mRNA_S-firma_F_contig10632.862.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10632.862.1
Unique NamemRNA_S-firma_F_contig10632.862.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10632.862.1 vs. uniprot
Match: A0A4Y9XW51_9APHY (Uncharacterized protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XW51_9APHY)

HSP 1 Score: 51.2 bits (121), Expect = 2.560e-5
Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:    4 EVIAWMEAALAEADTNVVLLHCDGGISRSGAMAVAWVMTHPPAGVFTHTVTVDGVDRATAGFDDALAFVRGKRSFVCPNV 243
            E   W++AALAE DTN VL+HC  G+SRS  +  A+V+          T  +  +D        A+ FV  KR  V PN+
Sbjct:   99 ETTEWIKAALAENDTNTVLVHCVVGMSRSATVVCAYVIA---------TTNMTALD--------AIGFVTSKRPVVSPNI 161
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BLAST of mRNA_S-firma_F_contig10632.862.1 vs. uniprot
Match: UPI001F8FE165 (protein-tyrosine phosphatase-like protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=UPI001F8FE165)

HSP 1 Score: 51.2 bits (121), Expect = 2.960e-5
Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:    4 EVIAWMEAALAEADTNVVLLHCDGGISRSGAMAVAWVMTHPPAGVFTHTVTVDGVDRATAGFDDALAFVRGKRSFVCPNV 243
            E   W++AALAE DTN VL+HC  G+SRS  +  A+V+          T  +  +D        A+ FV  KR  V PN+
Sbjct:   99 ETTEWIKAALAENDTNTVLVHCVVGMSRSATVVCAYVIA---------TTNMTALD--------AIGFVTSKRPVVSPNI 161
[Close]
BLAST of mRNA_S-firma_F_contig10632.862.1 vs. uniprot
Match: A0A8H6I9T8_9AGAR (Protein-serine/threonine phosphatase (Fragment) n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6I9T8_9AGAR)

HSP 1 Score: 49.3 bits (116), Expect = 6.530e-5
Identity = 28/80 (35.00%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:    4 EVIAWMEAALAEADTNVVLLHCDGGISRSGAMAVAWVMTHPPAGVFTHTVTVDGVDRATAGFDDALAFVRGKRSFVCPNV 243
            E   ++  ALAE +TN VL+HC  GISRS  +  A++           T  ++G        DDA+ + + +RS VCPN+
Sbjct:   70 ETTKFIADALAENETNKVLVHCQQGISRSATVVCAYICA---------TEGMEG--------DDAIEYAQARRSIVCPNL 132
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10632.862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A4Y9XW51_9APHY2.560e-537.50Uncharacterized protein n=1 Tax=Fomitopsis rosea T... [more]
UPI001F8FE1652.960e-537.50protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A8H6I9T8_9AGAR6.530e-535.00Protein-serine/threonine phosphatase (Fragment) n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10632contigS-firma_F_contig10632:204..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog36331.EPrPI00000022220
PFAMsDSPc
Max annot lvl121069|Pythiales
Evalue3.79e-06
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota,1MCID@121069|Pythiales
DescriptionSource PGD
COG categoryV
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.4702034-UTR-S-firma_F_contig10632:203..2211622815602.4702034-UTR-S-firma_F_contig10632:203..221Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10632 204..221 +
1696949446.6634014-UTR-S-firma_F_contig10632:203..2211696949446.6634014-UTR-S-firma_F_contig10632:203..221Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10632 204..221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.4861689-CDS-S-firma_F_contig10632:221..5301622815602.4861689-CDS-S-firma_F_contig10632:221..530Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10632 222..530 +
1696949446.6896152-CDS-S-firma_F_contig10632:221..5301696949446.6896152-CDS-S-firma_F_contig10632:221..530Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10632 222..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10632.862.1prot_S-firma_F_contig10632.862.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10632 222..530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10632.862.1

>prot_S-firma_F_contig10632.862.1 ID=prot_S-firma_F_contig10632.862.1|Name=mRNA_S-firma_F_contig10632.862.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=103bp
MEAALAEADTNVVLLHCDGGISRSGAMAVAWVMTHPPAGVFTHTVTVDGV
DRATAGFDDALAFVRGKRSFVCPNVSLADCLLIPDHIYYLLGSTPPGSTT
AAA
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mRNA from alignment at S-firma_F_contig10632:204..530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10632.862.1 ID=mRNA_S-firma_F_contig10632.862.1|Name=mRNA_S-firma_F_contig10632.862.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=327bp|location=Sequence derived from alignment at S-firma_F_contig10632:204..530+ (Sphaerotrichia firma ET2_F female)
CCCGAGGTGATTGCGTGGATGGAAGCCGCCCTCGCCGAGGCCGACACAAA
CGTCGTCCTCCTGCACTGTGACGGCGGCATTTCCCGGAGTGGGGCCATGG
CAGTGGCGTGGGTCATGACGCACCCGCCAGCCGGCGTTTTCACCCACACG
GTCACCGTGGACGGCGTGGACCGCGCCACTGCGGGCTTTGACGACGCCCT
GGCGTTCGTCCGCGGAAAGCGCAGCTTTGTTTGCCCCAACGTCAGCTTGG
CGGATTGCTTACTCATTCCGGACCACATTTACTACCTGCTGGGCAGCACG
CCTCCGGGCAGCACCACTGCTGCGGCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10632:204..530+

>mRNA_S-firma_F_contig10632.862.1 ID=mRNA_S-firma_F_contig10632.862.1|Name=mRNA_S-firma_F_contig10632.862.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=618bp|location=Sequence derived from alignment at S-firma_F_contig10632:204..530+ (Sphaerotrichia firma ET2_F female)
ATGGAAGCCGCCCTCGCCGAGGCCGACACAAACGTCGTCCTCCTGCACTG
TGACGGCGGCATTTCCCGGAGTGGGGCCATGGCAGTGGCGTGGGTCATGA
CGCACCCGCCAGCCGGCGTTTTCACCCACACGGTCACCGTGGACGGCGTG
GACCGCGCCACTGCGGGCTTTGACGACGCCCTGGCGTTCGTCCGCGGAAA
GCGCAGCTTTGTTTGCCCCAACGTCAGCTTGGCGGATTGCTTACTCATTC
CGGACCACATTTACTACCTGCTGGGCAGCACGCCTCCGGGCAGCACCACT
GCTGCGGCGATGGAAGCCGCCCTCGCCGAGGCCGACACAAACGTCGTCCT
CCTGCACTGTGACGGCGGCATTTCCCGGAGTGGGGCCATGGCAGTGGCGT
GGGTCATGACGCACCCGCCAGCCGGCGTTTTCACCCACACGGTCACCGTG
GACGGCGTGGACCGCGCCACTGCGGGCTTTGACGACGCCCTGGCGTTCGT
CCGCGGAAAGCGCAGCTTTGTTTGCCCCAACGTCAGCTTGGCGGATTGCT
TACTCATTCCGGACCACATTTACTACCTGCTGGGCAGCACGCCTCCGGGC
AGCACCACTGCTGCGGCG
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