mRNA_S-firma_F_contig10580.790.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10580.790.1
Unique NamemRNA_S-firma_F_contig10580.790.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Match: A0A7S1CQR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQR3_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.180e-42
Identity = 80/183 (43.72%), Postives = 117/183 (63.93%), Query Frame = 1
Query:    1 DAFAKPYQGYCITLRYNDVEWDTDHRHREFKALHARLTEAGHGPYLPPFPSTGHK--PSMPP-----RLPGEFLDRRRVRLERYLQQLLSLPASGSSVDLLSWLGILSTSR---TDQKKSVLHLSKLQDYARPGDVLLFSCRGVLQGLQRTVTRSAWDHVGIVVLEPDTRTLHLLEVNGDGVG 519
            D+F KPY  YC+T+R++  +W    R+ +FKALH +L            PS   +  P +PP     +   EF++ RR +L+RYLQ LLS+P   +SV L+SW+G+LST+R   +D  + +LH+++LQ++ +PGDVLLF+C  VL GLQRTVTRS WDH+ IV  +  +    L+E  G+GVG
Sbjct:   45 DSFNKPYTAYCVTVRFDATQWSMWRRYNDFKALHDKLAAE---------PSVNRRALPRLPPPKHMVKRTAEFVEHRRQKLDRYLQGLLSVPEVAASVPLMSWMGVLSTARHERSDDARKLLHVTRLQEFVQPGDVLLFACNNVLSGLQRTVTRSEWDHIAIVCKQHGS-VFSLVEATGEGVG 217          
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Match: A0A662YCV3_9STRA (Ribonuclease n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YCV3_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.230e-32
Identity = 114/359 (31.75%), Postives = 167/359 (46.52%), Query Frame = 1
Query:    1 DAFAKPYQGYCITLRYNDVEWDTDHRHREFKALHARLTEAGHGPYLPPFPSTGHKPSMPPRLPGEFLDRRRVRLERYLQQLLSLPASGSSVDLLSWLGILSTSRTDQ----KKSVLHLSKLQDYARPGDVLLFSCRGVLQGLQRTVTRSAWDHVGIVVLEPDTRTLHLLEVNGDGVGCHPLVWRVRCYGGEFTNCIAVRRLEYK---CVCEQLRVQSAKFRRQSRAMAPPAPSVTSPGSSPAARPRSVGSGTVTVTSPLFEAAXXXXXXXXXXXXXXXACTCGGSMDQDAVSDKLSEFVRTLVAAALQTAGVMRPC-EASSFWPGCFASGGAASDYLVAGVSFAQEVVVDTRELSVSSA 1053
            D   + Y  Y I + +N   W    R +EF  L+ RL     G  LP  P    K +  P L G F+ RRR +LE YL+Q+L  P  GS V LLS+LG++STSR  +    +KSV+H++ L D  R GD++LFSCR     LQR  T + +DHVGIVV       L ++E   +G+  + L  R+  Y  E +N I VRR+       + +QL+    +      ++               A P+S  SG  +      EA         X      + T   S   ++ + K   F  +L A+  +  G +    ++SSFWPG F  GG    +L +GV+   E+ +D R   V  A
Sbjct:  547 DLSQRSYTNYVIDVSFNGTAWQLARRFKEFYLLNCRLKTKYPGVELPRLPP---KQAFTP-LEGIFIQRRRAQLENYLKQVLVHPVLGSDVLLLSFLGVVSTSRDRELGQSEKSVIHVTTLHDSVRCGDIVLFSCRFGASRLQRKFTGAKYDHVGIVVPGESRVLLRIMEATSEGIQVYSLKARLMAYSREVSNAIVVRRINADRTPALLDQLKQFVQRVDGNPYSIFGILHYGGESDRQVIAEPKS-SSGATSAAEETDEAYCSSSSCTSXTPSHPASPTGETSNRGESQTTKRKYFCSSLAASTWKHLGWLETTRKSSSFWPGSFEDGGGVERFLASGVTLGPEIEIDCRIAEVGLA 900          
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Match: A0A5D6Y1I1_9STRA (PX domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1I1_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.890e-30
Identity = 76/199 (38.19%), Postives = 110/199 (55.28%), Query Frame = 1
Query:    4 AFAKPYQGYCITLRYNDVEWDTDHRHREFKALHARLTEAGHGPYLPPFPSTGHKPSMPPRLPGEFLDRRRVRLERYLQQLLSLPASGSSVDLLSWLGILSTSRTDQKKSVLHLSKLQDYARPGDVLLFSCRGVLQGLQRTVTRSAWDHVGIVVLEPDTRTLHLLEVNGDGVGCHPLVW---RVRCYGGEFTNCIAVRRL 591
            A  +PY  Y + +R+ ++ W    R  +F ALHARL +A     LP  P T    +    L  +FL  R++ L  YL+ +L + +  +SV LLS+LG L    T Q++ VLHL  L  Y  PGD++LF C G + G+QR++T S WDHVG+VV      + +LLE  G+GV   PLV    R+  Y       +A+R+L
Sbjct:  228 AIERPYAVYTVEVRHGEMSWQVTRRFNDFAALHARLADAAPSAVLPELPRTKWLCA----LDDDFLLERQLELNDYLKSVLFVHSVNASVPLLSFLGAL----TLQRRDVLHLRVLNYYVAPGDLVLFRCCGPVSGIQRSMTGSEWDHVGVVVPGHSPTSFYLLEATGEGVSAFPLVSATSRLIAYSAFHVKYVALRKL 418          
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Match: A0A833T210_PHYIN (PX domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T210_PHYIN)

HSP 1 Score: 130 bits (328), Expect = 7.050e-30
Identity = 110/353 (31.16%), Postives = 160/353 (45.33%), Query Frame = 1
Query:    1 DAFAKPYQGYCITLRYNDVEWDTDHRHREFKALHARLTEAGHGPYLPPFPSTGHKPSMPPRLPGEFLDRRRVRLERYLQQLLSLPASGSSVDLLSWLGILSTSRTDQ----KKSVLHLSKLQDYARPGDVLLFSCRGVLQGLQRTVTRSAWDHVGIVVLEPDTRTLHLLEVNGDGVGCHPLVWRVRCYGGEFTNCIAVRRLEYKCVCEQLRVQSAKFRRQSRAMAPPAPSVTSPGSSPAARPRSVGSGTVTVTSPLFEAAXXXXXXXXXXXXXXXACTCGGSMDQDAVSDKLSEFVRTLVAAALQTAGVMRPC-EASSFWPGCFASGGAASDYLVAGVSFAQEVVVDTRELSV 1044
            D   + Y  Y I + +N   W    R++EF ALH +L     G  LP  P    K    P   G F++ R+ +LE +L+QLL  P + + V L+S+LG++STSR  +     KSV+H++ L D    GD+++FSCR     LQR  T S +DHVGIVV       L ++E   +G+  + L  R+  Y  E +N I VR    K   E+    +   R   R +     S+     S     R++ +     TS    A                + T       DA   +   F  +LVAAA +  G +    ++SSFWPG F  GG     L  GV+   E V+D R + V
Sbjct:  319 DLSQRAYTCYVIDVVFNGTTWQLARRYKEFDALHNQLKRKYPGTTLPGLPP---KHVFTPT-EGVFINHRKGQLEAFLKQLLLHPIASTDVLLMSFLGVVSTSRDPELGHSAKSVIHVTSLHDSVAVGDIIMFSCRFGASRLQRKFTGSKYDHVGIVVPGESRFLLRIMEATSEGIQVYSLKQRLMAYAREVSNTIIVR----KIASERTPELTETLREFVRCVDGNPYSIFGILRSTGESDRNLFNSVRVSTS----ACEEGDDGLFNTGGSSTSXTPSSPEGTDATRSQRKYFCSSLVAAAWKEVGWLHTKRKSSSFWPGSFEDGGEVERLLAPGVTLGPETVIDCRIVEV 659          
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Match: V9EZL5_PHYPR (PX domain-containing protein n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=V9EZL5_PHYPR)

HSP 1 Score: 120 bits (300), Expect = 8.010e-27
Identity = 103/354 (29.10%), Postives = 149/354 (42.09%), Query Frame = 1
Query:   16 PYQGYCITLRYNDVEWDTDHRHREFKALHARLTEAGHGPYLPPFPSTGHKPSMPPRLPGEFLDRRRVRLERYLQQLLSLPASGSSVDLLSWLGILSTSRTDQ------KKSVLHLSKLQDYARPGDVLLFSCRGVLQGLQRTVTRSAWDHVGIVVLEPDTRTLHLLEVNGDGVGCHPLVWRVRCYGGEFTNCIAVRRLEYKCVCEQLRVQSAKFRRQSRAMAPPAPSVTSPGSSPAARPRSVGSGTVTVTSPLFEAAXXXXXXXXXXXXXXXACTCGGSMDQDAVSDKLSEFVRTLVAAALQTAGVMRPC-EASSFWPGCFASGGAASDYLVA-GVSFAQEVVVDTRELSVSSA 1053
            PY  + + L + ++ W    R  EF  LH RL        LP  P T    +  P     FL +RR+ LE YL+ +  + A   SV LL +LG+LST+  D       +  +LHL  L+ Y RPGD++LF+ R  +  LQR++TRS WDHV IVV   +   L LLE  GDGV   PL  R+  Y         +R+L    +              SRA                            V + L E                     G     +  S   + F   L+A A ++ G++    EA++FWPG F+ G      L   G S + E+++D + L V++A
Sbjct:  127 PYAVFKMKLSFENLRWRIARRFSEFVELHTRLKILVEESMLPRLPPTAWLSATEP----SFLFQRRLMLENYLKGMFMVGALQDSVPLLVFLGVLSTTYFDHVALRSYRSQILHLQVLEFYTRPGDLILFNGRAKVSVLQRSITRSEWDHVAIVVPPSEGEYLQLLEATGDGVTLTPLTARLLAYSAFHVRYFVLRKLRTPLL--------------SRA----------------------------VVNDLLERFTAEVEGLCYGLSFRKILYTG---QVEQRSQNSTYFCSELIAEAYKSLGIISSSSEANNFWPGSFSPGDFVDTELARHGASLSPEIIIDCKLLEVATA 431          
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Match: A0A024GTB5_9STRA (PX domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GTB5_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.060e-17
Identity = 108/383 (28.20%), Postives = 160/383 (41.78%), Query Frame = 1
Query:   19 YQGYCITLRYNDVEWDTDHRHREFKALHARLTEA-GHGPYLPPFPSTGHKP-----SMPP-----RLPGEFLDRRRVRLERYLQQLLSL---PASGSSVDLLSWLGILSTSR-TDQKKSVLHLS--KLQDYARPGDVLLFSCRGVLQGLQRTVTRSAWDHVGIVVLEPDTRTLHLLEVNGDGVGCHPLVWRVRCYGGEFTNCIAVRRLEYKCVCEQLR-----VQSAKFRRQSRAMAPPAPSVTSPGSSPAARPRSVGSGTVTVTSPLFEAAXXXXXXXXXXXXXXXACTCGGSMDQDAVSDKLSEFVRT--------------LVAAALQTAGVMRPCEASS-FWPGCFASGGAASDYLVAGVSFAQEVVVDTRELSVSSAI 1056
            Y  Y I + +  + W    R+++F  LH  L E  G    L    S+   P     + PP     RL  + + RRR  LE YL++LL     P+    V +LS+LG++ST + ++    VL  S   L      GD++LFSCR      QR VTRS +DHVGIV+       L LLE  G+G+  +PL  R+  Y  E +  IA+R    K   E  +     V SA+ +  S                            +++   L ++                      +      S K+S+ VRT              LVA+AL+  G +R   + S FWPG F   G     L  G++  +E+ VD R + V++AI
Sbjct:  399 YTLYQIRVTFGRMTWQVSRRYKDFDQLHYLLKEKYGEAFSLAFTDSSISSPVKATVNFPPKQIFGRLESDTIKRRRAMLENYLKRLLQAQKPPSLSQDVLVLSFLGVVSTPKLSNASVGVLSTSIDALDKQIGYGDIVLFSCRFGSSICQRKVTRSRFDHVGIVIPGLRGDNLRLLEATGEGIKVYPLKARLMAYAREVSERIAIRSFLVKRDSESAQRLMAFVASAEGKAYS---------------------------ILSIFQGLNKSDRYLQQKEVYDEEKRLPSFVSQNHTSTTQSVKMSKDVRTKETSSKRKNYFCSSLVASALKDMGWLRTQRSCSYFWPGSFEEDGEIEKSLHPGITLGKEIDVDCRLVEVATAI 754          
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Match: W2Q2W6_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2Q2W6_PHYPN)

HSP 1 Score: 83.2 bits (204), Expect = 1.220e-14
Identity = 74/264 (28.03%), Postives = 109/264 (41.29%), Query Frame = 1
Query:  286 WLGILSTSRTDQ------KKSVLHLSKLQDYARPGDVLLFSCRGVLQGLQRTVTRSAWDHVGIVVLEPDTRTLHLLEVNGDGVGCHPLVWRVRCYGGEFTNCIAVRRLEYKCVCEQLRVQSAKFRRQSRAMAPPAPSVTSPGSSPAARPRSVGSGTVTVTSPLFEAAXXXXXXXXXXXXXXXACTCGGSMDQDAVSDKLSEFVRTLVAAALQTAGVMRPC-EASSFWPGCFASGGAASDYLVA-GVSFAQEVVVDTRELSVSSA 1053
            +LG+LST+  D       +  +LHL  L+ Y RPGD++LF+ R  +  LQR++TRS WDHV IVV   +   L LLE  GDGV   PL  R+  Y         +R+L    +              SRA                            V + L E                     G     +  S   + F   L+A A ++ G++    EA++FWPG F+ G      L   G S + E+++D + L V++A
Sbjct:   40 FLGVLSTTYFDHVALRSYRSQILHLQVLEFYTRPGDLILFNGRAKVSVLQRSITRSEWDHVAIVVPPSEGEYLQLLEATGDGVTLTPLTARLLAYSAFHVRYFVLRKLRTPLL--------------SRA----------------------------VVNDLLERFTAEVEGLCYGLSFRKILYTG---QVEQRSQNSTYFCSELIAEAYKSLGIISSSSEANNFWPGSFSPGDFVDTELARHGASLSPEIIIDCKLLEVATA 258          
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Match: A0A7S2C4N4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4N4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.790e-13
Identity = 57/184 (30.98%), Postives = 85/184 (46.20%), Query Frame = 1
Query:   46 YNDVEWDTDHRHREFKALHARL-----TEAGHGPYLPPFPSTGHK-----PSMPPRLPG----------EFLDRRRVRLERYLQQLLSLPASGSSVDLLSWLGILSTSRT-------------------------DQKKSVLHLSKLQDYARPGDVLLFSCRGVLQGLQRTVTRSAWDHVGIVV 462
            +  +EW    R+ EF  LH +L     ++AG GP        G +     P   PRLPG          + ++ RRV L  YL+ +L  P + SS+ +LS+LG++STSR                          D  + V+H+ +L  Y   GD++LF     + G+QR VT + WDHV +VV
Sbjct:   51 FKALEWQVWRRYNEFVELHRKLCAQHQSQAGGGPSPSGTNIAGTQGRFVDPEKLPRLPGKAIFGRSFNEDVVEARRVALAAYLKAVLDDPHALSSIHVLSFLGLMSTSREPETVHTKNNGLHNHSSSTNNKEEVDDALRPVIHIGQLDSYLEWGDLVLFKSDNAVSGIQRAVTSAEWDHVALVV 234          
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Match: A0A7S4D7C4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7C4_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 8.630e-10
Identity = 74/274 (27.01%), Postives = 105/274 (38.32%), Query Frame = 1
Query:  370 GDVLLFSCRGVLQGLQRTVTRSAWDHVGIVVLEPDTRTLHLLEVNGDGVGCHPLVWRVRCYGGEFTNCIAVRRLEYK---CVCEQLRVQSAKF--------------RRQSRAM--------------APPAPSVTSPGSSPAARPRSVG--------------SGTVTVTSPLFEAAXXXXXXXXXXXXXXXACTCGGSMDQDAVSDKLSEFVRTLVAAALQTAGVMRPCEA-SSFWPGCFASGGAASDYLVAGVSFAQEVVVDTRELSVSSA 1053
            GD++LF C      +QR +T + WDHV ++V +     L L+E  G+GV   P+  R+R YG +FT  +A+R+L+      + E++    AK               R Q  A               A      +  G +  AR +  G              SGT         A                      S       +  S F   LVAA LQ  GV+RP     SFWPG FASGG      + G SF  E+++D   L + +A
Sbjct:    8 GDLVLFKCNTGAARVQRRLTGAEWDHVAVIVQDTKGGALLLMEATGEGVRSWPVCQRLRAYGSDFTQYMALRKLQCNKTMSMYEKMLEFVAKAVGRPYGFGLGRLLNRNQEEASQXXXXXXXXXXQERAKQDIDNSRKGQNGDAREQEQGXXXXXXXXXXXXXNSGTA--------AGAEDQAGAQQGGRGGSVSPAPSSQGSRLEGEGESYFCSELVAACLQHMGVVRPGRGCGSFWPGAFASGGDLDKECMPGTSFGDEIIIDCHSLEIGNA 273          
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Match: H3HC99_PHYRM (Uncharacterized protein n=21 Tax=Phytophthora TaxID=4783 RepID=H3HC99_PHYRM)

HSP 1 Score: 65.9 bits (159), Expect = 5.780e-8
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 1
Query:  370 GDVLLFSCRGVLQGLQRTVTRSAWDHVGIVVLEPDTRTLHLLEVNGDGVGCHPLVWRVRCYGGEFTNCIAVRRL 591
            GD++LF+ R  + G+QR++TRS WDHV IVV   D   L LLE  GDGV   PL  R+  Y         +R+L
Sbjct:   21 GDLILFNSRAKVSGIQRSMTRSEWDHVAIVVPSRDNSNLQLLEATGDGVTLTPLTARLLAYSTFHVRYFVLRKL 94          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10580.790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7S1CQR3_9STRA2.180e-4243.72Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A662YCV3_9STRA3.230e-3231.75Ribonuclease n=2 Tax=Nothophytophthora sp. Chile5 ... [more]
A0A5D6Y1I1_9STRA4.890e-3038.19PX domain-containing protein n=1 Tax=Pythium brass... [more]
A0A833T210_PHYIN7.050e-3031.16PX domain-containing protein n=1 Tax=Phytophthora ... [more]
V9EZL5_PHYPR8.010e-2729.10PX domain-containing protein n=14 Tax=Phytophthora... [more]
A0A024GTB5_9STRA2.060e-1728.20PX domain-containing protein n=1 Tax=Albugo candid... [more]
W2Q2W6_PHYPN1.220e-1428.03Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A7S2C4N4_9STRA3.790e-1330.98Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4D7C4_HETAK8.630e-1027.01Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
H3HC99_PHYRM5.780e-844.59Uncharacterized protein n=21 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10580contigS-firma_F_contig10580:497..1822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog65071.PYU1_T006234
PFAMsPX
Max annot lvl121069|Pythiales
Evalue6.1e-37
EggNOG OGsKOG2528@1|root,KOG2528@2759|Eukaryota,1MFNT@121069|Pythiales
DescriptionRibonuclease. Source PGD
COG categoryT
Hectar predicted targeting categoryother localisation
Exons4
Model size1071
Cds size1071
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10580.790.1prot_S-firma_F_contig10580.790.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10580 497..1822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.9406672-CDS-S-firma_F_contig10580:496..6851622815594.9406672-CDS-S-firma_F_contig10580:496..685Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10580 497..685 -
1696949441.2675843-CDS-S-firma_F_contig10580:496..6851696949441.2675843-CDS-S-firma_F_contig10580:496..685Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10580 497..685 -
1622815594.950118-CDS-S-firma_F_contig10580:835..11641622815594.950118-CDS-S-firma_F_contig10580:835..1164Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10580 836..1164 -
1696949441.2786365-CDS-S-firma_F_contig10580:835..11641696949441.2786365-CDS-S-firma_F_contig10580:835..1164Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10580 836..1164 -
1622815594.96269-CDS-S-firma_F_contig10580:1221..15821622815594.96269-CDS-S-firma_F_contig10580:1221..1582Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10580 1222..1582 -
1696949441.2940989-CDS-S-firma_F_contig10580:1221..15821696949441.2940989-CDS-S-firma_F_contig10580:1221..1582Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10580 1222..1582 -
1622815594.9747164-CDS-S-firma_F_contig10580:1630..18221622815594.9747164-CDS-S-firma_F_contig10580:1630..1822Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10580 1631..1822 -
1696949441.3104272-CDS-S-firma_F_contig10580:1630..18221696949441.3104272-CDS-S-firma_F_contig10580:1630..1822Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10580 1631..1822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10580.790.1

>prot_S-firma_F_contig10580.790.1 ID=prot_S-firma_F_contig10580.790.1|Name=mRNA_S-firma_F_contig10580.790.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=357bp
DAFAKPYQGYCITLRYNDVEWDTDHRHREFKALHARLTEAGHGPYLPPFP
STGHKPSMPPRLPGEFLDRRRVRLERYLQQLLSLPASGSSVDLLSWLGIL
STSRTDQKKSVLHLSKLQDYARPGDVLLFSCRGVLQGLQRTVTRSAWDHV
GIVVLEPDTRTLHLLEVNGDGVGCHPLVWRVRCYGGEFTNCIAVRRLEYK
CVCEQLRVQSAKFRRQSRAMAPPAPSVTSPGSSPAARPRSVGSGTVTVTS
PLFEAAAGGGGRALTAAASSSACTCGGSMDQDAVSDKLSEFVRTLVAAAL
QTAGVMRPCEASSFWPGCFASGGAASDYLVAGVSFAQEVVVDTRELSVSS
AITNHS*
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mRNA from alignment at S-firma_F_contig10580:497..1822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10580.790.1 ID=mRNA_S-firma_F_contig10580.790.1|Name=mRNA_S-firma_F_contig10580.790.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1326bp|location=Sequence derived from alignment at S-firma_F_contig10580:497..1822- (Sphaerotrichia firma ET2_F female)
GACGCGTTTGCCAAGCCGTACCAGGGGTACTGCATCACGCTGCGGTACAA CGACGTGGAGTGGGACACGGACCACCGCCACCGGGAGTTCAAGGCGCTGC ACGCGCGGTTGACGGAGGCGGGGCACGGCCCGTACCTGCCGCCGTTCCCC AGCACCGGCCACAAGCCGTCCATGCCGCCCCGGCTCCCTGGCGTCACCAA GTCCTCCAGCCGTGTGGCGCTGGAGAAGCAGCGGGAGGAGGAGTTTCTGG ACCGGCGCCGGGTGCGGCTGGAGCGCTACCTCCAGCAGCTGCTGTCCCTG CCCGCCAGCGGCTCCAGCGTGGACCTCCTGTCGTGGCTGGGCATCCTGTC CACCAGCCGCACGGACCAAAAAAAGTCCGTCCTGCACTTGTCCAAGCTGC AGGACTACGCCCGCCCGGGGGACGTCCTCCTGTTTTCCTGCAGGGGGGTC CTGCAGGGCCTGCAGCGCACGGTGACCCGCAGCGCGTGGGACCACGTGGG GATTGTGGTGTTGGAGCCGGACACCCGCACCCTGCACCTCCTGGAGGTGA ATGGGGACGGCGTGGGGTGCCACCCCCTGGTGTGGCGTGTGCGGTGCTAC GGTGGGTGTGCGCTTGTGTGCGTACTTGTCAGTGCAAGTCTGTGACGGCT TCCCGCAGGTGGTGAGTTCACAAACTGCATCGCGGTGCGCCGGCTGGAGT ACAAGTGCGTGTGTGAGCAGCTCCGTGTGCAGTCCGCCAAGTTCCGGCGG CAGTCCCGGGCGATGGCGCCCCCCGCGCCGTCCGTGACCTCCCCGGGGTC GTCTCCGGCGGCTCGCCCCCGCTCCGTTGGCAGCGGCACCGTCACCGTCA CATCGCCGCTGTTTGAGGCGGCAGCGGGCGGGGGTGGGCGTGCGTTGACC GCCGCCGCGTCCAGCTCCGCGTGCACGTGCGGCGGCAGCATGGACCAGGA CGCCGTGTCGGACAAGCTGTCCGAGTTTGTGCGGACGGTGAAGGGGCGGG GCTACCAGCTGAACTTGTCCAAGCTGTGGAAGGGGCGGCGGCGCCCGGCG CCGACCACTCTCCCCACTGCCACCACGCCGGACATGGACGCGCCGCCGTC CACCCCAGCCGTCGCCGACGCCCTGTTTTGCAGTGAGCTGGTGGCAGCCG CGCTCCAAACCGCGGGCGTCATGCGGCCGTGCGAGGCGTCGTCGTTCTGG CCGGGGTGCTTCGCGTCGGGGGGGGCGGCGTCGGACTACCTGGTTGCCGG CGTCAGCTTTGCGCAGGAGGTTGTGGTGGACACCCGGGAGCTCAGCGTCA GCAGTGCTATCACGAACCACTCGTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10580:497..1822-

>mRNA_S-firma_F_contig10580.790.1 ID=mRNA_S-firma_F_contig10580.790.1|Name=mRNA_S-firma_F_contig10580.790.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2142bp|location=Sequence derived from alignment at S-firma_F_contig10580:497..1822- (Sphaerotrichia firma ET2_F female)
GACGCGTTTGCCAAGCCGTACCAGGGGTACTGCATCACGCTGCGGTACAA
CGACGTGGAGTGGGACACGGACCACCGCCACCGGGAGTTCAAGGCGCTGC
ACGCGCGGTTGACGGAGGCGGGGCACGGCCCGTACCTGCCGCCGTTCCCC
AGCACCGGCCACAAGCCGTCCATGCCGCCCCGGCTCCCTGGCGACGCGTT
TGCCAAGCCGTACCAGGGGTACTGCATCACGCTGCGGTACAACGACGTGG
AGTGGGACACGGACCACCGCCACCGGGAGTTCAAGGCGCTGCACGCGCGG
TTGACGGAGGCGGGGCACGGCCCGTACCTGCCGCCGTTCCCCAGCACCGG
CCACAAGCCGTCCATGCCGCCCCGGCTCCCTGGCGAGTTTCTGGACCGGC
GCCGGGTGCGGCTGGAGCGCTACCTCCAGCAGCTGCTGTCCCTGCCCGCC
AGCGGCTCCAGCGTGGACCTCCTGTCGTGGCTGGGCATCCTGTCCACCAG
CCGCACGGACCAAAAAAAGTCCGTCCTGCACTTGTCCAAGCTGCAGGACT
ACGCCCGCCCGGGGGACGTCCTCCTGTTTTCCTGCAGGGGGGTCCTGCAG
GGCCTGCAGCGCACGGTGACCCGCAGCGCGTGGGACCACGTGGGGATTGT
GGTGTTGGAGCCGGACACCCGCACCCTGCACCTCCTGGAGGTGAATGGGG
ACGGCGTGGGGTGCCACCCCCTGGTGTGGCGTGTGCGGTGCTACGGAGTT
TCTGGACCGGCGCCGGGTGCGGCTGGAGCGCTACCTCCAGCAGCTGCTGT
CCCTGCCCGCCAGCGGCTCCAGCGTGGACCTCCTGTCGTGGCTGGGCATC
CTGTCCACCAGCCGCACGGACCAAAAAAAGTCCGTCCTGCACTTGTCCAA
GCTGCAGGACTACGCCCGCCCGGGGGACGTCCTCCTGTTTTCCTGCAGGG
GGGTCCTGCAGGGCCTGCAGCGCACGGTGACCCGCAGCGCGTGGGACCAC
GTGGGGATTGTGGTGTTGGAGCCGGACACCCGCACCCTGCACCTCCTGGA
GGTGAATGGGGACGGCGTGGGGTGCCACCCCCTGGTGTGGCGTGTGCGGT
GCTACGGTGGTGAGTTCACAAACTGCATCGCGGTGCGCCGGCTGGAGTAC
AAGTGCGTGTGTGAGCAGCTCCGTGTGCAGTCCGCCAAGTTCCGGCGGCA
GTCCCGGGCGATGGCGCCCCCCGCGCCGTCCGTGACCTCCCCGGGGTCGT
CTCCGGCGGCTCGCCCCCGCTCCGTTGGCAGCGGCACCGTCACCGTCACA
TCGCCGCTGTTTGAGGCGGCAGCGGGCGGGGGTGGGCGTGCGTTGACCGC
CGCCGCGTCCAGCTCCGCGTGCACGTGCGGCGGCAGCATGGACCAGGACG
CCGTGTCGGACAAGCTGTCCGAGTTTGTGCGGACGGTGGTGAGTTCACAA
ACTGCATCGCGGTGCGCCGGCTGGAGTACAAGTGCGTGTGTGAGCAGCTC
CGTGTGCAGTCCGCCAAGTTCCGGCGGCAGTCCCGGGCGATGGCGCCCCC
CGCGCCGTCCGTGACCTCCCCGGGGTCGTCTCCGGCGGCTCGCCCCCGCT
CCGTTGGCAGCGGCACCGTCACCGTCACATCGCCGCTGTTTGAGGCGGCA
GCGGGCGGGGGTGGGCGTGCGTTGACCGCCGCCGCGTCCAGCTCCGCGTG
CACGTGCGGCGGCAGCATGGACCAGGACGCCGTGTCGGACAAGCTGTCCG
AGTTTGTGCGGACGCTGGTGGCAGCCGCGCTCCAAACCGCGGGCGTCATG
CGGCCGTGCGAGGCGTCGTCGTTCTGGCCGGGGTGCTTCGCGTCGGGGGG
GGCGGCGTCGGACTACCTGGTTGCCGGCGTCAGCTTTGCGCAGGAGGTTG
TGGTGGACACCCGGGAGCTCAGCGTCAGCAGTGCTATCACGAACCACTCG
TGACTGGTGGCAGCCGCGCTCCAAACCGCGGGCGTCATGCGGCCGTGCGA
GGCGTCGTCGTTCTGGCCGGGGTGCTTCGCGTCGGGGGGGGCGGCGTCGG
ACTACCTGGTTGCCGGCGTCAGCTTTGCGCAGGAGGTTGTGGTGGACACC
CGGGAGCTCAGCGTCAGCAGTGCTATCACGAACCACTCGTGA
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