mRNA_S-firma_F_contig106.813.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Match: D8LBC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC0_ECTSI) HSP 1 Score: 419 bits (1078), Expect = 8.880e-144 Identity = 228/321 (71.03%), Postives = 259/321 (80.69%), Query Frame = 1
Query: 1 QGFVHLSP-YAGRGAAEVGRRSGSTSSST---------QLARRXXXXTSRAAVSSASGGCSGVGLGRTASAAGGPLFSVEQSVDGGVMLPAADKAEEYAAFLSESIRQHLDDEWIEQECHKGIGEEVARLYLDVFRKGDADLTTLVLDVGSAMEKFDMGDAFVGAWDIANLTSDFLMEKMGAETSGCSTKAPTSLSSSSSGAFRLTSEKVAQMQADLTSDFARYRFLVDFMEGDTKWEQANTVMAIYQGYTPEDDVEEKEQGRLGIRRGWAQAFPGAAPPDLSTADGLVEALEADFPDDPDLLDGLEVIVETVYGGEAKRV 933
+GFVH P A RGA E+GR S S SS + Q+ARR AA S+S GC GR ASA G LF+V+QSVDGGVMLP A+KA+EYAAFLSESIR+HL+DEWIEQ+CHKGIGEEVARLYL F KGD D+TTLVLD+GSAME+FDMGDAFVGAWDIANL SDFLMEKMGAETSGCS KAP +L S+ S AF LTS+K QMQADLTSDFARYRFL+D MEG+T WEQANT+MA+YQGY P + EE+E GR G+RRGW+ +FPGA PPDLS+A+GLVEAL+ADFPDDPDLLDGLEVIVETVYGGEAKR+
Sbjct: 21 KGFVHHPPPCAARGATEMGRNSASRSSPSPAAQRALPLQVARRRPRAVDDAA--SSSWGCYDRNAGRGASAVG-SLFAVQQSVDGGVMLPPAEKADEYAAFLSESIREHLNDEWIEQDCHKGIGEEVARLYLAAFEKGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCSAKAPKTLPSAGSDAFCLTSDKAEQMQADLTSDFARYRFLLDLMEGNTDWEQANTIMAVYQGY-PVEGEEEEESGRPGVRRGWSASFPGATPPDLSSAEGLVEALQADFPDDPDLLDGLEVIVETVYGGEAKRL 337
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA) HSP 1 Score: 141 bits (356), Expect = 7.960e-34 Identity = 69/146 (47.26%), Postives = 94/146 (64.38%), Query Frame = 1
Query: 208 EQSVDGGVMLPAADKAEEYAAFLSESIRQHLDDEWIEQECHKGIGEEVARLYLDVFRKGDADLTTLVLDVGSAMEKFDMGDAFVGAWDIANLTSDFLMEKMGAETSGCSTKAPTSLSSSSSGAFRLTSEKVAQMQADLTSDFARYR 645
E GGV LP A ++ FL E+I+ HLD EW+ Q CH IG+EV R+YL +G DL L++DVG+ +E FDMGDAFVG WD+ANL SDF++ +MG E + CSTK P +S++ F T+E V+ +Q +L +F R R
Sbjct: 8 EGGYGGGVQLPPKQDAAVFSQFLKEAIQAHLDQEWLPQPCHTDIGQEVGRIYLSSVERGTTDLNQLIMDVGTTLESFDMGDAFVGGWDVANLVSDFMLARMGLERACCSTKLPEGISATGDTVFA-TAESVSSLQRELHGEFERPR 152
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Match: A0A7S2UZ53_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ53_9STRA) HSP 1 Score: 126 bits (316), Expect = 3.780e-30 Identity = 81/258 (31.40%), Postives = 132/258 (51.16%), Query Frame = 1
Query: 265 AAFLSESIRQHLDDEWIEQECHKGIGEEVARLYLDVFRKGDADLTTLVLDVGSAMEKFDMGDAFVGAWDIANLTSDFLMEKMGA-ETSGCSTKAPTSLSSSSSGA----------------FRLTSEKVAQMQADLTSDFARYRFLVDFMEGDTK----WEQANTVMAIYQGYTPE---------DDVEEKEQGRLGIRRGWAQAFPGAAPPDL-----STADGLVEALEADFPDDPDLLDGLEVIVETVYGGEAKRV 933
A +L ++++ HLD+EWI QECH +G +Y+ + +G + +V+ VG A+EK DMGDA+VGAWD+ANL SDFLM+++ E GCS + G + T E V + +++++ RY F +F+E W +T++A+ Y P +DVEE+ W + +P PP++ +TA +E LE D+P++PD LD L+ ++ +YG EA ++
Sbjct: 61 AEWLGKAVQTHLDEEWIAQECHAELGNVCKDVYMQLHEEGKTQIMDVVVAVGEALEKVDMGDAYVGAWDVANLCSDFLMQRLDDHEPIGCSAVSSVPFPGEEEGISSSEEEDDAVEPTALKWMFTKEAVEETTEAMSTNWRRYLFQQNFLEPSEDEAMTWPHMSTIVAMLLNYKPPTTPGGPVGTEDVEER----------WREGYP--EPPNVFLEKDNTA--FLEMLELDYPENPDDLDFLDEFIDQLYGMEAHKL 304
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Match: A0A482UQP6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UQP6_9ARCH) HSP 1 Score: 88.2 bits (217), Expect = 4.260e-17 Identity = 56/173 (32.37%), Postives = 84/173 (48.55%), Query Frame = 1
Query: 217 VDGGVMLPAADKAEEYAAFLSESIRQHLDDEWIEQECHKGIGEEVARLYLDVFRKGDADLTTLVLDVGSAMEKFDMGDAFVGAWDIANLTSDFLMEKMGAETSGC----------------------STKAPTSLSSSSSGAFRLTSEKVAQMQADLTSDFARYRFLVDFMEG 669
+D GV L ++ A FLS +++ LD E+I E H IG+ V YLD G DL +V+ VG+ +E D+ DAF+ +WDIAN SD L+ + ET C + P + S + ++V +Q +L+S FARY+ + DF+EG
Sbjct: 39 IDDGVSLNQLSNHQKEAKFLSSALKNWLDKEYIFMEVHSRIGQVVGDCYLDARLTGIDDLGHMVMQVGTRLESEDLSDAFMSSWDIANKVSDILLVLLDRETCSCVGDLSFFLDHAKQVGLLPTMLIDDEQPNATVKSIRPRLEVDIKRVRTLQRELSSAFARYQTIKDFLEG 211
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Match: A0A7S4DMC2_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DMC2_9EUKA) HSP 1 Score: 85.5 bits (210), Expect = 3.920e-16 Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 205 VEQSVDGGVMLPAADKAEEYAAFLSESIRQHLDDEWIEQECHKGIGEEVARLYLDVFRKGDADLTTLVLDVGSAMEK---FDMGDAFVGAWDIANLTSDFLMEKM 510
VE+ D + L A + AAFL SI+ LD EWI+Q+ H IG EV RLY G D+T +VL++G + FDMGDAFVG WD+AN+ D L+ ++
Sbjct: 86 VERVGDAELSLEALTDTAKDAAFLEASIQTSLDKEWIKQDIHGVIGSEVGRLYTKFRGDGVDDVTLMVLEIGGFLSDPKLFDMGDAFVGGWDVANMVGDLLIARI 190
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Match: A0A7S2TY21_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TY21_9EUKA) HSP 1 Score: 84.7 bits (208), Expect = 7.350e-16 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 205 VEQSVDGGVMLPAADKAEEYAAFLSESIRQHLDDEWIEQECHKGIGEEVARLYLDVFRKGDADLTTLVLDVGSAM---EKFDMGDAFVGAWDIANLTSDFLMEKM 510
VE+ D + L + A+FL SI+ LD EWI+Q+ H IG EV RLY +G D+T +VL++G + ++FDMGDAFVG WD+AN+ D L+ ++
Sbjct: 85 VERVGDAELSLETLTDTAKDASFLEASIQTTLDKEWIKQDIHGVIGSEVGRLYTKYRSEGINDVTLMVLEIGGFLSDPKQFDMGDAFVGGWDVANMVGDLLIARI 189
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Match: A0A7S0GRL0_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GRL0_9EUKA) HSP 1 Score: 82.8 bits (203), Expect = 3.090e-15 Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 265 AAFLSESIRQHLDDEWIEQECHKGIGEEVARLYLDVFRKGDADLTTLVLDVGSAM---EKFDMGDAFVGAWDIANLTSDFLMEKM 510
A FLS S++Q LD EWI Q+ H IG EV RLY+ +G D++ +VL++G + +KFDMGDAFV WD+AN+ D L+ ++
Sbjct: 97 AKFLSVSVQQSLDKEWIVQDVHGIIGVEVERLYVKFREEGINDVSMMVLEIGGYLADRKKFDMGDAFVSGWDVANMVGDLLLVRI 181
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Match: R1CJS6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CJS6_EMIHU) HSP 1 Score: 79.3 bits (194), Expect = 7.920e-13 Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query: 223 GGVMLPAADKAE--EYAAFLSESIRQHLDDEWIEQECHKGIGEEVARLYLDVFRKGDADLTTLVLDVGSAMEKFDMGDAFVGAWDIANLTSDFLM 501
GG L A A+ A+ + S+ LDDEWIEQE H + A+ Y D G+ D+ L++ VG MEK DMG+ FVG WD+AN+ + FLM
Sbjct: 384 GGAPLDATASADVAAVASRMVTSLATKLDDEWIEQEDHVRVASVAAQAYADAREAGEDDIGRLLMKVGGEMEKVDMGECFVGPWDVANMAAAFLM 478
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Match: A0A7S2B2L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2L4_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 9.560e-13 Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 319 QECHKGIGEEVARLYLDV-FRKGDADLTTLVLDVGSAMEKFDMGDAFVGAWDIANLTSDFLMEKMGAETSGC 531
Q+CH IG+ V Y++ K DLT++++ +G MEK DMGDAFVG WD+AN SD LM +MG ET C
Sbjct: 1 QDCHVAIGQAVGAGYIEARTSKQLDDLTSVMMYLGEVMEKTDMGDAFVGPWDVANACSDLLMARMGRETCDC 72
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Match: A0A6U2FXN0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2FXN0_HEMAN) HSP 1 Score: 76.6 bits (187), Expect = 3.400e-12 Identity = 73/248 (29.44%), Postives = 116/248 (46.77%), Query Frame = 1
Query: 226 GVMLPAADKAEEYAAFLSESIRQHLDDEWIEQECHKGIGEEVARLYLDVFRKGDADLTTLVLDVGSAMEKFDMGDAFVGAWDIANLTSDFLMEKMGAETSGCSTKAPTSLSSSSSGAFRLTS----EKVAQMQADLTSDFARYRFLVDFMEGDTKWEQANTVMAIYQGYTPEDDVEE--------KEQGRLGIRRGWAQAFPGAAPPDLSTADGLVEALEADFPDDPDLLDGLEVIVETVYGGEAKRV 933
GV LP + +E +A+LS+ +RQ LDDEWI ++ H+ IGE A Y +G + ++++V + M D+ +A VGA+DIAN +D L+ G + C T P + SS S E V+ D S F RY+FL M+G T + + G+T + ++ K+ LGI + G D + + L E L+ D + + LE ++E + G A R+
Sbjct: 81 GVQLPEGN-VKEVSAWLSDEVRQWLDDEWIPRDIHREIGEIAAGAYESARERGINEAGDILMEVANTMMGVDLYEADVGAFDIANKVTDLLLINDGRDV--CCTVQPYNAGPSSRAVASDDSVVPPEAVSWTVPD--SGFDRYQFLQQTMDGRTDASVVDRAVLESLGFTVRKEQDKTVYDASSVKDDRVLGINK-----ILG----DEESCELLQEMLKEDLEEANKDEEDLEPLIEALVGEGAFRM 314 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig106.813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig106.813.1 >prot_S-firma_F_contig106.813.1 ID=prot_S-firma_F_contig106.813.1|Name=mRNA_S-firma_F_contig106.813.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=311bp QGFVHLSPYAGRGAAEVGRRSGSTSSSTQLARRRSSATSRAAVSSASGGCback to top mRNA from alignment at S-firma_F_contig106:338..2274- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig106.813.1 ID=mRNA_S-firma_F_contig106.813.1|Name=mRNA_S-firma_F_contig106.813.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1937bp|location=Sequence derived from alignment at S-firma_F_contig106:338..2274- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig106:338..2274- >mRNA_S-firma_F_contig106.813.1 ID=mRNA_S-firma_F_contig106.813.1|Name=mRNA_S-firma_F_contig106.813.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1866bp|location=Sequence derived from alignment at S-firma_F_contig106:338..2274- (Sphaerotrichia firma ET2_F female)back to top |