mRNA_S-firma_F_contig10550.763.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10550.763.1
Unique NamemRNA_S-firma_F_contig10550.763.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Match: A0A5D6XP65_9STRA (5'-3' exoribonuclease n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP65_9STRA)

HSP 1 Score: 528 bits (1361), Expect = 4.600e-174
Identity = 284/568 (50.00%), Postives = 371/568 (65.32%), Query Frame = 1
Query:    4 EEMARRGMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWKHFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIMLGLATHEAHFTLLREEVRFGRQAVMKCHRCGQAGHSVAQCTGVRAARVKKGDHGELDGTSA-AKPKPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIIDDFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYITDAGNIDRSKVDVLLGKIGDIEDEIFRRRKASEEQAARKRESMDRRAKEQRARERARAAPVVAPTFSHAGMVGSAPPADPNAGASAAELNKKLADRLKAELFGDDDESPTTMLAAAEHLKLMVRTTSYDRSKREDVVDHVRLGTPGWKQRFYEEKFGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFASDLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESPYRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFTAEEKRRNA-LGKELLFVAS 1701
            E M   G  VP K+  A+DSNVITPGT FM +LA Y+R +++DR++++  WK   VIFSD+ VPGEGEHK+M+F+R QRS P ++PN  H+LHGLDADLIMLGLATHE +F++LREEV FG+Q   K  R  +   +V    GV   + K+GD GE DG    +  KPL+ L IATLREYL  EF  L   LPFT+D ER+IDDFVF+CFFVGNDFLPHLPSLDIR+GA+D LI +Y  LLP +GGY+TDAGN+D S+VDV+L ++G +ED IF+RR   +++  R+R+S  R + E+R +  A AA                          A E+ KK   RL  ++   D +        A   ++     +     RE+V D VRLG PGWK R+Y +K   +D      ++++F  Y++GL WV KYYY G  SW+W+YP+HYAPFASDL N+DRF I F  G+PFRP EQLMGV P  S+HA+P   + LM +AESP  DFYP+D  +DPNGKAM W+W+ LLPFIDE RLL A+K+     T  EK+RN   G+E++F  S
Sbjct:  119 EYMRALGHKVPGKQEKAWDSNVITPGTKFMSKLAKYLRFYVRDRINNNPAWKSIKVIFSDAGVPGEGEHKLMSFIRVQRSQPGYDPNQHHVLHGLDADLIMLGLATHEVNFSILREEVLFGKQ---KFEREREKQKTVLDANGVPDHKRKRGDFGEHDGDLLPSDQKPLQFLHIATLREYLRIEFEPLALALPFTYDFERVIDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLILIYAKLLPAMGGYLTDAGNVDLSRVDVILAEVGAVEDIIFQRRALKQDENERRRKS--RLSNEKRDQLAAAAAKT-----------------------DAVEIVKKR--RLGKDVIDADKKYGGLTAEEAVKARIKENVEAQLEKYREEVQDVVRLGEPGWKTRYYSDKLKADDIEHGGGREKVFQTYIEGLCWVMKYYYSGCASWQWFYPFHYAPFASDLRNIDRFTISFTEGQPFRPFEQLMGVFPSGSSHAIPKPFRWLMSEAESPIIDFYPKDIPVDPNGKAMPWLWVVLLPFIDEPRLLAAMKTGNEQLTDAEKKRNERFGREIVFYHS 656          
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Match: A0A1V9ZV87_9STRA (5'-3' exoribonuclease n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZV87_9STRA)

HSP 1 Score: 521 bits (1343), Expect = 1.420e-171
Identity = 291/570 (51.05%), Postives = 373/570 (65.44%), Query Frame = 1
Query:    1 QEEMARRGMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWKHFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIMLGLATHEAHFTLLREEVRFGRQAVMKCH-RCGQAGHSVAQCTGVRAARVKKGDHGELDGTSAAKP-KPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIIDDFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYITD-AGNIDRSKVDVLLGKIGDIEDEIFRRRKASE-EQAARKRESMDRRAKEQRARERARAAPVVAPTFSHAGMVGSAPPADPNAGASAAE-LNKKLADRLKAELFGDDDESPTTMLAAAEHLKLMVRTTSYDRSKREDVVDHVRLGTPGWKQRFYEEKFGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFASDLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESPYRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFTAEEKRRNA-LGKELLF 1692
            +E M   G  VP+K  P +DSNVITPGT FM +LA Y+R +++DR++   GWK+  V+FSD+ VPGEGEHK+M ++R QR  PD+NPN  H+LHGLDADLIMLGLATHEAHF++LREEV FG+    K   +     + VA      AA+ K+G+ GE D    A   KP + L I+TLREYL  EF  L G LPF +D ERIIDDFVF+CFFVGNDFLPHLP LDIR+GA+D L+ +Y  LLP+LGGY+T+  G ID SK DVLL +IG IED IF+RR A+E EQA R+++ +  + +E+ A   AR   V        G    A P D  AG +A E L +++ ++  A+L                           D+ K E++ D VRLG PGWK R+YE+K    D  +   ++ +F  Y++GL WV +YYY G  SW+W+YP+HYAPFASDL N+DRF+I+F+LG+PF P EQLMGV P  S HALP     LM D ESP  DFYPE+  +DPNGKAM W+W+ALLPFIDE RLL A++      +  EK+RNA  GKELLF
Sbjct:  138 REYMELMGHKVPAKHTP-WDSNVITPGTKFMAKLAKYMRFYVRDRINTCPGWKNIKVVFSDAGVPGEGEHKLMTYIRDQRCQPDYNPNLHHVLHGLDADLIMLGLATHEAHFSVLREEVLFGKAKYEKMKAKVRLDANGVADTD---AAKRKRGEFGEHDAAMIASDLKPFQFLHISTLREYLAIEFEPLAGTLPFQYDFERIIDDFVFLCFFVGNDFLPHLPCLDIRDGAVDYLLLVYAKLLPSLGGYLTNPGGEIDLSKADVLLAEIGSIEDTIFQRRMANEREQAVRQKQRLKYQEREKLAAAAARGDAVAVKRQKGPGGAVVAAPTDAYAGMTATEALKQRIKEKESAKL---------------------------DKYK-EEIQDTVRLGEPGWKTRYYEDKLKAHDIETGGGRELVFKTYIEGLCWVMRYYYTGCASWQWFYPFHYAPFASDLKNIDRFEIKFDLGRPFCPFEQLMGVFPADSKHALPKPYHWLMTDPESPIIDFYPEEIPMDPNGKAMPWLWVALLPFIDEKRLLAAMEPITAQLSEAEKKRNARFGKELLF 675          
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Match: K3X1Z0_GLOUD (5'-3' exoribonuclease n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1Z0_GLOUD)

HSP 1 Score: 519 bits (1337), Expect = 1.980e-171
Identity = 276/570 (48.42%), Postives = 373/570 (65.44%), Query Frame = 1
Query:    4 EEMARRGMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWKHFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIMLGLATHEAHFTLLREEVRFGRQAVMKCHRCGQAGHSVAQCTGVRAARVKKGDHGELDGTSA-AKPKPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIIDDFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYITDAGNIDRSKVDVLLGKIGDIEDEIFRRRKASEEQAARKRESMDRRAKEQRARERARAAPVVAPTFSHAGMVGSAPPADPNAGASAAELNKKLADRLKAELFGDDDESPTTMLAAAEHLKLMVRTTSYDRSK--REDVVDHVRLGTPGWKQRFYEEKFGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFASDLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESPYRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFTAEEKRRNA-LGKELLFVAS 1701
            E M   G +VPSK+  A+DSNVITPGT FM +LA Y+R +I+DR++++  WK   VIFSD+ VPGEGEHK+M ++R QRS P ++PN  H+LHGLDADLIMLGLATHE  F++LREEV FG+Q   K  R  +   +V    GV   + K+GD GE DG    +  KPL+ L IATLREYL+ EF  L   LPF +D ER+IDDFVF+CFFVGNDFLPHLPSLDIR+GA+D LI +Y  LLP +GGY+TD G +D ++VDV+L ++G +ED IF+RR   +++  R+R+S                      ++     + +A   +      A E+ KK   R+  ++   D +     L A E +K  ++ +   + +  R++V D VRLG PGWK R+Y +K   +D      ++++F  Y++GL WV KYYY G  SW+W+YP+HYAPFASDL N+DRF I F+ G+PFRP EQLMGV P  S+HA+P   + LM + ESP  DFYP+D  +DPNGKAM W+W+ LLPFIDE+RLLEA++      T  EK+RN   G+E++F  S
Sbjct:  139 EYMKALGHSVPSKQEKAWDSNVITPGTKFMSKLAKYMRFYIRDRINNNPAWKSMKVIFSDAGVPGEGEHKLMQYIRVQRSQPGYDPNQHHVLHGLDADLIMLGLATHEVKFSILREEVLFGKQ---KYEREREKQKTVLDANGVPDHKRKRGDFGEHDGDLIPSDQKPLQFLHIATLREYLKIEFEPLSLVLPFEYDFERVIDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLILIYAKLLPAMGGYLTDTGEVDLARVDVILAEVGAVEDVIFQRRALKQDENERRRKSRI--------------------SYEKRDQIAAAAAKN-----DAVEIVKKR--RIDKDVIAADKKYGG--LTAEEAVKARIKESVETQLEKYRDEVQDVVRLGEPGWKTRYYSDKMKADDIEHGGGREKVFQSYIEGLCWVMKYYYSGCASWQWFYPFHYAPFASDLRNIDRFTISFDEGQPFRPFEQLMGVFPSGSSHAIPKPYRWLMSEEESPIIDFYPKDIPVDPNGKAMPWLWVVLLPFIDESRLLEAMQPGNAQLTEAEKKRNERFGREIVFFHS 676          
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Match: A0A813D061_9DINO (XRN2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813D061_9DINO)

HSP 1 Score: 528 bits (1360), Expect = 5.810e-171
Identity = 305/613 (49.76%), Postives = 379/613 (61.83%), Query Frame = 1
Query:   22 GMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWKHFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIMLGLATHEAHFTLLREEVRFGRQAVMKCHRCGQAGHSVAQCTGVRAARVKKGDHGELDGTSAAKPKPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIIDDFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYITDAGNIDRSKVDVLLGKIGDIEDEIFRRRKASEEQAARKRESMDRRAKEQRARERARAAPVVAPTFSHAGMVGS--------------------------------APPADPNAGASAAELN--------KKLADRLKAELFGDDDES-PTTMLAAAEH-----------LKLMVRTTSYDRSKREDVVDHVRLGTPGWKQRFYEEKFGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFASDLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESPYRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFTAEEKRRNALGKELLFVASE 1704
            G +VP      FD NVITPGTPFMDRLA Y+  F+  + +  A W+  +VI S ++ PGEGEHKIM+F+R +R    ++PNTRH+LHGLDADLIMLGLATHE HFT+LREEV   R+A  K  R GQ               V  G H           KPL +L IATLREYL+ EF S+  RLPF +DLER+IDDFVF+CFFVGNDFLPHLPSLDIREGA+DLLI LYK +LP+LGGY+T  G+++ + VDVLL ++G +ED IFR+RK+SE+++AR RE+ DR   E +A+E A  A V A   + A   G+                                A PA    GA A ++         +  A  L +    D D   PT  +  AE            +K  ++  S D    E VVD VRLG  GWK R+Y  K G E G+S + ++EL  EYV GL WVF YYY+GVPSWKWYYP HYAPFASDLV+V +F   F LG PF PL+QLMGVLPP SAHALPPAC  LM D +S    +YP DF +DPNGK MTW W+ LLPFI E+ L++A+ S   +FT EEKRRN LG +++FV S+
Sbjct:   89 GKSVPPASKARFDHNVITPGTPFMDRLAEYLNIFVMHKQNTCAAWRALTVILSAADAPGEGEHKIMDFIRRERQAEGYDPNTRHVLHGLDADLIMLGLATHEVHFTILREEVLTPREAKRKASR-GQT--------------VDDGAH-----------KPLFMLHIATLREYLDAEFASVASRLPFPYDLERVIDDFVFLCFFVGNDFLPHLPSLDIREGAVDLLINLYKQVLPSLGGYLTHEGDVNLALVDVLLQRLGLLEDTIFRQRKSSEDRSARWREARDR---ELKAKEAAAVAEVQAAAGAGASTTGAPSNQSAAAALRAGLRGTKRGRPKGESSSQAAPARPAKAERGADAEDVGAAGPAVDGEVRASPLPSPTSDDGDTPLPTPKVLTAEERTQAHEEFSEAVKQEIKQASID----ESVVDEVRLGEVGWKDRYYMSKLGPERGSSPTARRELVKEYVTGLQWVFAYYYKGVPSWKWYYPEHYAPFASDLVDVAQFKASFTLGSPFTPLQQLMGVLPPYSAHALPPACAALMKDPKSSVAKYYPTDFAMDPNGKKMTWQWLVLLPFIKESELVKALDSVSDTFTEEEKRRNTLGNDMIFVHSQ 668          
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Match: A0A3R6WQE1_9STRA (5'-3' exoribonuclease n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WQE1_9STRA)

HSP 1 Score: 513 bits (1320), Expect = 9.150e-171
Identity = 286/583 (49.06%), Postives = 378/583 (64.84%), Query Frame = 1
Query:    1 QEEMARRGMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWKHFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIMLGLATHEAHFTLLREEVRFGRQAVMKCHRCGQAGHSVAQCTGVR-AARVKKGDHGELDGTSAAKP-KPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIIDDFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYIT-DAGNIDRSKVDVLLGKIGDIEDEIFRRRKASEEQAARKRESMDRRAKE--QRARERARAAPV----VAPTFSHAGMVG----SAPPADPNAGASAAELNKKLADRLKAELFGDDDESPTTMLAAAEHLKLMVRTTSYDRSK--REDVVDHVRLGTPGWKQRFYEEKFGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFASDLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESPYRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFTAEEKRRNA-LGKELLFVAS 1701
            +E M   G   P K+ P +DSNVITPGT FM +L+ Y+R +++DRM++   WKHF V+FSD++VPGEGEHK+M+++R QRS P ++PN  H+LHGLDADLIMLGLATHEA F++LREEV FGR    K  +  Q         GV  A + K+G+ GE D +S A   KPL+ L ++ LREYL  EF  L  RLPF +D ERIIDDFVF+CFFVGNDFLPHLP +DIR+GA+D L+ LY  LLP+LGGY+T   G ID  K DV+L ++G +E+ IF+RR A E      RE+M R A++  Q  RE+   + +    VA T    G  G    +A   D +  A  A  + +     K     +  E+    +     LKL V+     + +  ++++ D+VRLG PGWK R+YE+K    D  +   ++++F  YV+GL WV +YYY GV SW+W+YP+HYAPFASDL N+DRF I F++G+PF P EQLMGV P  S HA+P   Q L+ DAESP  DFYPED  +DPNGKA  W+W+ LLPFIDE+RLL+A++      T  EK+RN   GKELLF  S
Sbjct:  138 REYMETLGQKPPPKQTP-WDSNVITPGTKFMAKLSKYMRFYVRDRMNNCPAWKHFKVVFSDASVPGEGEHKLMSYIRTQRSQPGYDPNQHHVLHGLDADLIMLGLATHEAKFSVLREEVLFGRAKFEKDQKANQF---KLDANGVPDAIKRKRGEFGEHDSSSTASTLKPLQFLHVSILREYLAIEFEPLQARLPFPYDFERIIDDFVFLCFFVGNDFLPHLPCMDIRDGAVDYLLLLYAKLLPSLGGYLTLPGGEIDLEKADVILAEVGTVEEVIFQRRVAKE------RENMMREARQLSQSQREKVLGSTMKDEAVAVTKRLKGSAGKDIVTAVVDDDDGSADVANDDAEEGTPAKVLTPAEQREAKYRHMTPEMALKLRVKEKEEKKLEQLKQEIKDNVRLGEPGWKTRYYEDKLKAHDIETGGGREKVFQSYVEGLCWVMRYYYSGVASWQWFYPFHYAPFASDLKNIDRFKISFDVGQPFCPFEQLMGVFPADSRHAIPKPYQWLLTDAESPIIDFYPEDIPVDPNGKAQPWLWVVLLPFIDESRLLDAMRPINDKLTDAEKKRNERYGKELLFFHS 710          
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Match: H3GSI3_PHYRM (5'-3' exoribonuclease n=21 Tax=Phytophthora TaxID=4783 RepID=H3GSI3_PHYRM)

HSP 1 Score: 517 bits (1332), Expect = 5.470e-170
Identity = 284/570 (49.82%), Postives = 372/570 (65.26%), Query Frame = 1
Query:    4 EEMARRGMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWKHFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIMLGLATHEAHFTLLREEVRFGRQAVMKCHRCGQAGHSVAQCTGVRAARVKKGDHGELDGTSAAKP-KPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIIDDFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYITDAGNIDRSKVDVLLGKIGDIEDEIFRRRKASEEQAARKRESMDRRAKEQRARERARAAPVVAPTFSHAGMVGSAPPADPNAGASAAELNKKLADRLKAELFGDDDESPTTMLAAAEHLKLMVRTTSYDRSK--REDVVDHVRLGTPGWKQRFYEEKFGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFASDLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESPYRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFTAEEKRRNA-LGKELLFVAS 1701
            E M+  G  VPSK+   +DSNVITPGT FM +LA ++R +I+DR++++A WK   V+ SD+ VPGEGEHK+M +VR QRS PD++PN  H+LHGLDADLIMLGLATHE  F++LREEV FG+Q   +  +  Q    V    GV   R K+G+ GE D    A   KPL+ L IATLREYL+ EF  L   LPF +D ER+IDDFVF+CFFVGNDFLPHLPSLDIR+GA+D LI +Y  LLP +GGYI D G+++ S+VDV+L ++G +ED IF+RR   + +  R+R+S  R + E+R                    +G+A   D     SA E+ KK   R+  +    D +     L A E +K  V+ +   + +  RE+V D VRLG PGWK R+Y +K   +D      ++ +F  Y++GL WV +YYY G  SW+W+YP+HYAPFASDL N+DRF+I+FE G PF P EQLMGV P  S HA+P   + LM D ESP  DFYP+D  +DPNGKAM W+W+ LLPFIDE RLLEA+K      T  E++RNA  GKE++F  S
Sbjct:  139 EYMSAMGHKVPSKQEKPWDSNVITPGTKFMAKLAKHLRFYIRDRVNNNATWKSIKVVLSDAGVPGEGEHKLMEYVRVQRSQPDYDPNQHHVLHGLDADLIMLGLATHEVKFSILREEVLFGKQKYERERQKEQ--QMVLDANGVSGKR-KRGEFGEHDADLVASDLKPLQYLHIATLREYLQVEFEPLSRVLPFEYDFERVIDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLILIYAKLLPAMGGYIADGGHVNLSRVDVILAEVGQVEDVIFQRRAIKQAENERRRKS--RLSNEKR------------------DQIGAAAAKD-----SATEILKKR--RIDKDTIAADKKYGG--LTAEEAVKARVKESVEKKLEQYREEVQDIVRLGEPGWKTRYYSDKLKADDIEVGGGRERVFHAYIEGLCWVMRYYYTGCASWQWFYPFHYAPFASDLRNIDRFEIKFEEGLPFHPFEQLMGVFPAGSGHAIPKPYRWLMSDTESPIIDFYPKDIPVDPNGKAMPWLWVVLLPFIDEGRLLEAMKEPNQKLTEAEQKRNARFGKEVVFFHS 676          
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Match: A0A3R7HZP6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HZP6_9STRA)

HSP 1 Score: 518 bits (1335), Expect = 5.460e-168
Identity = 275/568 (48.42%), Postives = 367/568 (64.61%), Query Frame = 1
Query:    4 EEMARRGMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWKHFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIMLGLATHEAHFTLLREEVRFGRQAVMKCHRCGQAGHSVAQCTGVRAARVKKGDHGELDGTSAAKP-KPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIIDDFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYITDAGNIDRSKVDVLLGKIGDIEDEIFRRRKASEEQAARKRESMDRRAKEQRARERARAAPVVAPTFSHAGMVGSAPPADPNAGASAAELNKKLADRLKAELFGDDDESPTTMLAAAEHLKLMVRTTSYDRSKREDVVDHVRLGTPGWKQRFYEEKFGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFASDLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESPYRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFTAEEKRRNA-LGKELLFVAS 1701
            E M+  G  VPSK+  A+DSNVITPGT FM +LA Y+R +I+DR++++A WK   +I SD+ VPGEGEHK+M ++R QR+ P ++PN  H+LHGLDADLIMLGLATHE  F++LREEV FG+Q   +  +  Q   +V    GV   + K+G+ GE D    A   KPL+ L IATLREYL+ EF  L   LPF +D ER++DDFVF+CFFVGNDFLPHLPSLDIR+GA+D LI +Y  LLP +GGY+T+ G++D S+VDV+L ++G +ED IF+RR   + +  R R+S    AK                       +G+A   D     SA E+ KK   R+ + +   D +        A   ++           RE+V D VRLG PGWK R+Y +K   +D  +   ++ +F  Y++GL WV KYYY G  SW+W+YP+HYAPFASDL N+DRF+I+F+ G PF P EQLMGV P  S HA+P + + LM D ESP  DFYP+D  +DPNGKAM W+W+ LLPFIDE+RLLEA+ +     T  EK+RN+  GKE++F  S
Sbjct:  139 EYMSAMGHKVPSKQEKAWDSNVITPGTKFMAKLAKYLRFYIRDRVNNNAAWKSIKIILSDAGVPGEGEHKLMQYIREQRAQPGYDPNQHHVLHGLDADLIMLGLATHEVKFSILREEVLFGKQKYERERQREQ--QTVLDSNGVPLNKRKRGEFGEHDADLIASDLKPLQYLHIATLREYLQVEFEPLSRVLPFPYDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLILIYAKLLPAMGGYLTNGGDVDLSRVDVILAEVGQVEDVIFQRRALKQTENERIRKSRLTNAKRD--------------------QIGAAAAKD-----SAVEIVKKR--RIDSTIIAADKKYGGMTPQEAVKARVKESVEKQLEKHREEVQDVVRLGEPGWKTRYYSDKLKADDIETGGGRERVFHSYIEGLCWVMKYYYTGCASWQWFYPFHYAPFASDLRNIDRFEIKFDEGLPFHPFEQLMGVFPAGSGHAIPKSYRWLMSDPESPIIDFYPKDIPVDPNGKAMPWLWVVLLPFIDESRLLEAMDAPNQKLTEAEKKRNSRFGKEVVFFHS 677          
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Match: A0A024TZJ4_9STRA (5'-3' exoribonuclease n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZJ4_9STRA)

HSP 1 Score: 513 bits (1320), Expect = 7.400e-168
Identity = 286/583 (49.06%), Postives = 378/583 (64.84%), Query Frame = 1
Query:    1 QEEMARRGMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWKHFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIMLGLATHEAHFTLLREEVRFGRQAVMKCHRCGQAGHSVAQCTGVR-AARVKKGDHGELDGTSAAKP-KPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIIDDFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYIT-DAGNIDRSKVDVLLGKIGDIEDEIFRRRKASEEQAARKRESMDRRAKE--QRARERARAAPV----VAPTFSHAGMVG----SAPPADPNAGASAAELNKKLADRLKAELFGDDDESPTTMLAAAEHLKLMVRTTSYDRSK--REDVVDHVRLGTPGWKQRFYEEKFGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFASDLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESPYRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFTAEEKRRNA-LGKELLFVAS 1701
            +E M   G   P K+ P +DSNVITPGT FM +L+ Y+R +++DRM++   WKHF V+FSD++VPGEGEHK+M+++R QRS P ++PN  H+LHGLDADLIMLGLATHEA F++LREEV FGR    K  +  Q         GV  A + K+G+ GE D +S A   KPL+ L ++ LREYL  EF  L  RLPF +D ERIIDDFVF+CFFVGNDFLPHLP +DIR+GA+D L+ LY  LLP+LGGY+T   G ID  K DV+L ++G +E+ IF+RR A E      RE+M R A++  Q  RE+   + +    VA T    G  G    +A   D +  A  A  + +     K     +  E+    +     LKL V+     + +  ++++ D+VRLG PGWK R+YE+K    D  +   ++++F  YV+GL WV +YYY GV SW+W+YP+HYAPFASDL N+DRF I F++G+PF P EQLMGV P  S HA+P   Q L+ DAESP  DFYPED  +DPNGKA  W+W+ LLPFIDE+RLL+A++      T  EK+RN   GKELLF  S
Sbjct:  138 REYMETLGQKPPPKQTP-WDSNVITPGTKFMAKLSKYMRFYVRDRMNNCPAWKHFKVVFSDASVPGEGEHKLMSYIRTQRSQPGYDPNQHHVLHGLDADLIMLGLATHEAKFSVLREEVLFGRAKFEKDQKANQF---KLDANGVPDAIKRKRGEFGEHDSSSTASTLKPLQFLHVSILREYLAIEFEPLQARLPFPYDFERIIDDFVFLCFFVGNDFLPHLPCMDIRDGAVDYLLLLYAKLLPSLGGYLTLPGGEIDLEKADVILAEVGTVEEVIFQRRVAKE------RENMMREARQLSQSQREKVLGSTMKDEAVAVTKRLKGSAGKDIVTAVVDDDDGSADVANDDAEEGTPAKVLTPAEQREAKYRHMTPEMALKLRVKEKEEKKLEQLKQEIKDNVRLGEPGWKTRYYEDKLKAHDIETGGGREKVFQSYVEGLCWVMRYYYSGVASWQWFYPFHYAPFASDLKNIDRFKISFDVGQPFCPFEQLMGVFPADSRHAIPKPYQWLLTDAESPIIDFYPEDIPVDPNGKAQPWLWVVLLPFIDESRLLDAMRPINDKLTDAEKKRNERYGKELLFFHS 710          
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Match: A0A8K1CPD8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPD8_PYTOL)

HSP 1 Score: 510 bits (1314), Expect = 6.430e-167
Identity = 276/565 (48.85%), Postives = 366/565 (64.78%), Query Frame = 1
Query:   10 MARRGMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWKHFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIMLGLATHEAHFTLLREEVRFGRQAVMKCHRCGQAGHSVAQCTGVRAARVKKGDHGELDGTSAAKP-KPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIIDDFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYITDAGNIDRSKVDVLLGKIGDIEDEIFRRRKASEEQAARKRESMDRRAKEQRARERARAAPVVAPTFSHAGMVGSAPPADPNAGASAAELNKKLADRLKAELFGDDDESPTTMLAAAEHLKLMVR-TTSYDRSK-REDVVDHVRLGTPGWKQRFYEEKFGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFASDLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESPYRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFTAEEKRRNA-LGKELLF 1692
            M   G  VP K+   +DSNVITPGT FM +LA Y+R +I+DR++++  WK   VIFSD+  PGEGEHK+M+++R QR+ P ++PN  H+LHGLDADLIMLGLATHE  F++LREEV FG+    +  +  Q    +    GV + + K+G+ GE D  + A   KPL+ L IATLREYL+ EF  L   LPF +D ER++DDFVF+CFFVGNDFLPHLPSLDIR+GA+D LI +Y  LLP LGGY+T+AG ++ S+VDV+L ++G +ED IF+RR  S +QA  +R    R   +Q+ R                  +G+A   +      A E+ KK   R+  E+   D E     L+A E +K  ++ T      K RE+V D VRLG PGWK R+Y +K   ED      ++++F  Y++GL WV +YYY G  SW W+YP+HYAPFASDL N+DRF I F  G+PFRP EQLMGV P  S+HA+P   + LM + ESP  DFYP+D  +DPNGKAM W+W+ LLPFIDE RLL+A+       T  EK+RN   G+EL+F
Sbjct:  141 MRAMGHKVPEKQSEGWDSNVITPGTKFMSKLAKYMRFYIRDRINNNPAWKSIKVIFSDAGCPGEGEHKLMSYIRDQRAQPGYDPNQHHVLHGLDADLIMLGLATHEVKFSILREEVLFGKAKFERERQ--QQSQMMLDANGVPSQKRKRGEFGEHDADAIASDLKPLQFLHIATLREYLQIEFEPLSQALPFPYDFERVVDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLILIYAKLLPALGGYLTEAGEVNLSRVDVILAEVGAVEDVIFQRR--SMKQAENERRRKQRLTNDQKDR------------------IGAAAAKE-----GAVEVVKKR--RIDKEVI--DHEKKYGGLSAEEAVKARIKDTVELQLEKYREEVQDVVRLGEPGWKTRYYSDKLKAEDIEHGGGREKVFQTYIEGLCWVMRYYYHGCASWNWFYPFHYAPFASDLRNIDRFQITFNQGQPFRPFEQLMGVFPAGSSHAIPKPYRWLMSEEESPIIDFYPKDIPVDPNGKAMPWLWVVLLPFIDEQRLLDAMAEPNQQLTEAEKKRNERYGRELVF 674          
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Match: A0A662XBV5_9STRA (5'-3' exoribonuclease n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBV5_9STRA)

HSP 1 Score: 510 bits (1314), Expect = 7.900e-167
Identity = 275/570 (48.25%), Postives = 365/570 (64.04%), Query Frame = 1
Query:    4 EEMARRGMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWKHFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIMLGLATHEAHFTLLREEVRFGRQAVMKCHRCGQAGHSVAQCTGVRAARVKKGDHGELDGTSAAKP-KPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIIDDFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYITDAGNIDRSKVDVLLGKIGDIEDEIFRRRKASEEQAARKRESMDRRAKEQRARERARAAPVVAPTFSHAGMVGSAPPADPNAGASAAELNKKLADRLKAELFGDDDESPTTMLAAAEHLKLMVRTTSYDRSK--REDVVDHVRLGTPGWKQRFYEEKFGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFASDLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESPYRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFT-AEEKRRNALGKELLFVAS 1701
            E M+  G  VPSK+  A+DSNVITPGT FM +LA Y+R +I+DR++++A WK   ++ SD+ VPGEGEHK+M ++R QR+ P ++PN  H+LHGLDADLIMLGLATHE  F++LREEV FG+Q   +  +  Q    V    GV   + K+G+ GE D    A   KPL+ L IATLREYL+ EF  L   LPF +D ER+IDDFVF+CFFVGNDFLPHLPSLDIR+GA+D LI +Y  LLP +GGY+TD+G +D S+VDV+L ++G +ED IF+RR   + +  R+R+                       T      + +A   D     SA E+ KK   R+ + +   D +     + A E +K  V+ +  ++ +  R +V D VRLG PGWK R+Y +K   +D  +   ++ +F  Y++GL WV +YYY G  SW+W+YP+HYAPFASDL N+DRF I FE G PF P EQLMGV P  S HA+P   + LM D+ESP  DFYP+D  +DPNGKAM W+W+ LLPFIDE RLLEA+       T AE KR    GKE++F  S
Sbjct:  139 EYMSALGHKVPSKQEKAWDSNVITPGTKFMAKLAKYMRFYIRDRVNNNAAWKSLKIVLSDAGVPGEGEHKLMQYIRVQRAQPGYDPNQHHVLHGLDADLIMLGLATHEVKFSILREEVLFGKQKYERERQKEQ--QVVLDANGVPQNKRKRGEFGEHDDDLIASDLKPLQYLHIATLREYLQVEFEPLSQVLPFEYDFERVIDDFVFLCFFVGNDFLPHLPSLDIRDGALDFLILIYAKLLPAMGGYLTDSGEVDLSRVDVILAEVGQVEDVIFQRRAVKQAENERRRKFRI--------------------TNEKKDQIAAAAAKD-----SAVEIVKKR--RIDSTIIAADKKYGG--MTAEEAVKARVKESVENQLEQYRTEVQDVVRLGEPGWKTRYYSDKLKADDIENGGGRERVFHSYIEGLCWVMRYYYTGCASWQWFYPFHYAPFASDLRNIDRFTITFEEGLPFHPFEQLMGVFPAGSGHAIPKPYRWLMSDSESPIIDFYPKDIPVDPNGKAMPWLWVVLLPFIDEERLLEAMGEPNQKLTEAERKRNERFGKEVVFFHS 677          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10550.763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6XP65_9STRA4.600e-17450.005'-3' exoribonuclease n=1 Tax=Pythium brassicum Ta... [more]
A0A1V9ZV87_9STRA1.420e-17151.055'-3' exoribonuclease n=1 Tax=Achlya hypogyna TaxI... [more]
K3X1Z0_GLOUD1.980e-17148.425'-3' exoribonuclease n=1 Tax=Globisporangium ulti... [more]
A0A813D061_9DINO5.810e-17149.76XRN2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A3R6WQE1_9STRA9.150e-17149.065'-3' exoribonuclease n=1 Tax=Aphanomyces invadans... [more]
H3GSI3_PHYRM5.470e-17049.825'-3' exoribonuclease n=21 Tax=Phytophthora TaxID=... [more]
A0A3R7HZP6_9STRA5.460e-16848.42Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A024TZJ4_9STRA7.400e-16849.065'-3' exoribonuclease n=1 Tax=Aphanomyces invadans... [more]
A0A8K1CPD8_PYTOL6.430e-16748.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XBV5_9STRA7.900e-16748.255'-3' exoribonuclease n=2 Tax=Nothophytophthora sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10550contigS-firma_F_contig10550:151..2464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog36331.EPrPI00000013276
PFAMsXRN_N
Max annot lvl121069|Pythiales
Evalue1.41e-176
EggNOG OGsCOG5049@1|root,KOG2044@2759|Eukaryota,1MG77@121069|Pythiales
Description5'-3' exoribonuclease. Source PGD
COG categoryAL
Hectar predicted targeting categoryother localisation
Exons7
Model size1704
Cds size1695
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10550.763.1prot_S-firma_F_contig10550.763.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10550 160..2464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.4086735-UTR-S-firma_F_contig10550:150..1591622815591.4086735-UTR-S-firma_F_contig10550:150..159Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10550 151..159 +
1696949439.0062587-UTR-S-firma_F_contig10550:150..1591696949439.0062587-UTR-S-firma_F_contig10550:150..159Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10550 151..159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.4206316-CDS-S-firma_F_contig10550:159..4771622815591.4206316-CDS-S-firma_F_contig10550:159..477Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 160..477 +
1696949439.0178971-CDS-S-firma_F_contig10550:159..4771696949439.0178971-CDS-S-firma_F_contig10550:159..477Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 160..477 +
1622815591.4307406-CDS-S-firma_F_contig10550:539..6541622815591.4307406-CDS-S-firma_F_contig10550:539..654Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 540..654 +
1696949439.0264394-CDS-S-firma_F_contig10550:539..6541696949439.0264394-CDS-S-firma_F_contig10550:539..654Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 540..654 +
1622815591.4430523-CDS-S-firma_F_contig10550:704..8861622815591.4430523-CDS-S-firma_F_contig10550:704..886Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 705..886 +
1696949439.0350947-CDS-S-firma_F_contig10550:704..8861696949439.0350947-CDS-S-firma_F_contig10550:704..886Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 705..886 +
1622815591.4525466-CDS-S-firma_F_contig10550:936..10581622815591.4525466-CDS-S-firma_F_contig10550:936..1058Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 937..1058 +
1696949439.0451195-CDS-S-firma_F_contig10550:936..10581696949439.0451195-CDS-S-firma_F_contig10550:936..1058Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 937..1058 +
1622815591.4641652-CDS-S-firma_F_contig10550:1115..14431622815591.4641652-CDS-S-firma_F_contig10550:1115..1443Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 1116..1443 +
1696949439.0547497-CDS-S-firma_F_contig10550:1115..14431696949439.0547497-CDS-S-firma_F_contig10550:1115..1443Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 1116..1443 +
1622815591.4772692-CDS-S-firma_F_contig10550:1760..23211622815591.4772692-CDS-S-firma_F_contig10550:1760..2321Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 1761..2321 +
1696949439.0660465-CDS-S-firma_F_contig10550:1760..23211696949439.0660465-CDS-S-firma_F_contig10550:1760..2321Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 1761..2321 +
1622815591.490236-CDS-S-firma_F_contig10550:2395..24641622815591.490236-CDS-S-firma_F_contig10550:2395..2464Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 2396..2464 +
1696949439.0790677-CDS-S-firma_F_contig10550:2395..24641696949439.0790677-CDS-S-firma_F_contig10550:2395..2464Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10550 2396..2464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10550.763.1

>prot_S-firma_F_contig10550.763.1 ID=prot_S-firma_F_contig10550.763.1|Name=mRNA_S-firma_F_contig10550.763.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=565bp
MARRGMAVPSKKPPAFDSNVITPGTPFMDRLAAYVRHFIKDRMSHHAGWK
HFSVIFSDSNVPGEGEHKIMNFVRFQRSHPDFNPNTRHILHGLDADLIML
GLATHEAHFTLLREEVRFGRQAVMKCHRCGQAGHSVAQCTGVRAARVKKG
DHGELDGTSAAKPKPLELLSIATLREYLEGEFRSLDGRLPFTFDLERIID
DFVFMCFFVGNDFLPHLPSLDIREGAIDLLIALYKALLPTLGGYITDAGN
IDRSKVDVLLGKIGDIEDEIFRRRKASEEQAARKRESMDRRAKEQRARER
ARAAPVVAPTFSHAGMVGSAPPADPNAGASAAELNKKLADRLKAELFGDD
DESPTTMLAAAEHLKLMVRTTSYDRSKREDVVDHVRLGTPGWKQRFYEEK
FGREDGNSRSFKQELFTEYVKGLMWVFKYYYEGVPSWKWYYPYHYAPFAS
DLVNVDRFDIRFELGKPFRPLEQLMGVLPPRSAHALPPACQRLMCDAESP
YRDFYPEDFKLDPNGKAMTWMWIALLPFIDETRLLEAVKSAEPSFTAEEK
RRNALGKELLFVASE
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mRNA from alignment at S-firma_F_contig10550:151..2464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10550.763.1 ID=mRNA_S-firma_F_contig10550.763.1|Name=mRNA_S-firma_F_contig10550.763.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2314bp|location=Sequence derived from alignment at S-firma_F_contig10550:151..2464+ (Sphaerotrichia firma ET2_F female)
CAGGAGGAAATGGCCCGCCGTGGCATGGCCGTCCCGTCGAAGAAGCCCCC TGCGTTTGACTCCAACGTCATCACGCCGGGCACGCCGTTCATGGACCGCC TGGCGGCGTACGTCCGGCACTTCATTAAGGACCGCATGTCCCACCACGCC GGCTGGAAGCACTTCTCCGTCATTTTCTCCGACTCCAACGTTCCCGGCGA AGGCGAGCACAAAATCATGAACTTTGTGCGCTTCCAGCGCTCCCATCCGG ACTTTAACCCCAACACCCGCCACATCCTGCACGGCTTGGATGCCGACCTC ATCATGCTGGGGCTCGCCACACACGAGGTGCGTGCGCAGCTGCATGTTCG TGTGCAGCCATGCTGACCCCCCTCGTGTGTGACTCTCAGGCTCACTTCAC GCTGCTGCGTGAGGAGGTGCGGTTTGGGCGGCAGGCGGTCATGAAGTGCC ACCGGTGTGGCCAGGCGGGGCACAGCGTTGCGCAGTGCACGGGGGTGCGT GCTGGTCGGAAGTTGGAGTTCGTGACTCGTTTAAGTCCCCCCCGCCACAG GAAGCACGGGTGAAGAAAGGCGACCACGGTGAGTTGGACGGCACGTCAGC CGCCAAGCCCAAGCCGCTGGAGTTGCTGAGCATTGCCACCCTGCGGGAGT ACTTGGAGGGCGAGTTCCGGTCACTGGACGGCCGCCTGCCGTTCACCTTT GACCTGGAGCGCATCATCGACGACTTTGTGTTCATGGTGTGTGTGTTCAG GTTGCCTTGTTTCTTGCCGCCACCCCCCCCCCCCAGTGTTTTTTTGTTGG CAACGATTTCCTCCCCCACTTACCGTCCCTGGACATCCGTGAGGGCGCCA TTGACCTCCTGATTGCCCTGTACAAAGCCCTGCTGCCCACCTTGGGTGGC TACATCACGTACGGTCATTTGATGGCGTGCACGTGTTGCACCCACCGCTA ACCCCCCCCCCCCAGCGACGCCGGCAACATTGACCGCAGCAAGGTGGACG TGCTGCTGGGCAAGATAGGGGATATTGAGGACGAGATTTTCCGGCGCCGA AAAGCCAGCGAGGAGCAGGCGGCCCGCAAGCGGGAGTCCATGGACCGTAG GGCCAAGGAGCAGCGGGCCAGAGAGCGGGCCAGGGCCGCCCCTGTTGTGG CGCCAACGTTTTCGCACGCTGGCATGGTGGGGTCGGCGCCCCCCGCGGAC CCCAACGCCGGCGCGTCCGCCGCGGAGCTGAACAAGAAGCTGGCTGACCG CCTGAAGGCGGAGCTGTTTGGAGACGACGACGAGTCACCGACGGTGGGTG GTTGTCATCGCTGCCGGCCGTGTGCTTCACCCCCACAAAATCGTGCTCAG GGCACGGAGGAAACCAAGGCAGAGGAGCCCAAGGCGGCGCCACCGCCACC GCTGCCCACGAAAGCCAGCAGGAAGCGCGGGCGCGAGGAGGACACGTCCT CACCGCTGGCGCCCAGCCCAGACACGGAGAAACTGGAGGAGCTGGTGGAG GAAGAGGGCGCAGACTTGGTGGGGTGTTTGCAAGAGTGGGCCCTGTGAGA CGTGTGCACTCACCCGTCGACTGTGTGCGTGTGTGCGTGCAGGAGGGCGC CGACGTGGAGACCATGCTGGCCGCCGCCGAGCACCTCAAGCTCATGGTGC GGACGACGTCGTACGACCGCAGCAAGCGGGAGGACGTCGTGGACCACGTC CGGCTGGGGACGCCGGGGTGGAAGCAGCGGTTCTACGAGGAAAAGTTTGG GAGGGAGGACGGCAACTCCCGGTCGTTCAAGCAGGAGCTGTTCACGGAGT ACGTCAAGGGCCTCATGTGGGTGTTCAAGTACTACTACGAGGGCGTGCCG TCGTGGAAGTGGTACTACCCGTACCACTACGCGCCCTTTGCGTCGGACTT GGTCAACGTTGACCGCTTCGACATTAGGTTTGAGCTGGGGAAGCCGTTCC GCCCCCTGGAGCAGCTCATGGGCGTCCTGCCGCCGCGCAGCGCCCACGCC CTCCCCCCCGCCTGCCAGCGCCTCATGTGCGACGCTGAATCCCCGTACCG AGACTTTTACCCGGAGGACTTCAAGCTGGACCCCAACGGAAAGGCCATGA CGTGGATGTGGATTGCGCTGCTGCCCTTCATTGACGAAACCCGCTTGCTG GAGGCTGTCAAGTCCGCGGAGGTGCGTTGTCGCCGCTGTGTGTGTGTGTG TGTGCTGGCGCTGGTGAGATGACGCGTGTGCCGTCATTTGCGCAGCCGTC CTTCACTGCCGAAGAAAAGCGGCGCAACGCCCTGGGCAAGGAGCTACTGT TCGTGGCGTCCGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10550:151..2464+

>mRNA_S-firma_F_contig10550.763.1 ID=mRNA_S-firma_F_contig10550.763.1|Name=mRNA_S-firma_F_contig10550.763.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3390bp|location=Sequence derived from alignment at S-firma_F_contig10550:151..2464+ (Sphaerotrichia firma ET2_F female)
ATGGCCCGCCGTGGCATGGCCGTCCCGTCGAAGAAGCCCCCTGCGTTTGA
CTCCAACGTCATCACGCCGGGCACGCCGTTCATGGACCGCCTGGCGGCGT
ACGTCCGGCACTTCATTAAGGACCGCATGTCCCACCACGCCGGCTGGAAG
CACTTCTCCGTCATTTTCTCCGACTCCAACGTTCCCGGCGAAGGCGAGCA
CAAAATCATGAACTTTGTGCGCTTCCAGCGCTCCCATCCGGACTTTAACC
CCAACACCCGCCACATCCTGCACGGCTTGGATGCCGACCTCATCATGCTG
GGGCTCGCCACACACGAGATGGCCCGCCGTGGCATGGCCGTCCCGTCGAA
GAAGCCCCCTGCGTTTGACTCCAACGTCATCACGCCGGGCACGCCGTTCA
TGGACCGCCTGGCGGCGTACGTCCGGCACTTCATTAAGGACCGCATGTCC
CACCACGCCGGCTGGAAGCACTTCTCCGTCATTTTCTCCGACTCCAACGT
TCCCGGCGAAGGCGAGCACAAAATCATGAACTTTGTGCGCTTCCAGCGCT
CCCATCCGGACTTTAACCCCAACACCCGCCACATCCTGCACGGCTTGGAT
GCCGACCTCATCATGCTGGGGCTCGCCACACACGAGGCTCACTTCACGCT
GCTGCGTGAGGAGGTGCGGTTTGGGCGGCAGGCGGTCATGAAGTGCCACC
GGTGTGGCCAGGCGGGGCACAGCGTTGCGCAGTGCACGGGGGTGCGTGCT
GGCTCACTTCACGCTGCTGCGTGAGGAGGTGCGGTTTGGGCGGCAGGCGG
TCATGAAGTGCCACCGGTGTGGCCAGGCGGGGCACAGCGTTGCGCAGTGC
ACGGGGGTGCGTGCTGCACGGGTGAAGAAAGGCGACCACGGTGAGTTGGA
CGGCACGTCAGCCGCCAAGCCCAAGCCGCTGGAGTTGCTGAGCATTGCCA
CCCTGCGGGAGTACTTGGAGGGCGAGTTCCGGTCACTGGACGGCCGCCTG
CCGTTCACCTTTGACCTGGAGCGCATCATCGACGACTTTGTGTTCATGCA
CGGGTGAAGAAAGGCGACCACGGTGAGTTGGACGGCACGTCAGCCGCCAA
GCCCAAGCCGCTGGAGTTGCTGAGCATTGCCACCCTGCGGGAGTACTTGG
AGGGCGAGTTCCGGTCACTGGACGGCCGCCTGCCGTTCACCTTTGACCTG
GAGCGCATCATCGACGACTTTGTGTTCATGTGTTTTTTTGTTGGCAACGA
TTTCCTCCCCCACTTACCGTCCCTGGACATCCGTGAGGGCGCCATTGACC
TCCTGATTGCCCTGTACAAAGCCCTGCTGCCCACCTTGGGTGGCTACATC
ACTGTTTTTTTGTTGGCAACGATTTCCTCCCCCACTTACCGTCCCTGGAC
ATCCGTGAGGGCGCCATTGACCTCCTGATTGCCCTGTACAAAGCCCTGCT
GCCCACCTTGGGTGGCTACATCACCGACGCCGGCAACATTGACCGCAGCA
AGGTGGACGTGCTGCTGGGCAAGATAGGGGATATTGAGGACGAGATTTTC
CGGCGCCGAAAAGCCAGCGAGGAGCAGGCGGCCCGCAAGCGGGAGTCCAT
GGACCGTAGGGCCAAGGAGCAGCGGGCCAGAGAGCGGGCCAGGGCCGCCC
CTGTTGTGGCGCCAACGTTTTCGCACGCTGGCATGGTGGGGTCGGCGCCC
CCCGCGGACCCCAACGCCGGCGCGTCCGCCGCGGAGCTGAACAAGAAGCT
GGCTGACCGCCTGAAGGCGGAGCTGTTTGGAGACGACGACGAGTCACCGA
CGCGACGCCGGCAACATTGACCGCAGCAAGGTGGACGTGCTGCTGGGCAA
GATAGGGGATATTGAGGACGAGATTTTCCGGCGCCGAAAAGCCAGCGAGG
AGCAGGCGGCCCGCAAGCGGGAGTCCATGGACCGTAGGGCCAAGGAGCAG
CGGGCCAGAGAGCGGGCCAGGGCCGCCCCTGTTGTGGCGCCAACGTTTTC
GCACGCTGGCATGGTGGGGTCGGCGCCCCCCGCGGACCCCAACGCCGGCG
CGTCCGCCGCGGAGCTGAACAAGAAGCTGGCTGACCGCCTGAAGGCGGAG
CTGTTTGGAGACGACGACGAGTCACCGACGACCATGCTGGCCGCCGCCGA
GCACCTCAAGCTCATGGTGCGGACGACGTCGTACGACCGCAGCAAGCGGG
AGGACGTCGTGGACCACGTCCGGCTGGGGACGCCGGGGTGGAAGCAGCGG
TTCTACGAGGAAAAGTTTGGGAGGGAGGACGGCAACTCCCGGTCGTTCAA
GCAGGAGCTGTTCACGGAGTACGTCAAGGGCCTCATGTGGGTGTTCAAGT
ACTACTACGAGGGCGTGCCGTCGTGGAAGTGGTACTACCCGTACCACTAC
GCGCCCTTTGCGTCGGACTTGGTCAACGTTGACCGCTTCGACATTAGGTT
TGAGCTGGGGAAGCCGTTCCGCCCCCTGGAGCAGCTCATGGGCGTCCTGC
CGCCGCGCAGCGCCCACGCCCTCCCCCCCGCCTGCCAGCGCCTCATGTGC
GACGCTGAATCCCCGTACCGAGACTTTTACCCGGAGGACTTCAAGCTGGA
CCCCAACGGAAAGGCCATGACGTGGATGTGGATTGCGCTGCTGCCCTTCA
TTGACGAAACCCGCTTGCTGGAGGCTGTCAAGTCCGCGGAGACCATGCTG
GCCGCCGCCGAGCACCTCAAGCTCATGGTGCGGACGACGTCGTACGACCG
CAGCAAGCGGGAGGACGTCGTGGACCACGTCCGGCTGGGGACGCCGGGGT
GGAAGCAGCGGTTCTACGAGGAAAAGTTTGGGAGGGAGGACGGCAACTCC
CGGTCGTTCAAGCAGGAGCTGTTCACGGAGTACGTCAAGGGCCTCATGTG
GGTGTTCAAGTACTACTACGAGGGCGTGCCGTCGTGGAAGTGGTACTACC
CGTACCACTACGCGCCCTTTGCGTCGGACTTGGTCAACGTTGACCGCTTC
GACATTAGGTTTGAGCTGGGGAAGCCGTTCCGCCCCCTGGAGCAGCTCAT
GGGCGTCCTGCCGCCGCGCAGCGCCCACGCCCTCCCCCCCGCCTGCCAGC
GCCTCATGTGCGACGCTGAATCCCCGTACCGAGACTTTTACCCGGAGGAC
TTCAAGCTGGACCCCAACGGAAAGGCCATGACGTGGATGTGGATTGCGCT
GCTGCCCTTCATTGACGAAACCCGCTTGCTGGAGGCTGTCAAGTCCGCGG
AGCCGTCCTTCACTGCCGAAGAAAAGCGGCGCAACGCCCTGGGCAAGGAG
CTACTGTTCGTGGCGTCCGAGCCGTCCTTCACTGCCGAAGAAAAGCGGCG
CAACGCCCTGGGCAAGGAGCTACTGTTCGTGGCGTCCGAG
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