mRNA_S-firma_F_contig10587.796.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10587.796.1
Unique NamemRNA_S-firma_F_contig10587.796.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10587.796.1 vs. uniprot
Match: D8LSP7_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSP7_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 6.690e-95
Identity = 162/237 (68.35%), Postives = 194/237 (81.86%), Query Frame = 1 
Query:    1 SSVLESGGPALVWLYAGTDCPQCETLLPHVEEAAGRLSSWGVSVSAVDVSKETRLRRDLSIPKGLPMMFKVYHSESTPNPYGGLPVRSEQLISIFKDARDLQKKVLSAIPDSVTSLDLE-AGSAPSSGLKAALAER--EEEFAAVLFTEAGKASPVLRVLANEVKARVSAVQARLPKRRAAAPEDEDEDGGDARREQDLLEGVIDVQGTIDSVPAFVLVDTASGKGSVYEGSVDDAK 702
            SS+L+S  PALVWLYAG DCP CET+LP VEEAA +LSSWGVSV+AVD+SKET+LRRDLSIPKGLPMMFKV+HSESTPNPYGGLPVR E+++++F+DAR LQKKVLSAIPDSV S+DLE + S PS+ LK ALAE   EE FAA+LFTEAGKASPVLRVLAN+V+ +VSAVQARL K      +++DED         +L+G +D+ GTI SVP  VL++  SG+GSVY G+VDDAK
Sbjct:   57 SSILKSNNPALVWLYAGADCPNCETILPAVEEAADKLSSWGVSVAAVDLSKETKLRRDLSIPKGLPMMFKVHHSESTPNPYGGLPVRPEEMLTMFQDARSLQKKVLSAIPDSVVSVDLEKSSSGPSTSLKEALAEGDGEEAFAAILFTEAGKASPVLRVLANQVRGKVSAVQARLAKGPTTPDDEDDEDVAQDEALAGMLKGTVDIPGTIPSVPFLVLLNKESGEGSVYGGAVDDAK 293
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10587.796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSP7_ECTSI6.690e-9568.35Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10587contigS-firma_F_contig10587:609..3879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size702
Cds size702
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10587.796.1prot_S-firma_F_contig10587.796.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10587 609..3879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.5049207-CDS-S-firma_F_contig10587:608..7261622815595.5049207-CDS-S-firma_F_contig10587:608..726Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10587 609..726 -
1696949441.5384934-CDS-S-firma_F_contig10587:608..7261696949441.5384934-CDS-S-firma_F_contig10587:608..726Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10587 609..726 -
1622815595.5240195-CDS-S-firma_F_contig10587:1057..11981622815595.5240195-CDS-S-firma_F_contig10587:1057..1198Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10587 1058..1198 -
1696949441.5465674-CDS-S-firma_F_contig10587:1057..11981696949441.5465674-CDS-S-firma_F_contig10587:1057..1198Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10587 1058..1198 -
1622815595.5456395-CDS-S-firma_F_contig10587:1923..20781622815595.5456395-CDS-S-firma_F_contig10587:1923..2078Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10587 1924..2078 -
1696949441.5545495-CDS-S-firma_F_contig10587:1923..20781696949441.5545495-CDS-S-firma_F_contig10587:1923..2078Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10587 1924..2078 -
1622815595.5686681-CDS-S-firma_F_contig10587:2492..25701622815595.5686681-CDS-S-firma_F_contig10587:2492..2570Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10587 2493..2570 -
1696949441.562524-CDS-S-firma_F_contig10587:2492..25701696949441.562524-CDS-S-firma_F_contig10587:2492..2570Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10587 2493..2570 -
1622815595.5822246-CDS-S-firma_F_contig10587:3669..38791622815595.5822246-CDS-S-firma_F_contig10587:3669..3879Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10587 3670..3879 -
1696949441.5768676-CDS-S-firma_F_contig10587:3669..38791696949441.5768676-CDS-S-firma_F_contig10587:3669..3879Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10587 3670..3879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10587.796.1

>prot_S-firma_F_contig10587.796.1 ID=prot_S-firma_F_contig10587.796.1|Name=mRNA_S-firma_F_contig10587.796.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=234bp
SSVLESGGPALVWLYAGTDCPQCETLLPHVEEAAGRLSSWGVSVSAVDVS
KETRLRRDLSIPKGLPMMFKVYHSESTPNPYGGLPVRSEQLISIFKDARD
LQKKVLSAIPDSVTSLDLEAGSAPSSGLKAALAEREEEFAAVLFTEAGKA
SPVLRVLANEVKARVSAVQARLPKRRAAAPEDEDEDGGDARREQDLLEGV
IDVQGTIDSVPAFVLVDTASGKGSVYEGSVDDAK
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mRNA from alignment at S-firma_F_contig10587:609..3879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10587.796.1 ID=mRNA_S-firma_F_contig10587.796.1|Name=mRNA_S-firma_F_contig10587.796.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3271bp|location=Sequence derived from alignment at S-firma_F_contig10587:609..3879- (Sphaerotrichia firma ET2_F female)
AGCTCCGTCCTGGAGTCCGGCGGCCCCGCGCTGGTGTGGCTGTACGCGGG
CACCGACTGCCCGCAGTGCGAGACCCTGCTGCCGCACGTCGAGGAGGCCG
CGGGGAGGCTTTCCTCGTGGGGGGTGTCGGTCTCGGCGGTGGACGTGTCC
AAGGAGACCAGGCTCAGGAGGGACCTCAGCATCCCCAAGGGGCTGCCCAT
GATGTTCAAGGTGCGCTTTTTTTTTTTTTTTTTTTTCCCTTGGCGGCCCG
GCCCGCAGGAGAGATGGCAACAGAGGCGGGAGGATATGGGAGTTTTTGTT
TTGTCGATGGTCGACTTTGACAGCGGTGGCGGTGGCGGTGGCGGTGGCGG
TGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTGGTGGGGATCGGGATT
GTTGTGGTGGTGGGAGGGGGGTTAGCATGCCTCAAGGAAGGTGTGGGGGT
GGCCTTGGAAGCCGGGTTGTCAGCCTGTTTCGCGCGCAGCAAGTCGCTCG
CTCAGAGGGCCCGCTGCCGCTGTCTGCAGAGACGCGACTACGCTCCAGGG
CGGGCAGGCGTGTGGCCGCGGCTGGTGTACCCTGTGGCACTGTACAGCAT
GCGTTGCGTTGGGGCATTCGCTGGACCAAGCGGGGGTGACGGCACTCCGT
GCACGAGGCACCGGGGTCTGTTGCACGACACTTTTCGCATTTTTTTTTTC
TTGTGTAGTGATCTTGTGTTGTGATCTTGTGGTGCGATCGCAAACAAGCT
GATCTACGTACGTACGTGCGTACGTGCGAGCTCGGCTTCCCCGGGAAAAC
AAGGCGGTGTAAGTCAACGCTGGGGGTGACGGCGCAGCGGAAGAGGACGC
GAAGAAAGGAGACGCGACTTTTTTCACATTTTCTTGTGACGCGAAACCCT
CAACCCGAACGGCGGAACGAGGATGACACGAGAGGTCTTTGCTGAGACGG
CCGTGTTTTCTCGCCGCTCCCGCGCGCTTTGCCCGTCTTTTCGCCTACGA
AGGGTCGCCAGCCTCATTTCTTACACGCATTCATGTATAACCTCATGTCG
TATCCGTAGTTTTATTTTTTTATTATTTTGCTTTTTGTTCTTTCTTTGGT
GTTCCTCAATGGCTCTTTGCGCTCGTCACGTGTTACGGCGCACAAACCAT
ACCTCATGTATCCGTAGTTTCAATTTTTTAATTTTTACTTTTTGTTCTTC
TTTGGTGTTCCTCAATGGCTCTTTGTGCTCGCCACGTGTTACGGCGCACA
AACCCTCCGGTGCCCCCTGGAACCGACGTGCCGTTTCGGCGAATCCCTGC
CACGTGCAGGTGTATCACTCGGAGAGCACGCCCAACCCCTACGGTGGACT
GCCGGTGCGGTCGGAGCAGCTCATCTCCATCTTCAAGGTATTCTACCGCA
GCAGTAGTTGTATACGACGATACTTGAGGATGTTGTAGCGGAAAGACTCT
TTTGCGAAGGCACGGTGACGTTTGCTGCTGCTGCTGCTGCTGCTGTGGTT
GTTGTTGCTCCTTGCTGCTGCTTGCTGCTGCGGCGGGAGAAACTCGCCTG
CTGGCTGCTAAACGTGCTCAAGAGGCGGCTGCTGTGTCCCCCCCTACCAA
CGTCTCTCTAAAAAACAATGTCAATCGAACAGCCTCAACCCTAATCACCT
TGGTGCCTACCAACGTCTCTCTAAAAAACAATGCCAATCGAACAGTCTCA
ACCCAAATCACCTTGGTGCCTACCAACGTCTCTCTCTAATAAACAATGTC
AATCGAACAGTTTCAACCCTAATCACCTTGTCACAAATGCCAACCGAACA
GGACGCTCGCGACCTCCAGAAGAAGGTGCTGAGCGCCATCCCAGACTCGG
TAACGTCCCTGGACCTCGAGGCGGGGTCGGCCCCATCTTCCGGCCTCAAG
GCGGCCCTGGCGGAGAGAGAGGAGGAGTTCGCGGCCGTTCTCTTCACGGA
GGCAGGGTGAGGCTGCTGGAGGAGGTGCCGGGGGGGAGTGGTGTGTAGAG
GGGTAGGGGTATAGGGGGGGGGGGGTGTACCCTGCCGACGAGCGTTGGCG
GGCTGGCGGGTGTAGCATACTACATACGTGTTGTTCGTACGAGCAGTCAT
TGCCTCGTGTATGTAGTGCCGCAAGATGACGGAGGGGGGGGGGCGTTGTT
TGGGAAGCGACACGTTCGGGGATAGGGATTTGCAGGTTTGTTTTCGTCTG
TCCGCGGGGGAGCCCTGCTGCTTGCTGTCCACTTTCCCCTCCGCCCCCGC
CTGGGTATATCAGCCCGGCTCGCCCCGCTCGTGCTCGAGGCGGTTTGGCG
CGACGTTGACTCTCGATTTTGTCGTCCGTTGGCTTTGGCGTTGCGGGGCA
AACTCCGTCTCCATCTCCATCTCCATCTTCATATCCATCTCCGTCTCCAT
CTCCATCTCCATCTCCATCTCCATCTTCATCTTCATCTCCATCTCCACCT
CTATCTCCATCTCCATCTTCATCTTCATCGCCATCTCCATCTCCATCTTC
ATCTCCACCTTTATCTCCATCTGCATCTCCATCTCCATCTCCATCTCCGT
CTCCATCTTCCCATCTTCATCTCCACCTCCATCTCCATCTTCGTCTTCAT
CTTCATCTCCATTTCCATCTCCATCTCCATCTTTATCTCCATCTCCATCT
CCATCTCCATCTCCATCTCCACCTCCATCAGGAAAGCCTCGCCGGTCCTG
CGCGTGCTGGCGAACGAGGTGAAGGCCAGGGTCTCCGCGGTGCAGGCGCG
CCTGCCGAAGAGGAGGGCGGCCGCTCCGGAGGATGAGGATGAGGATGGAG
GTGACGCACGGCGAGAACAAGAGTCCCCGGAGATGATGCTGAAAGGGTGA
GAGAGGGAGAGAGGGACACACAGAGGGGGAGAGGGGGGGGGTAGGAGGGG
GAGAGAGAGGCAGACGGGGATAGCGACAGAAGGAGAATGAGAGAGAAAGA
GGGAGAGAGAGAGAGAGTAGGAGAGAAGGGGAGAGATCATGACGCTCTGC
GGGTCTCCCATTAGCTCCTACAGCATCCCCCCCCCCCACTGGCCTGTGCT
GTCTCCAATATGTTAATGCCGCTTCATCATACCGTTGGTCTTTTCGTTCC
TACTTGGACTGACTGCTGATGCCCCCCGCCCCCACCCCCTCTCTTGGTTG
TAGCCTTCTGGAAGGCGTCATTGATGTCCAGGGGACGATCGATTCCGTCC
CCGCCTTCGTGCTGGTGGACACGGCGTCCGGGAAGGGGAGCGTCTACGAA
GGTTCCGTCGACGATGCCAAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10587:609..3879-

>mRNA_S-firma_F_contig10587.796.1 ID=mRNA_S-firma_F_contig10587.796.1|Name=mRNA_S-firma_F_contig10587.796.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1404bp|location=Sequence derived from alignment at S-firma_F_contig10587:609..3879- (Sphaerotrichia firma ET2_F female)
AGCTCCGTCCTGGAGTCCGGCGGCCCCGCGCTGGTGTGGCTGTACGCGGG
CACCGACTGCCCGCAGTGCGAGACCCTGCTGCCGCACGTCGAGGAGGCCG
CGGGGAGGCTTTCCTCGTGGGGGGTGTCGGTCTCGGCGGTGGACGTGTCC
AAGGAGACCAGGCTCAGGAGGGACCTCAGCATCCCCAAGGGGCTGCCCAT
GATGTTCAAGAGCTCCGTCCTGGAGTCCGGCGGCCCCGCGCTGGTGTGGC
TGTACGCGGGCACCGACTGCCCGCAGTGCGAGACCCTGCTGCCGCACGTC
GAGGAGGCCGCGGGGAGGCTTTCCTCGTGGGGGGTGTCGGTCTCGGCGGT
GGACGTGTCCAAGGAGACCAGGCTCAGGAGGGACCTCAGCATCCCCAAGG
GGCTGCCCATGATGTTCAAGGTGTATCACTCGGAGAGCACGCCCAACCCC
TACGGTGGACTGCCGGTGCGGTCGGAGCAGCTCATCTCCATCTTCAAGGT
GTATCACTCGGAGAGCACGCCCAACCCCTACGGTGGACTGCCGGTGCGGT
CGGAGCAGCTCATCTCCATCTTCAAGGACGCTCGCGACCTCCAGAAGAAG
GTGCTGAGCGCCATCCCAGACTCGGTAACGTCCCTGGACCTCGAGGCGGG
GTCGGCCCCATCTTCCGGCCTCAAGGCGGCCCTGGCGGAGAGAGAGGAGG
AGTTCGCGGCCGTTCTCTTCACGGAGGCAGGGACGCTCGCGACCTCCAGA
AGAAGGTGCTGAGCGCCATCCCAGACTCGGTAACGTCCCTGGACCTCGAG
GCGGGGTCGGCCCCATCTTCCGGCCTCAAGGCGGCCCTGGCGGAGAGAGA
GGAGGAGTTCGCGGCCGTTCTCTTCACGGAGGCAGGGAAAGCCTCGCCGG
TCCTGCGCGTGCTGGCGAACGAGGTGAAGGCCAGGGTCTCCGCGGTGCAG
GCGCGCCTGCCGAAGAGGAGGGCGGCCGCTCCGGAGGATGAGGATGAGGA
TGGAGGTGACGCACGGCGAGAACAAGAGAAAGCCTCGCCGGTCCTGCGCG
TGCTGGCGAACGAGGTGAAGGCCAGGGTCTCCGCGGTGCAGGCGCGCCTG
CCGAAGAGGAGGGCGGCCGCTCCGGAGGATGAGGATGAGGATGGAGGTGA
CGCACGGCGAGAACAAGACCTTCTGGAAGGCGTCATTGATGTCCAGGGGA
CGATCGATTCCGTCCCCGCCTTCGTGCTGGTGGACACGGCGTCCGGGAAG
GGGAGCGTCTACGAAGGTTCCGTCGACGATGCCAAGCCTTCTGGAAGGCG
TCATTGATGTCCAGGGGACGATCGATTCCGTCCCCGCCTTCGTGCTGGTG
GACACGGCGTCCGGGAAGGGGAGCGTCTACGAAGGTTCCGTCGACGATGC
CAAG
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