGTGTTGTTGCTGTCTTACCA
TGACACTTGCGTCACCACGCTGTGCGCAGGGCGCTGCGGTCTCTGCGGGG
ATTTTCCCCACGGTTTTTGGAGGCGTACGGCGCCATTGCGGCAGGGGAGC
GGGAACCGCTGCTGGGCCTGTTGGAGGACTGCCACCGATATGATGACGGC
GTGGCACCGGCCCCCTTTGCACACACCGGAGCGCCGTCGTTTCCGGATGC
GGGGGCCTCCATCCACCCGCCGCAGCCTTACTTTGGGCGCCACGTGCCGC
CAAACCACCCACCGCCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10640:1316..1782-

>mRNA_S-firma_F_contig10640.872.1 ID=mRNA_S-firma_F_contig10640.872.1|Name=mRNA_S-firma_F_contig10640.872.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=810bp|location=Sequence derived from alignment at S-firma_F_contig10640:1316..1782- (Sphaerotrichia firma ET2_F female)
GATGCGCCCACCGTGCCGCGGGACTTTGAGGCGCTAGATGACGTGTGCCG
TAACGGCACCCTGCTGTGTGACTTGGTGAGCGTCATTGGCGGCCCCACGG
TGACGGGGGTGTTCAAGAAGCCCCGCACACGCGCCCTCGCGGAAGCCAAC
GTGAAGAAGGCCTGCCAGATGCGCCCACCGTGCCGCGGGACTTTGAGGCG
CTAGATGACGTGTGCCGTAACGGCACCCTGCTGTGTGACTTGGTGAGCGT
CATTGGCGGCCCCACGGTGACGGGGGTGTTCAAGAAGCCCCGCACACGCG
CCCTCGCGGAAGCCAACGTGAAGAAGGCCTGCCAGGCGCTGCGGTCTCTG
CGGGGATTTTCCCCACGGTTTTTGGAGGCGTACGGCGCCATTGCGGCAGG
GGAGCGGGAACCGCTGCTGGGCCTGTTGGAGGACTGCCACCGATATGATG
ACGGCGTGGCACCGGCCCCCTTTGCACACACCGGAGCGCCGTCGTTTCCG
GATGCGGGGGCCTCCATCCACCCGCCGCAGCCTTACTTTGGGCGCCACGT
GCCGCCAAACCACCCACCGCCGGGCGCTGCGGTCTCTGCGGGGATTTTCC
CCACGGTTTTTGGAGGCGTACGGCGCCATTGCGGCAGGGGAGCGGGAACC
GCTGCTGGGCCTGTTGGAGGACTGCCACCGATATGATGACGGCGTGGCAC
CGGCCCCCTTTGCACACACCGGAGCGCCGTCGTTTCCGGATGCGGGGGCC
TCCATCCACCCGCCGCAGCCTTACTTTGGGCGCCACGTGCCGCCAAACCA
CCCACCGCCG
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