mRNA_S-firma_F_contig106.818.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig106.818.1
Unique NamemRNA_S-firma_F_contig106.818.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Match: D8LBC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC5_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 4.490e-52
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 3 
Query:  234 MSSEASAINPELLAEN--APTQFVNEGLLRWERERKAWLAGGSSGPVGRRRTRARTMDVDEVVDDLFSGRGGTGSLPQSIPLPQMICLLVDLWEAEGLFD 527
            MSSE SA NPELL E   A  +FVN GLLRWERERKAWLAGG+ GPVGRRR RARTMDVDEV+DDLFSGRGGTG+LPQS+PLPQMI LLVDLWEAEGLFD
Sbjct:    1 MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGTGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 100
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BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Match: A0A7S1E125_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E125_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.190e-17
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 3 
Query:  291 QFVNEGLLRWERERKAWLAGGSSGPVGRRRTRARTMDVDEVVDDLFSGRGGTGS-----LPQSIPLPQMICLLVDLWEAEGL 521
            QFVN+G L+WE  R  W++        + +T A+ +DVDE++D +FS R  + S      P+++PLPQM+ +LVDLWEAEGL
Sbjct:   34 QFVNQGFLKWEESRNKWISSTQESN-SKTKTGAKALDVDEIIDLIFSQRWRSQSPERNQFPEAVPLPQMVDILVDLWEAEGL 114
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BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Match: A0A835Z3H3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.160e-16
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 3 
Query:  282 APTQFVNEGLLRWERERKAWLAGGSSGPVGRRRT--------RARTMDVDEVVDDLFSGRGGTGSLPQSIPLPQMICLLVDLWEAEGLFD 527
            A   FVN+GL RWE ER+ W+  G                  +A+T+D D ++D +F G+G  G LP+ + LPQMI LLVDLWE EGL+D
Sbjct:   89 AGAPFVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGN-GVLPRPVMLPQMINLLVDLWETEGLYD 177
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BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Match: A0A7S1D623_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D623_CYCTE)

HSP 1 Score: 80.9 bits (198), Expect = 7.990e-16
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 3 
Query:  291 QFVNEGLLRWERERKAWLAGGSSGPVGRRRTRARTMDVDEVVDDLFSGR-----GGTGSLPQSIPLPQMICLLVDLWEAEGL 521
            +F+NEGLLRWE  R  WL   +S    +    A  +DVD ++D +FS R     G   S PQ +PL QM+ +LVDLWEAEGL
Sbjct:  102 EFINEGLLRWEESRATWLKSDTSDSTAKA---AIPLDVDAIIDLIFSQRWRNQEGEASSFPQPVPLTQMVDILVDLWEAEGL 180
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BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Match: A0A7S3KWA5_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWA5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.010e-15
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 3 
Query:  264 ELLAENAPTQFVNEGLLRWERERKAWLA--GGSSGPVGRRRTRARTMDVDEVVDDLF-----SGRGGTGS---LPQSIPLPQMICLLVDLWEAEGL 521
            E+  E     FVN+GL+RWE  R AWL   G S       R  A  +DVD+++D LF      GR G       P+++PLPQM+ +L DLWEAEGL
Sbjct:   96 EMTVEEIRASFVNQGLMRWETARSAWLGERGDSDDTGSSARPTAVPLDVDKIIDVLFYASSREGRAGNAKPEKFPRNVPLPQMVDILQDLWEAEGL 191
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BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Match: A0A448ZS03_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS03_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.090e-15
Identity = 46/96 (47.92%), Postives = 55/96 (57.29%), Query Frame = 3 
Query:  282 APTQFVNEGLLRWERERKAWLAGGSSGPVGRRRTR--ARTMDVDEVVDDLFSGR---------GGTGSL-----PQSIPLPQMICLLVDLWEAEGL 521
            +P  FVN GLLRW+  R  W +GG S P  R      A  +DVDEV+D LF  R         G T SL     P+++PLPQMI +L DLWEAEGL
Sbjct:   55 SPDAFVNNGLLRWQAARSEWCSGGGS-PASRAPASFSAVQLDVDEVIDVLFDPRWRGGPPRTSGSTRSLVPPRFPKNVPLPQMIDVLTDLWEAEGL 149
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BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Match: A0A4D9DFS2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFS2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.130e-14
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 3 
Query:  210 GGKEEAPVMSSEASAINPELLAENAPTQ-FVNEGLLRWERERKAWLAGGSSGPVGRRRT-----------RARTMDVDEVVDDLFSGRGGTGSLPQSIPLPQMICLLVDLWEAEGLFD 527
            G   EA   +   +A +P   + +A  + +VN GL  W   R+ W +  +    G  R+           RAR++DVD V++ +FS  G    LPQ +PL QMI LLVD WEA+GL+D
Sbjct:   19 GSLSEASTATERGAAESPSAGSTHASREEYVNSGLKLWSERRREWQSKNNQSEGGGTRSEPPPARSQLPKRARSVDVDHVIESIFSTTGDA-RLPQPVPLSQMIDLLVDFWEADGLYD 135
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BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Match: A0A7S2E517_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E517_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.510e-14
Identity = 45/104 (43.27%), Postives = 56/104 (53.85%), Query Frame = 3 
Query:  294 FVNEGLLRWERERKAWLAGGS-------SGPVGRRRTRARTMDVDEVVDDLFS-------------GRGGTG--------SLPQSIPLPQMICLLVDLWEAEGL 521
            FVN GL RWE ER  WL+  S       +  V +++  A  +DVDEV+D +FS             GRGG G        S P  +PLPQM+ +LVDLWEAEGL
Sbjct:   49 FVNVGLQRWEVERARWLSSASLDETHPTNKSVQQQQRHAIELDVDEVIDCVFSNRWRQTAQQLPSGGRGGRGFHQKIDDGSFPCPVPLPQMVDILVDLWEAEGL 152
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BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Match: A0A7S2XR72_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XR72_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.110e-12
Identity = 43/106 (40.57%), Postives = 58/106 (54.72%), Query Frame = 3 
Query:  276 ENAPTQ-FVNEGLLRWERERKAWLA--GGSSGPVGRRRTR-----ARTMDVDEVVDDLFSGR-----------GGT-----GSLPQSIPLPQMICLLVDLWEAEGL 521
            EN+ ++ +VN GLL WE+ RK WL    GS G   ++        A  +DVDE++D +FS R           G T     G+    +PLPQM+ +LVDLWEAEGL
Sbjct:   19 ENSESETYVNTGLLHWEKGRKHWLRKKAGSVGEEDKKEEEGEERAAINIDVDEIIDIIFSNRWRVTSPSNSLPGKTTETARGTFAHPVPLPQMVDILVDLWEAEGL 124
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BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Match: A0A2R6QMM4_ACTCC (AT-rich interactive domain-containing protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QMM4_ACTCC)

HSP 1 Score: 67.4 bits (163), Expect = 8.150e-11
Identity = 35/98 (35.71%), Postives = 50/98 (51.02%), Query Frame = 3 
Query:  234 MSSEASAINPELLAENAPTQFVNEGLLRWERERKAWLAGGSSGPVGRRRTRARTMDVDEVVDDLFSGRGGTGSLPQSIPLPQMICLLVDLWEAEGLFD 527
            MS+    ++P     N PT+FVN GLL W + R+ W   G+ G   R +     +      + L          PQ +PLP+M+ LLVD+WE EGL+D
Sbjct:   79 MSTSNPPLDPHSSTSN-PTEFVNHGLLLWNQTRQQWT--GNKGSQNRTQVPEPKLSSSATYESLLKTNK---PFPQPVPLPEMVDLLVDVWEQEGLYD 170
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig106.818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC5_ECTSI4.490e-5283.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1E125_9STRA8.190e-1745.12Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A835Z3H3_9STRA7.160e-1644.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1D623_CYCTE7.990e-1647.56Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3KWA5_9STRA1.010e-1543.75Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A448ZS03_9STRA1.090e-1547.92Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A4D9DFS2_9STRA1.130e-1436.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2E517_9STRA3.510e-1443.27Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2XR72_9STRA2.110e-1240.57Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A2R6QMM4_ACTCC8.150e-1135.71AT-rich interactive domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig106contigS-firma_F_contig106:29201..31242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LBC5
Max annot lvl2759|Eukaryota
Evalue1.7e-53
EggNOG OGs2E6JY@1|root,2SD9A@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_004430.1
Exons3
Model size548
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig106.818.1prot_S-firma_F_contig106.818.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig106 29434..31224 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.799259-UTR-S-firma_F_contig106:29200..294331622815597.799259-UTR-S-firma_F_contig106:29200..29433Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 29201..29433 +
1696949443.0718832-UTR-S-firma_F_contig106:29200..294331696949443.0718832-UTR-S-firma_F_contig106:29200..29433Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 29201..29433 +
1622815597.8578908-UTR-S-firma_F_contig106:31224..312421622815597.8578908-UTR-S-firma_F_contig106:31224..31242Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 31225..31242 +
1696949443.1186051-UTR-S-firma_F_contig106:31224..312421696949443.1186051-UTR-S-firma_F_contig106:31224..31242Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 31225..31242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.8186276-CDS-S-firma_F_contig106:29433..295061622815597.8186276-CDS-S-firma_F_contig106:29433..29506Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 29434..29506 +
1696949443.0830855-CDS-S-firma_F_contig106:29433..295061696949443.0830855-CDS-S-firma_F_contig106:29433..29506Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 29434..29506 +
1622815597.831305-CDS-S-firma_F_contig106:30363..304361622815597.831305-CDS-S-firma_F_contig106:30363..30436Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 30364..30436 +
1696949443.0956001-CDS-S-firma_F_contig106:30363..304361696949443.0956001-CDS-S-firma_F_contig106:30363..30436Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 30364..30436 +
1622815597.847453-CDS-S-firma_F_contig106:31073..312241622815597.847453-CDS-S-firma_F_contig106:31073..31224Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 31074..31224 +
1696949443.1091747-CDS-S-firma_F_contig106:31073..312241696949443.1091747-CDS-S-firma_F_contig106:31073..31224Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 31074..31224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig106.818.1

>prot_S-firma_F_contig106.818.1 ID=prot_S-firma_F_contig106.818.1|Name=mRNA_S-firma_F_contig106.818.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=99bp
MSSEASAINPELLAENAPTQFVNEGLLRWERERKAWLAGGSSGPVGRRRT
RARTMDVDEVVDDLFSGRGGTGSLPQSIPLPQMICLLVDLWEAEGLFD*
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mRNA from alignment at S-firma_F_contig106:29201..31242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig106.818.1 ID=mRNA_S-firma_F_contig106.818.1|Name=mRNA_S-firma_F_contig106.818.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2042bp|location=Sequence derived from alignment at S-firma_F_contig106:29201..31242+ (Sphaerotrichia firma ET2_F female)
GCCTTGGTTCTACGAGCACCCACACCAGCACACTGATAAGATCTAGTCAA
CGTCCAGATAAAAGAGGTTCGCGGCTCAACAACTTTTAGAACAGAACCCG
GCGGCCGTTTCAGTAGCAAGACTTTTGCGTACCTCGACGGTCAGGTCCAG
CAGCGGCGCAGGCGAAGAGAGCGAGGTGCTCGACGGTGGGCGTGCCTTTT
CCGGCAGCAGGAGGGAAAGAAGAAGCACCAGTCATGTCTTCTGAGGCATC
GGCGATAAATCCCGAGTTGCTGGCGGAAAACGCCCCCACACAATTCGTGA
ATGAAGGTGTGTGGTTTGGCATCTCCCCGCCCGCAGGTGCCCGCATGCTG
TCATGCATGCATACGTTTTGGACCTTTTGTTATATACGGAGTAATATGCA
TAGGCGTATGTTGATGTGCCTTATCTGAGTTCCGTGTGAAGCCCTCCCGA
TCGCAATGTAGACTACAGCTCCCACTCTGAACCCAGGCTAACGTACCGGC
ACACCGGCACACCCTTGGACCGATCTTCCATCCCTGTCTGATCTCTATGT
AGTCTATGTGTCATTGCCCGCAAAGGCGGGTGCCAACACCCAACACAGCA
GCCTCACACGTCTTGACACCAGGCTCGACGAATGGTTCGAATTGCTATCC
TGGGCGTTGTCGTCGTTGTCAGCGTTGTTTGTTGTGGAGCAACAGAACTT
TGGAACACGATGTCAAGGATGCGACCAGAGAAACGGTTTTCTATGCGTTC
AGGGCGATGTTCTCAGCACAGAAAAAGTGTGTGTACACCGATGGCGTCGA
GACAGGACAATTTCGTCTTGAAAATCAACCTGTCGCGATTTTAACGGTAG
GTAGAGTTACGCGTACCAGTCTCAGAGCAGAGCCCACTTTTGTGAATGGA
ATTATCGGTCGCCGACGCTTTTCCTGGAACCATCCACCGGTGGTTTTGTT
ACTCTCATCCCATCCGCCTGCCGAGAAAGAAAGCTCGCACATCAGCTCTG
CCGCAGGTAGTCTGGACGATGCGTTGACGGCTACCATTGTACTTTGCACA
TCGCTAACAATGTATATTACGGAAGCTTTCCTCAGCCGTCACACCCCCTC
CCCCTCCGCATTATTACTTCCGCTGCATGGAACGACTCGCCACTACCGCT
GTACGCCATACAGGTCTGCTCCGGTGGGAGAGGGAGCGGAAAGCTTGGCT
TGCCGGGGGCAGCAGTGGGCCGGTGGGCAGGCGAAGGTACGTGGAGTTGC
CTGCCGTGGTTGCTGATTCTCTCCGCGGCTAGTTCACACGGTCGGTAAAA
TCCTGGGTGAAAGGCGTATGTATTACGTTCCCAAGGTTTTCGGTTTTAAC
GCTGTTTATGAGACAAGATTCAGCTTTGGCTCAATGCTTTGCAGGTTAGT
CGTTGCGATTAGTTTGAAGTTCACAGCAGTTCGCCGAATTCATATGGGTG
AAAACGGTTCTTCCGAGTAAGGTTGGCACCAAAATACTAAGCCAGCCACA
GCTGTGTTGTGGTTCAATGCTTGTGAATCGCGTAGTGCTCGTGCTCCTTG
TCCTACGTTGGAGTATTAAGTATGTACGTTGCGCCTTCGTTTTTCATGTC
TGCTCAGTTATTGCGCGTGCTCCGCGTGTTTGCCTGCTTTCAAACACGAT
AGTGTCGTAACTTCTTATGATCACGCACGATTTGTACTTTACGCTATCGG
AAAAGAGCGCGCCCACCAATGTAGTCTGTAGGGAACGCCATCGTGAATGA
ATATTATCGCACGATGGCAGCAAACGCGTGTTGGCCGCCGCTGATGTCTT
CATTCCATATTGTCGTGTTTCTTGCGCTCCGTTTGGCTCCCGACACTTGG
AAACCCACGGGCCGGTTCTTCAGAACTCGTGCGCGCACGATGGACGTGGA
TGAGGTCGTCGATGACCTCTTCTCCGGCAGAGGCGGAACCGGGAGCCTCC
CGCAATCCATCCCGCTCCCACAAATGATCTGCCTTCTGGTCGATCTCTGG
GAAGCGGAAGGGCTTTTTGACTAGTGTTGTGTTTGACGATGG
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Coding sequence (CDS) from alignment at S-firma_F_contig106:29201..31242+

>mRNA_S-firma_F_contig106.818.1 ID=mRNA_S-firma_F_contig106.818.1|Name=mRNA_S-firma_F_contig106.818.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=594bp|location=Sequence derived from alignment at S-firma_F_contig106:29201..31242+ (Sphaerotrichia firma ET2_F female)
ATGTCTTCTGAGGCATCGGCGATAAATCCCGAGTTGCTGGCGGAAAACGC
CCCCACACAATTCGTGAATGAAGATGTCTTCTGAGGCATCGGCGATAAAT
CCCGAGTTGCTGGCGGAAAACGCCCCCACACAATTCGTGAATGAAGGTCT
GCTCCGGTGGGAGAGGGAGCGGAAAGCTTGGCTTGCCGGGGGCAGCAGTG
GGCCGGTGGGCAGGCGAAGGTCTGCTCCGGTGGGAGAGGGAGCGGAAAGC
TTGGCTTGCCGGGGGCAGCAGTGGGCCGGTGGGCAGGCGAAGAACTCGTG
CGCGCACGATGGACGTGGATGAGGTCGTCGATGACCTCTTCTCCGGCAGA
GGCGGAACCGGGAGCCTCCCGCAATCCATCCCGCTCCCACAAATGATCTG
CCTTCTGGTCGATCTCTGGGAAGCGGAAGGGCTTTTTGACTAGAACTCGT
GCGCGCACGATGGACGTGGATGAGGTCGTCGATGACCTCTTCTCCGGCAG
AGGCGGAACCGGGAGCCTCCCGCAATCCATCCCGCTCCCACAAATGATCT
GCCTTCTGGTCGATCTCTGGGAAGCGGAAGGGCTTTTTGACTAG
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