mRNA_S-firma_F_contig10629.857.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10629.857.1
Unique NamemRNA_S-firma_F_contig10629.857.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Match: A0A7S0JMV2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JMV2_CAFRO)

HSP 1 Score: 259 bits (663), Expect = 1.780e-81
Identity = 142/272 (52.21%), Postives = 183/272 (67.28%), Query Frame = 1
Query:   19 ITFSEKELELFTLLRKFIAECDDVKGTTVRVAGGWVRDKILARPSHDIDIALDLHTGEDFANHLNEYLERFGMATNRVHTIEANPDQSKHLATARVWVLGEEIDFVNLRTETYTEDSRIPTAVRVSSQIGLS*VHTPPPLPQSFGTAEEDALRRDFTINAMFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFASRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESLFMLHDVGLLPYV 834
            I+ ++ E  +F +L++ + E + ++ T VRVAGGWVRDK+L + +HDID+ALD  TG  FA  +N  L   G  T+ V+ I+ANP+QSKHL TA   VLG ++DFVNLRTE Y  DSRIPTA                     FGTA EDALRRDFTINA+FYNV EG +ED+T    +DL+AGV+RTPL P TT LDDPLRVMRAVRFA+R+ F L  DL  +++  EV++AL  K++RER+G ELD M+A   P  +L ML   GL+P V
Sbjct:  103 ISLTDLEQRIFGVLKR-VLEQNGLR-TVVRVAGGWVRDKVLGKENHDIDLALDDMTGSAFAEAVNATLASSGERTHTVNVIQANPEQSKHLETATTCVLGMQLDFVNLRTEEYAADSRIPTA--------------------RFGTATEDALRRDFTINALFYNVNEGTIEDLTGHSFADLRAGVVRTPLPPVTTLLDDPLRVMRAVRFAARFGFRLAGDLREALELPEVRSALAGKVSRERVGAELDNMLASARPVGALRMLQARGLMPVV 352          
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Match: A0A5B8MDV0_9CHLO (Hypothetical protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MDV0_9CHLO)

HSP 1 Score: 261 bits (667), Expect = 7.020e-81
Identity = 144/272 (52.94%), Postives = 173/272 (63.60%), Query Frame = 1
Query:   19 ITFSEKELELFTLLRKFIAECDDVKGTTVRVAGGWVRDKILARPSHDIDIALDLHTGEDFANHLNEYLERFGMATNRVHTIEANPDQSKHLATARVWVLGEEIDFVNLRTETYTEDSRIPTAVRVSSQIGLS*VHTPPPLPQSFGTAEEDALRRDFTINAMFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFASRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESLFMLHDVGLLPYV 834
            I  +E+E  LF LLR       D K   VR AGGWVRDK+L R S DIDIALD  +GE+FANHLNEYL   G     V  I +NPDQSKHL TA+V   G EIDFVNLR+E+Y   SRIP                       FGTAEEDA+RRDFTINA+FYN+G+G VED+T KG+ DL+  +IRTPL    TF DDPLRV+RAVRF+SR  F L  +L+ +    EVKAAL TK++RERI  E + MM GP P  +L ++   GLL  +
Sbjct:    4 IDLNEEERRLFDLLRSVARGLGD-KQVEVRCAGGWVRDKLLGRGSDDIDIALDTMSGEEFANHLNEYLTSHGEQRANVAVIRSNPDQSKHLETAKVKYQGIEIDFVNLRSESYASTSRIPEI--------------------EFGTAEEDAVRRDFTINALFYNIGQGNVEDLTGKGLEDLRNKLIRTPLPALQTFTDDPLRVLRAVRFSSRLNFDLHEELVEAASSSEVKAALQTKVSRERISTEFEAMMEGPDPKLALKLIRSFGLLDVI 254          
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Match: A0A1Y1I910_KLENI (Polynucleotide adenylyltransferase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I910_KLENI)

HSP 1 Score: 256 bits (655), Expect = 8.530e-79
Identity = 143/279 (51.25%), Postives = 182/279 (65.23%), Query Frame = 1
Query:    1 VLESVSITFSEKELELFTLLRKFIAECDDVKGTTVRVAGGWVRDKILARPSHDIDIALDLHTGEDFANHLNEYLERFGMATNRVHTIEANPDQSKHLATARVWVLGEEIDFVNLRTETYTEDSRIPTAVRVSSQIGLS*VHTPPPLPQSFGTAEEDALRRDFTINAMFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFASRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESLFMLHDVGLLPYVF 837
            V+E V +   E+ +  F  L++ +A       T +RVAGGWVRDK+L R S DIDIALD   G DFA  +NEYL   G  T  +  I++NPDQSKHL TA+V + G EIDFVNLR+ETY E SRIP A                    +FGTAE+DA RRD TIN++FYN+G G VED+T KG +DL A VIRTPL P+TTFLDDPLRV+RAVRF +R+ FTL P+L+ +    EV+AAL TK++RER+G E+D M+ GP P  ++      GL   +F
Sbjct:    8 VVEMVELNAQEERI--FNTLKQTLAHFG--LKTQLRVAGGWVRDKLLRRDSGDIDIALDDQMGVDFAEKVNEYLRLRGEQTREIGHIKSNPDQSKHLETAKVKIHGTEIDFVNLRSETYAEGSRIPEA--------------------TFGTAEQDAFRRDLTINSLFYNIGTGEVEDLTGKGKADLLARVIRTPLPPRTTFLDDPLRVLRAVRFGARFGFTLDPELVEAASSAEVRAALGTKVSRERMGVEIDLMLKGPDPVGAMRWFDRCGLFSTIF 262          
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Match: A0A7S3FQV5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FQV5_9CHLO)

HSP 1 Score: 254 bits (648), Expect = 3.040e-78
Identity = 135/274 (49.27%), Postives = 179/274 (65.33%), Query Frame = 1
Query:   13 VSITFSEKELELFTLLRKFIAECDDVKGTTVRVAGGWVRDKILARPSHDIDIALDLHTGEDFANHLNEYLERFGMATNRVHTIEANPDQSKHLATARVWVLGEEIDFVNLRTETYTEDSRIPTAVRVSSQIGLS*VHTPPPLPQSFGTAEEDALRRDFTINAMFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFASRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESLFMLHDVGLLPYV 834
            +++  + +ELELF +LR  + + +    T +R AGGWVRDK+L R S DIDIALD  +GE +ANHLN+YL   G     V  I++NP+QSKHL TA+V   G EIDFVNLR+E+Y   SRIP                       FGTAEEDA+RRDFTINA+FYN+G+G VED+T +G+ DL+  +IRTPL    TF+DDPLRV+RAVRFASR+ F +  D+  +    EV+ AL TK++RERI  E + M+ GP+P  +L ++   GLL  V
Sbjct:    1 MAVELNAEELELFGVLRNVVRDLN--LSTELRCAGGWVRDKLLGRESDDIDIALDNMSGETYANHLNDYLASRGEEQTSVAVIQSNPEQSKHLETAKVKYQGLEIDFVNLRSESYASSSRIPEI--------------------EFGTAEEDAMRRDFTINALFYNIGQGNVEDLTGRGLEDLRNKLIRTPLPALQTFMDDPLRVLRAVRFASRFSFEIHHDIAEAASSAEVRDALQTKVSRERISTEFESMLEGPNPKLALQLIKSFGLLDAV 252          
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Match: A0A453K870_AEGTS (Uncharacterized protein n=2 Tax=Triticeae TaxID=147389 RepID=A0A453K870_AEGTS)

HSP 1 Score: 249 bits (635), Expect = 9.850e-78
Identity = 138/283 (48.76%), Postives = 181/283 (63.96%), Query Frame = 1
Query:    1 VLESVSITFSEKEL--ELFTLLRKFIAECDDVKGTTVRVAGGWVRDKILARPSHDIDIALDLHTGEDFANHLNEYLERFGMATNRVHTIEANPDQSKHLATARVWVLGEEIDFVNLRTETYTEDSRIPTAVRVSSQIGLS*VHTPPPLPQSFGTAEEDALRRDFTINAMFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFASRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESLFMLHDVGLLPYVFVF 843
            V ESV +T  E+ +   L  ++R F        GT +RVAGGWVRDK+L + S DIDIALD  TG++F   +NEY +  G     +  I+ NPDQSKHL TAR+ + G  IDFVNLR+E Y E+SRIPT                       GTA+EDALRRD TIN++F+N+    VED+T +G+ DLK G+I TPL  K+TFLDDPLRV+RA+RFA+R+ FTL  DL  +  D++VK+ L +KI+RERIG E+D MM+  HP  +L  + D+GL   VF F
Sbjct:   69 VRESVELTEEEERIFARLLDVVRHFGL------GTQLRVAGGWVRDKLLGKGSADIDIALDNMTGQNFCERVNEYSKFMGEEQKGIGVIQCNPDQSKHLETARMLIYGIWIDFVNLRSEKYAENSRIPTV--------------------EIGTAKEDALRRDLTINSLFFNINTKSVEDLTGRGLEDLKKGLIDTPLPAKSTFLDDPLRVLRAIRFAARFSFTLAEDLKEAASDEKVKSELGSKISRERIGHEVDLMMSDKHPVNALRYIRDLGLFYVVFAF 325          
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Match: A0A5A8DRU4_CAFRO (PolyA_pol domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DRU4_CAFRO)

HSP 1 Score: 259 bits (663), Expect = 2.570e-77
Identity = 142/272 (52.21%), Postives = 183/272 (67.28%), Query Frame = 1
Query:   19 ITFSEKELELFTLLRKFIAECDDVKGTTVRVAGGWVRDKILARPSHDIDIALDLHTGEDFANHLNEYLERFGMATNRVHTIEANPDQSKHLATARVWVLGEEIDFVNLRTETYTEDSRIPTAVRVSSQIGLS*VHTPPPLPQSFGTAEEDALRRDFTINAMFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFASRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESLFMLHDVGLLPYV 834
            I+ ++ E  +F +L++ + E + ++ T VRVAGGWVRDK+L + +HDID+ALD  TG  FA  +N  L   G  T+ V+ I+ANP+QSKHL TA   VLG ++DFVNLRTE Y  DSRIPTA                     FGTA EDALRRDFTINA+FYNV EG +ED+T    +DL+AGV+RTPL P TT LDDPLRVMRAVRFA+R+ F L  DL  +++  EV++AL  K++RER+G ELD M+A   P  +L ML   GL+P V
Sbjct:   88 ISLTDLEQRIFGVLKR-VLEQNGLR-TVVRVAGGWVRDKVLGKENHDIDLALDDMTGSAFAEAVNATLASSGERTHTVNVIQANPEQSKHLETATTCVLGMQLDFVNLRTEEYAADSRIPTA--------------------RFGTATEDALRRDFTINALFYNVNEGTIEDLTGHSFADLRAGVVRTPLPPVTTLLDDPLRVMRAVRFAARFGFRLAGDLREALELPEVRSALAGKVSRERVGAELDNMLASARPVGALRMLQARGLMPVV 337          
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Match: A0A7S3PD87_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PD87_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.660e-77
Identity = 137/278 (49.28%), Postives = 184/278 (66.19%), Query Frame = 1
Query:    4 LESVSITFSEKELELFTLLRKFIAECDDVKGTTVRVAGGWVRDKILARPSHDIDIALDLHTGEDFANHLNEYLERFGMATNRVHTIEANPDQSKHLATARVWVLGEEIDFVNLRTETYTEDSRIPTAVRVSSQIGLS*VHTPPPLPQSFGTAEEDALRRDFTINAMFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFASRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESLFMLHDVGLLPYVF 837
            ++S ++  +E E ++F +L   I   + ++ T +RVAGGWVRDK+L + SHDIDIAL+  TG++FA ++N+YL+  G+ TN++  I ANPDQSKHL TA+V VLG+E+DFVNLR ETY E SRIP         G+            FGTA EDALRRDFT+N +FYNV EG+VED T +G+SD+K  +IRTPL    TF DDPLR+MRA+RFASR  F L  ++    +  E+  AL  K++RERIG EL GM+    P  +L ++ D  L   VF
Sbjct:  104 MKSPTVRVTELESQIFGVLLGTIKRFN-LEKTVIRVAGGWVRDKLLGKNSHDIDIALNNCTGKEFAEYVNKYLKEKGVKTNKIGVICANPDQSKHLETAKVKVLGQELDFVNLRAETYEESSRIP---------GMR-----------FGTALEDALRRDFTVNGLFYNVNEGIVEDFTKRGISDMKLRIIRTPLPACETFRDDPLRIMRAIRFASRLGFELDSEIKFCARLPEILNALANKVSRERIGVELMGMLDSKAPLRALSLISDFDLTKVVF 360          
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Match: A0A453K7T7_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453K7T7_AEGTS)

HSP 1 Score: 249 bits (635), Expect = 2.900e-77
Identity = 138/283 (48.76%), Postives = 181/283 (63.96%), Query Frame = 1
Query:    1 VLESVSITFSEKEL--ELFTLLRKFIAECDDVKGTTVRVAGGWVRDKILARPSHDIDIALDLHTGEDFANHLNEYLERFGMATNRVHTIEANPDQSKHLATARVWVLGEEIDFVNLRTETYTEDSRIPTAVRVSSQIGLS*VHTPPPLPQSFGTAEEDALRRDFTINAMFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFASRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESLFMLHDVGLLPYVFVF 843
            V ESV +T  E+ +   L  ++R F        GT +RVAGGWVRDK+L + S DIDIALD  TG++F   +NEY +  G     +  I+ NPDQSKHL TAR+ + G  IDFVNLR+E Y E+SRIPT                       GTA+EDALRRD TIN++F+N+    VED+T +G+ DLK G+I TPL  K+TFLDDPLRV+RA+RFA+R+ FTL  DL  +  D++VK+ L +KI+RERIG E+D MM+  HP  +L  + D+GL   VF F
Sbjct:   40 VRESVELTEEEERIFARLLDVVRHFGL------GTQLRVAGGWVRDKLLGKGSADIDIALDNMTGQNFCERVNEYSKFMGEEQKGIGVIQCNPDQSKHLETARMLIYGIWIDFVNLRSEKYAENSRIPTV--------------------EIGTAKEDALRRDLTINSLFFNINTKSVEDLTGRGLEDLKKGLIDTPLPAKSTFLDDPLRVLRAIRFAARFSFTLAEDLKEAASDEKVKSELGSKISRERIGHEVDLMMSDKHPVNALRYIRDLGLFYVVFAF 296          
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Match: K3Y624_SETIT (Ubiquitin-like domain-containing protein n=20 Tax=Paniceae TaxID=147428 RepID=K3Y624_SETIT)

HSP 1 Score: 254 bits (648), Expect = 5.270e-77
Identity = 140/281 (49.82%), Postives = 182/281 (64.77%), Query Frame = 1
Query:    1 VLESVSITFSEKELELFTLLRKFIAECDDVKGTTVRVAGGWVRDKILARPSHDIDIALDLHTGEDFANHLNEYLERFGMATNRVHTIEANPDQSKHLATARVWVLGEEIDFVNLRTETYTEDSRIPTAVRVSSQIGLS*VHTPPPLPQSFGTAEEDALRRDFTINAMFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFASRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESLFMLHDVGLLPYVFVF 843
            V E+V +T  EKE ++F  L + +       GT +RVAGGWVRDK+L + S DIDIALD  TG++F   +NEYLE  G     +  I+ NPDQSKHL TAR+ +L   IDFVNLR+E Y E+SRIPT                       GTAEEDA RRD TIN++F+N+    VED+T +G+ DLK G+I TPL  K TFLDDPLRV+RA+RFA+R+ FTL  DL  +  D++VK+ L TKI+RERIG E+D MM+  HP +++  + D+GL   VF F
Sbjct:   70 VRETVELT--EKEEQIFRRLLEVVRHFG--LGTQLRVAGGWVRDKLLGKDSADIDIALDNMTGQNFCEKVNEYLELIGEEQKGIGVIQCNPDQSKHLETARMLILDIWIDFVNLRSEKYAENSRIPT--------------------MEVGTAEEDAYRRDLTINSLFFNINNNSVEDLTGRGIEDLKEGLIVTPLPAKATFLDDPLRVLRAIRFAARFNFTLAEDLKEAASDEKVKSELGTKISRERIGHEIDLMMSDKHPVKAMCDIRDLGLFYVVFSF 326          
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Match: A0A8E2AYJ8_9APHY (PolyA_pol domain-containing protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2AYJ8_9APHY)

HSP 1 Score: 251 bits (642), Expect = 1.650e-76
Identity = 137/277 (49.46%), Postives = 177/277 (63.90%), Query Frame = 1
Query:   13 VSITFSEKELELFTLLRKFIAECDDVKGTTV--RVAGGWVRDKILARPSHDIDIALDLHTGEDFANHLNEYLERFGMATNRVHTIEANPDQSKHLATARVWVLGEEIDFVNLRTETYTEDSRIPTAVRVSSQIGLS*VHTPPPLPQSFGTAEEDALRRDFTINAMFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFASRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESLFMLHDVGLLPYVF 837
            + +  +E E +L TLL +      + KGT    R+AGGWVRDK+L   S+DIDIAL+   G  FA     +     M T  V  IE+NPDQSKHL TAR  +LG E+DFVNLR+E YT +SRIPT V                   +FGT  +DALRRD TINA+FYNV    VED T KG+ DL+ G IRTPLAP+ TFLDDPLRV+R VRFASR+ F L P+L  + +D E++ AL +KI+RER+G+E+D MM G  P  ++ ++HD+ L P +F
Sbjct:    1 MEVRLTETEDQLCTLLDECTRRLKEEKGTQTACRIAGGWVRDKLLGSESNDIDIALENMMGVPFAEAFVAHCAEKKMTTKSVARIESNPDQSKHLETARTTILGTELDFVNLRSEEYTANSRIPTQV-------------------TFGTPLQDALRRDITINALFYNVHTRAVEDHTQKGLEDLRTGTIRTPLAPRETFLDDPLRVIRCVRFASRFGFDLVPELADAARDPEIQDALASKISRERVGEEVDKMMKGRDPLGAIALIHDLSLYPSIF 258          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10629.857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0JMV2_CAFRO1.780e-8152.21Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5B8MDV0_9CHLO7.020e-8152.94Hypothetical protein n=2 Tax=Chloropicon primus Ta... [more]
A0A1Y1I910_KLENI8.530e-7951.25Polynucleotide adenylyltransferase family protein ... [more]
A0A7S3FQV5_9CHLO3.040e-7849.27Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A453K870_AEGTS9.850e-7848.76Uncharacterized protein n=2 Tax=Triticeae TaxID=14... [more]
A0A5A8DRU4_CAFRO2.570e-7752.21PolyA_pol domain-containing protein n=3 Tax=Cafete... [more]
A0A7S3PD87_9STRA2.660e-7749.28Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A453K7T7_AEGTS2.900e-7748.76Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
K3Y624_SETIT5.270e-7749.82Ubiquitin-like domain-containing protein n=20 Tax=... [more]
A0A8E2AYJ8_9APHY1.650e-7649.46PolyA_pol domain-containing protein n=1 Tax=Obba r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10629contigS-firma_F_contig10629:1513..2463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog28583.AMAG_07542T0
Preferred nameCCA1
PFAMsPolyA_pol,PolyA_pol_RNAbd,Tti2
Max annot lvl4751|Fungi
KEGG rclassRC00078
KEGG koko:K00974
KEGG ReactionR09382,R09383,R09384,R09386
KEGG Pathwayko03013,map03013
GOsGO:0001680,GO:0003674,GO:0003824,GO:0004652,GO:0004810,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0031123,GO:0031974,GO:0034470,GO:0034641,GO:0034660,GO:0042780,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0052928,GO:0052929,GO:0070013,GO:0070566,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1990817
Evalue1.42e-33
EggNOG OGsCOG0617@1|root,KOG2159@2759|Eukaryota,38BGG@33154|Opisthokonta,3NU7R@4751|Fungi
EC2.7.7.72
DescriptionBelongs to the tRNA nucleotidyltransferase poly(A) polymerase family
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons3
Model size843
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10629.857.1prot_S-firma_F_contig10629.857.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10629 1513..1918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.044759-CDS-S-firma_F_contig10629:1512..18091622815602.044759-CDS-S-firma_F_contig10629:1512..1809Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10629 1513..1809 -
1696949446.2743087-CDS-S-firma_F_contig10629:1512..18091696949446.2743087-CDS-S-firma_F_contig10629:1512..1809Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10629 1513..1809 -
1622815602.0577343-CDS-S-firma_F_contig10629:1870..19181622815602.0577343-CDS-S-firma_F_contig10629:1870..1918Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10629 1871..1918 -
1696949446.2881796-CDS-S-firma_F_contig10629:1870..19181696949446.2881796-CDS-S-firma_F_contig10629:1870..1918Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10629 1871..1918 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.0706034-UTR-S-firma_F_contig10629:1918..22811622815602.0706034-UTR-S-firma_F_contig10629:1918..2281Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10629 1919..2281 -
1696949446.3021426-UTR-S-firma_F_contig10629:1918..22811696949446.3021426-UTR-S-firma_F_contig10629:1918..2281Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10629 1919..2281 -
1622815602.0835617-UTR-S-firma_F_contig10629:2328..24631622815602.0835617-UTR-S-firma_F_contig10629:2328..2463Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10629 2329..2463 -
1696949446.3128955-UTR-S-firma_F_contig10629:2328..24631696949446.3128955-UTR-S-firma_F_contig10629:2328..2463Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10629 2329..2463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10629.857.1

>prot_S-firma_F_contig10629.857.1 ID=prot_S-firma_F_contig10629.857.1|Name=mRNA_S-firma_F_contig10629.857.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=115bp
MFYNVGEGVVEDMTNKGMSDLKAGVIRTPLAPKTTFLDDPLRVMRAVRFA
SRYRFTLCPDLLASVKDDEVKAALMTKITRERIGQELDGMMAGPHPNESL
FMLHDVGLLPYVFVF
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mRNA from alignment at S-firma_F_contig10629:1513..2463-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10629.857.1 ID=mRNA_S-firma_F_contig10629.857.1|Name=mRNA_S-firma_F_contig10629.857.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=951bp|location=Sequence derived from alignment at S-firma_F_contig10629:1513..2463- (Sphaerotrichia firma ET2_F female)
GTTTTGGAAAGCGTGTCCATTACGTTTTCTGAGAAGGAGTTGGAGCTGTT TACGCTCCTGCGCAAATTCATTGCGGAGTGCGACGACGTCAAGGGCACCA CTGTTCGTGTGGCCGGCGGCTGGGTTCGAGACAAGGTTTGCGTGCGCATG GGCTGACTCTTGCAGGCCTCACCTCGCCCTAGATTCTAGCGCGCCCCAGC CACGACATTGACATTGCGTTGGACTTGCACACCGGGGAGGATTTTGCAAA CCACTTGAACGAGTACTTGGAGCGGTTCGGCATGGCCACGAACCGTGTGC ACACCATTGAGGCCAACCCGGACCAGTCCAAGCACTTGGCGACGGCACGT GTGTGGGTCCTCGGGGAAGAAATCGACTTTGTGAACCTCCGCACGGAAAC TTACACCGAGGATTCCCGCATCCCCACAGCGGTACGTGTTTCTTCCCAGA TTGGGCTTTCTTAAGTTCACACCCCCCCCCCCCTCCCCCAGTCGTTTGGG ACGGCGGAGGAGGACGCCCTGCGGCGTGACTTTACCATCAACGCCATGTT TTACAACGTTGGCGAGGGTGTGGTAGAAGACATGACCAACAAGGTGTGCC CCTCTGTTTCACTCCTGTGCCCGCTGTGCCTGGTTTCACGTCGGCCGCAC GTAGGGCATGTCAGACCTCAAGGCGGGCGTCATTCGGACCCCCTTGGCGC CAAAGACGACGTTTTTGGACGACCCCCTGCGGGTCATGCGTGCCGTGCGG TTTGCCAGTCGGTATCGCTTCACCCTCTGCCCGGACCTCCTGGCAAGTGT GAAGGACGACGAAGTCAAGGCTGCCCTCATGACAAAGATCACCCGCGAGC GCATCGGCCAGGAGCTGGACGGCATGATGGCCGGTCCCCACCCCAACGAG TCCCTTTTCATGCTCCACGACGTCGGCCTCCTGCCGTACGTGTTTGTGTT T
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Coding sequence (CDS) from alignment at S-firma_F_contig10629:1513..2463-

>mRNA_S-firma_F_contig10629.857.1 ID=mRNA_S-firma_F_contig10629.857.1|Name=mRNA_S-firma_F_contig10629.857.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=690bp|location=Sequence derived from alignment at S-firma_F_contig10629:1513..2463- (Sphaerotrichia firma ET2_F female)
ATGTTTTACAACGTTGGCGAGGGTGTGGTAGAAGACATGACCAACAAGAT
GTTTTACAACGTTGGCGAGGGTGTGGTAGAAGACATGACCAACAAGGGCA
TGTCAGACCTCAAGGCGGGCGTCATTCGGACCCCCTTGGCGCCAAAGACG
ACGTTTTTGGACGACCCCCTGCGGGTCATGCGTGCCGTGCGGTTTGCCAG
TCGGTATCGCTTCACCCTCTGCCCGGACCTCCTGGCAAGTGTGAAGGACG
ACGAAGTCAAGGCTGCCCTCATGACAAAGATCACCCGCGAGCGCATCGGC
CAGGAGCTGGACGGCATGATGGCCGGTCCCCACCCCAACGAGTCCCTTTT
CATGCTCCACGACGTCGGCCTCCTGCCGTACGTGTTTGTGTTTGGCATGT
CAGACCTCAAGGCGGGCGTCATTCGGACCCCCTTGGCGCCAAAGACGACG
TTTTTGGACGACCCCCTGCGGGTCATGCGTGCCGTGCGGTTTGCCAGTCG
GTATCGCTTCACCCTCTGCCCGGACCTCCTGGCAAGTGTGAAGGACGACG
AAGTCAAGGCTGCCCTCATGACAAAGATCACCCGCGAGCGCATCGGCCAG
GAGCTGGACGGCATGATGGCCGGTCCCCACCCCAACGAGTCCCTTTTCAT
GCTCCACGACGTCGGCCTCCTGCCGTACGTGTTTGTGTTT
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