mRNA_S-firma_F_contig10541.753.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10541.753.1
Unique NamemRNA_S-firma_F_contig10541.753.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Match: W4GB07_9STRA (AMPKBI domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB07_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.090e-75
Identity = 121/218 (55.50%), Postives = 149/218 (68.35%), Query Frame = 1 
Query:   13 DATFGAGSASGHSPLPPSTTPVPVNPDDVVPTVFRWDHGGKKVFITGTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVADTAGNINNYIDLTHFRPDEEI-------VPSRNATVVGLPYVTNDVDEANFSKDPPGLPPHLRQITLNAPPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQRYKSKFVTTVYYSIMP 645
            DA+ G G++S  S L  + +     PD +VP VFRW+HGG+ V ITGTFNGWS+ V M  SG  FTYI  LPRGKHAYKF+VD+EWRFAPDQPTVAD  GNINNY+D++ F    ++         + + TV G      D+DE  ++K+PP LPPHLR I LN  P +    LLP PQ V +NHLYCT I+D +MV G+TQRYK KFVTTVYYS+MP
Sbjct:   90 DASSGHGASSSSSHLHDTASSATKQPD-IVPMVFRWEHGGRNVCITGTFNGWSAHVPMHRSGNDFTYIANLPRGKHAYKFVVDDEWRFAPDQPTVADVDGNINNYVDVSDFTSLADVDLDKADETDATDTTVYGR--FIPDLDE--YTKEPPPLPPHLRHIILNKAPPSVDCRLLPVPQHVALNHLYCTAIKDGMMVLGLTQRYKQKFVTTVYYSLMP 302
[Close]
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Match: A0A024U765_9STRA (AMPKBI domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U765_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.200e-75
Identity = 123/219 (56.16%), Postives = 147/219 (67.12%), Query Frame = 1 
Query:   16 ATFGAGSASGHSPLPPSTTPVPVNPDDVVPTVFRWDHGGKKVFITGTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVADTAGNINNYIDLTHF---------RPDEEIVPSRNATVVGLPYVTNDVDEANFSKDPPGLPPHLRQITLNAPPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQRYKSKFVTTVYYSIMP 645
            A  G  S+SG  P   S+   P    D+VP VFRW+HGG+ V ITGTFNGWS+ V M  SG  FTYI  LPRGKHAYKF+VD+EWRFAPDQPTVAD  GNINNY+D++ F         +PD +     + TV G      D+DE  ++K+PP LPPHLR I LN  P +    LLP PQ V +NHLYCT I+D +MV G+TQRYK KFVTTVYYS+MP
Sbjct:   88 ARTGGASSSGAVPSTASSVKQP----DIVPMVFRWEHGGRNVCITGTFNGWSAHVPMHRSGNDFTYIANLPRGKHAYKFVVDDEWRFAPDQPTVADVDGNINNYVDVSDFTSLADVELDKPDND----NDTTVYGR--FIPDLDE--YTKEPPPLPPHLRHIILNKAPPSVDCRLLPVPQHVALNHLYCTAIKDGMMVLGLTQRYKQKFVTTVYYSLMP 294
[Close]
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Match: A0A2D4CE07_PYTIN (5'-AMP-activated protein kinase subunit beta, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE07_PYTIN)

HSP 1 Score: 232 bits (592), Expect = 2.500e-74
Identity = 110/190 (57.89%), Postives = 135/190 (71.05%), Query Frame = 1 
Query:   91 DDVVPTVFRWDHGGKKVFITGTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVADTAGNINNYIDLTHFRP--DEEIVPSRNATVVGLPYVTNDVDEANFSKDPPGLPPHLRQITLNAPPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQRYKSKFVTTVYYSIMPHNS 654
            ++VVP VFRW+HGG+ V+ITGTFNGWS +  M  SG  FTYI  L RGKHAYKF+VDEEWRFAPDQ TVAD  GN+NN++D++ F P  D +    R+       +   D+DE  ++K+PP LPPHLR I LN  P +    LLP PQ V +NHLYCT I+D +MV G+TQRYK KFVTTVYYS+MP  S
Sbjct:    9 NEVVPMVFRWEHGGRNVYITGTFNGWSKQCPMHRSGNDFTYIANLTRGKHAYKFVVDEEWRFAPDQLTVADVEGNVNNFVDVSDFTPLSDFDFADDRDDEDGSYGHFIPDIDE--YTKEPPPLPPHLRHIILNKNPPSVDTRLLPVPQHVALNHLYCTAIKDGMMVLGVTQRYKQKFVTTVYYSLMPGTS 196
[Close]
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Match: A0A067BX06_SAPPC (AMPKBI domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BX06_SAPPC)

HSP 1 Score: 234 bits (598), Expect = 3.280e-74
Identity = 115/190 (60.53%), Postives = 137/190 (72.11%), Query Frame = 1 
Query:   91 DDVVPTVFRWDHGGKKVFITGTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVADTAGNINNYIDLTHFRP-----DEEIVPSRNATVVGLPYVTNDVDEANFSKDPPGLPPHLRQITLNAPPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQRYKSKFVTTVYYSIMP 645
            +D+VP VFRW+HGG+ V ITGTFNGW++ V M  SG  FTYI  LPRGKHAYKF+VD+EWRFAPDQPTVAD  GNINNY+D++ F        EE   + + TV G      D+DE  ++K+PP LPPHLR I LN  P +    LLP PQ V +NHLYCT I+D +MV GITQRYK KFVTTVYYS+MP
Sbjct:   81 NDIVPMVFRWEHGGRNVCITGTFNGWTTHVPMHRSGNDFTYIANLPRGKHAYKFVVDDEWRFAPDQPTVADVDGNINNYVDVSDFVALLDVDIEETNENDSETVYGR--FIPDIDE--YTKEPPPLPPHLRHIILNKAPPSVDCRLLPVPQHVALNHLYCTAIKDGMMVLGITQRYKQKFVTTVYYSLMP 266
[Close]
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Match: A0A8K1CTG3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTG3_PYTOL)

HSP 1 Score: 234 bits (597), Expect = 1.470e-73
Identity = 117/216 (54.17%), Postives = 147/216 (68.06%), Query Frame = 1 
Query:   22 FGAG------SASGHSPLPPSTTPVPVNPDDVVPTVFRWDHGGKKVFITGTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVADTAGNINNYIDLTHFRP--DEEIVPSRNATVVGLPYVTNDVDEANFSKDPPGLPPHLRQITLNAPPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQRYKSKFVTTVYYSIMP 645
            FG G      S+SG+ P   +T       +DVVP VFRW+HGG+ V+ITGTFNGWS +  M  SG  FTYI  L RGKHAYKF+VD+EWRFAPDQ TVAD  GN+NN++D++ F+P  D + V +++           D+DE  ++K+PP LPPHLR I LN  P +    LLP PQ V +NHLYCT I+D +MV G+TQRYK KFVTTVYYS+MP
Sbjct:   96 FGGGVTATPASSSGNPPTMAATK------NDVVPMVFRWEHGGRNVYITGTFNGWSKQCPMHRSGNDFTYIANLTRGKHAYKFVVDDEWRFAPDQLTVADVEGNVNNFVDVSEFQPLSDFDFVDNKDNDENSYGRFIPDIDE--YTKEPPPLPPHLRHIILNKNPPSVDNRLLPVPQHVALNHLYCTAIKDGMMVLGVTQRYKQKFVTTVYYSLMP 303
[Close]
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Match: A0A6G0XIX8_9STRA (AMPKBI domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIX8_9STRA)

HSP 1 Score: 232 bits (591), Expect = 4.270e-73
Identity = 113/197 (57.36%), Postives = 138/197 (70.05%), Query Frame = 1 
Query:   64 STTPVPVNPDDVVPTVFRWDHGGKKVFITGTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVADTAGNINNYIDLTHFRPDEEI---VPSRNATVVGLPYVTNDVDEANFSKDPPGLPPHLRQITLNAPPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQRYKSKFVTTVYYSIMP 645
            ++TP   + +D+VP VFRW+HGG+ V ITGTFNGWS+ V M  SG  FTYI  LPRGKHAYKF+VD+EWRFAPDQPTVAD  GNINNY+D++ F    ++    P  N           D+DE  ++K+PP LPPHLR I LN  P +    LLP PQ V +NHLY T I+D ++V GITQRYK KFVTTVYYS+MP
Sbjct:   76 TSTPDSSSKNDIVPMVFRWEHGGRNVCITGTFNGWSAHVPMHRSGNDFTYIANLPRGKHAYKFVVDDEWRFAPDQPTVADVDGNINNYVDVSDFASLADVDLDQPDDNDQETVYGRFIPDIDE--YTKEPPPLPPHLRHIMLNKAPPSVDCRLLPVPQHVALNHLYSTAIKDGMIVLGITQRYKQKFVTTVYYSLMP 270
[Close]
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Match: A0A2D4BXW6_PYTIN (5'-AMP-activated protein kinase subunit beta, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXW6_PYTIN)

HSP 1 Score: 230 bits (587), Expect = 8.210e-72
Identity = 109/190 (57.37%), Postives = 134/190 (70.53%), Query Frame = 1 
Query:   91 DDVVPTVFRWDHGGKKVFITGTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVADTAGNINNYIDLTHFRP--DEEIVPSRNATVVGLPYVTNDVDEANFSKDPPGLPPHLRQITLNAPPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQRYKSKFVTTVYYSIMPHNS 654
            ++VVP VFRW+HGG+ V+ITGTFNGWS +  M  SG  FTYI  L RGKHAYKF+VDE WRFAPDQ TVAD  GN+NN++D++ F P  D +    R+       +   D+DE  ++K+PP LPPHLR I LN  P +    LLP PQ V +NHLYCT I+D +MV G+TQRYK KFVTTVYYS+MP  S
Sbjct:  137 NEVVPMVFRWEHGGRNVYITGTFNGWSKQCPMHRSGNDFTYIANLTRGKHAYKFVVDEXWRFAPDQLTVADVEGNVNNFVDVSDFTPLSDFDFADDRDDEDSSYGHFIPDIDE--YTKEPPPLPPHLRHIILNKNPPSVDTRLLPVPQHVALNHLYCTAIKDGMMVLGVTQRYKQKFVTTVYYSLMPGTS 324
[Close]
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Match: A0A7S2LHN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHN5_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.200e-71
Identity = 110/189 (58.20%), Postives = 135/189 (71.43%), Query Frame = 1 
Query:   91 DDVVPTVFRWDHGGKKVFITGTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVADTAGNINNYIDLTHFRP---DEEIVPSRNATVVG----LPYVTNDVDEANFSKDPPGLPPHLRQITLNAPPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQRYKSKFVTTVYYS 636
            DD VPTVFRW+HGG++V++TGTFNGWS ++ M  SG  FTYI  L +GKHA+KFIVD+EWRFAPDQPTVAD  G INN+ID++ F+    D +     N+ VV       +   D+DE  ++K+PP LPPHLR I LN PP       LP PQ V +NHLYCT I+D +MV GITQRYK+KFVTTVYYS
Sbjct:  135 DDTVPTVFRWEHGGRQVYVTGTFNGWSKQIPMHRSGNDFTYIHNLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVSDFKAYTGDRDFEEKANSGVVEDVGEFSHSMPDLDE--YTKEPPPLPPHLRHIILNKPPQLADTAALPVPQHVALNHLYCTAIKDNMMVLGITQRYKTKFVTTVYYS 321
[Close]
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Match: A0A485L495_9STRA (Aste57867_15794 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L495_9STRA)

HSP 1 Score: 227 bits (578), Expect = 8.310e-71
Identity = 124/229 (54.15%), Postives = 146/229 (63.76%), Query Frame = 1 
Query:   34 SASGHSPLPPSTTPVPVNPDDVVPTVFRWDHGGK-------------------KVFITGTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVADTAGNINNYIDLTHFRPDEEI-----VPSRNATVVGLPYVTNDVDEANFSKDPPGLPPHLRQITLN-APPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQRYKSKFVTTVYYSIMP 645
            SASG +P P   T      +D+VP VFRW+HGG+                   +V ITGTFNGWS  V M  SG  FTYI  LPRGKHAYKF+VDEEWRFAPDQPTVAD  GNINNY+D++ F    ++       +   TV G      D+DE  ++K+PP LPPHLR I LN APP  D   LLP PQ V +NHLYCT I+D +MV G+TQRYK KFVTTVYYS+MP
Sbjct:   74 SASGAAPHPHEAT---ATKNDIVPMVFRWEHGGRNVRCRRRLCSCALLILVVQQVCITGTFNGWSVHVPMHRSGNDFTYIANLPRGKHAYKFVVDEEWRFAPDQPTVADVDGNINNYVDVSDFASLADVDLDQPEDTDQETVYGR--FIPDIDE--YTKEPPPLPPHLRHIILNKAPPTVD-CRLLPVPQHVALNHLYCTAIKDGMMVLGLTQRYKQKFVTTVYYSLMP 294
[Close]
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Match: A0A836CBZ2_9STRA (AMPKBI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ2_9STRA)

HSP 1 Score: 224 bits (572), Expect = 2.070e-70
Identity = 109/189 (57.67%), Postives = 135/189 (71.43%), Query Frame = 1 
Query:   91 DDVVPTVFRWDHGGKKVFITGTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVADTAGNINNYIDLTHFRP---DEEIVPSRNATVVGLPY--VTNDVDEANFSKDPPGLPPHLRQITLNAPPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQRYKSKFVTTVYYSIM 642
            D+VVPTVFRW+HGG++V+ITGTFN W  ++ M  SG  FTYI  L RGKHA+KFIVD+EWRFAPDQPTVAD  G +NN+ID++ F     D++   +RN       Y   T D+DE  ++K+PP LPPHLR I LN  P ++    LP PQ V +NHLYCT I+D +MV G+TQRYK KFVTTVYYS M
Sbjct:   72 DNVVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHDLKRGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSEFEAYTGDDDFEQARNKPEGDDLYSQFTPDLDE--YTKEPPPLPPHLRHIILNKNPPSNDPTALPPPQHVALNHLYCTAIKDGMMVLGMTQRYKQKFVTTVYYSCM 258
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10541.753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GB07_9STRA1.090e-7555.50AMPKBI domain-containing protein n=5 Tax=Aphanomyc... [more]
A0A024U765_9STRA1.200e-7556.16AMPKBI domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A2D4CE07_PYTIN2.500e-7457.895'-AMP-activated protein kinase subunit beta, puta... [more]
A0A067BX06_SAPPC3.280e-7460.53AMPKBI domain-containing protein n=4 Tax=Saprolegn... [more]
A0A8K1CTG3_PYTOL1.470e-7354.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XIX8_9STRA4.270e-7357.36AMPKBI domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A2D4BXW6_PYTIN8.210e-7257.375'-AMP-activated protein kinase subunit beta, puta... [more]
A0A7S2LHN5_9STRA1.200e-7158.20Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A485L495_9STRA8.310e-7154.15Aste57867_15794 protein n=1 Tax=Aphanomyces stella... [more]
A0A836CBZ2_9STRA2.070e-7057.67AMPKBI domain-containing protein n=1 Tax=Tribonema... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10541contigS-firma_F_contig10541:3477..4299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog157072.XP_008868724.1
Preferred namePRKAB2
PFAMsAMPK1_CBM,AMPKBI
Max annot lvl2759|Eukaryota
KEGG rclassRC00005
KEGG koko:K00703,ko:K07199
KEGG ReactionR02421
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map00500,map01100,map01110,map02026,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
KEGG ModuleM00565
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004679,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0005952,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0007049,GO:0007050,GO:0007154,GO:0007163,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010565,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016236,GO:0016301,GO:0016310,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023052,GO:0030011,GO:0031323,GO:0031326,GO:0031588,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0035088,GO:0035090,GO:0035878,GO:0036211,GO:0042304,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045786,GO:0046890,GO:0048518,GO:0048519,GO:0048523,GO:0048736,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051259,GO:0051291,GO:0051716,GO:0051726,GO:0060173,GO:0060249,GO:0060255,GO:0061245,GO:0061695,GO:0061919,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070050,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0098590,GO:0140096,GO:1901564,GO:1902494,GO:1902911,GO:1990234
Evalue1.97e-76
EggNOG OGsKOG1616@1|root,KOG1616@2759|Eukaryota
EC2.4.1.21
Descriptionamylopectin binding
COG categoryS
CAZyGT5
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons3
Model size678
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10541.753.1prot_S-firma_F_contig10541.753.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10541 3477..4299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.4426773-CDS-S-firma_F_contig10541:3476..37751622815590.4426773-CDS-S-firma_F_contig10541:3476..3775Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10541 3477..3775 -
1696949438.3739922-CDS-S-firma_F_contig10541:3476..37751696949438.3739922-CDS-S-firma_F_contig10541:3476..3775Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10541 3477..3775 -
1622815590.4529953-CDS-S-firma_F_contig10541:3837..39851622815590.4529953-CDS-S-firma_F_contig10541:3837..3985Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10541 3838..3985 -
1696949438.3849437-CDS-S-firma_F_contig10541:3837..39851696949438.3849437-CDS-S-firma_F_contig10541:3837..3985Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10541 3838..3985 -
1622815590.4644206-CDS-S-firma_F_contig10541:4068..42991622815590.4644206-CDS-S-firma_F_contig10541:4068..4299Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10541 4069..4299 -
1696949438.393346-CDS-S-firma_F_contig10541:4068..42991696949438.393346-CDS-S-firma_F_contig10541:4068..4299Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10541 4069..4299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10541.753.1

>prot_S-firma_F_contig10541.753.1 ID=prot_S-firma_F_contig10541.753.1|Name=mRNA_S-firma_F_contig10541.753.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=226bp
MLVPDATFGAGSASGHSPLPPSTTPVPVNPDDVVPTVFRWDHGGKKVFIT
GTFNGWSSKVQMVESGGSFTYIQALPRGKHAYKFIVDEEWRFAPDQPTVA
DTAGNINNYIDLTHFRPDEEIVPSRNATVVGLPYVTNDVDEANFSKDPPG
LPPHLRQITLNAPPFADSAHLLPTPQPVTMNHLYCTTIRDKLMVQGITQR
YKSKFVTTVYYSIMPHNSQEQSVSA*
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mRNA from alignment at S-firma_F_contig10541:3477..4299-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10541.753.1 ID=mRNA_S-firma_F_contig10541.753.1|Name=mRNA_S-firma_F_contig10541.753.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=823bp|location=Sequence derived from alignment at S-firma_F_contig10541:3477..4299- (Sphaerotrichia firma ET2_F female)
ATGCTCGTCCCCGACGCGACTTTTGGGGCGGGGTCCGCCTCCGGGCACTC
CCCCCTCCCGCCGTCCACGACGCCCGTCCCCGTGAACCCCGACGACGTCG
TCCCGACGGTATTTAGATGGGACCACGGCGGAAAAAAAGTCTTTATTACA
GGCACCTTCAACGGGTGGAGCTCCAAGGTGCAAATGGTGGAGAGCGGGGG
CTCCTTCACCTACATCCAGGCCCTGCCAAGGGTGCGTGCGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGGGAAGTGTAGTGTTTCCGCAGAATGCTGACCC
CCCCCCCCCTCCAGGGCAAACACGCGTACAAGTTCATTGTTGACGAGGAG
TGGAGATTTGCGCCAGACCAGCCGACAGTCGCGGACACCGCGGGTAACAT
CAACAACTACATCGACCTCACCCACTTTCGCCCCGACGAAGAAATTGTGC
CCTCACGCAACGGTGACTTTGCCCCCACCTCCTCACACATTCACCCACTC
ATTCACAAACTTCTGCCCCCACAGCCACCGTGGTGGGCCTCCCGTACGTC
ACCAACGACGTTGACGAAGCCAACTTCAGCAAGGACCCCCCAGGGCTGCC
GCCCCACCTCCGCCAAATCACCCTCAACGCGCCGCCGTTTGCGGACTCGG
CGCACCTGCTGCCCACCCCCCAGCCCGTCACCATGAACCACCTGTACTGC
ACCACCATCCGGGACAAACTCATGGTGCAGGGCATCACCCAGCGGTACAA
GTCAAAGTTTGTGACAACGGTGTACTACTCCATCATGCCCCACAACTCCC
AGGAGCAGTCCGTTTCAGCGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10541:3477..4299-

>mRNA_S-firma_F_contig10541.753.1 ID=mRNA_S-firma_F_contig10541.753.1|Name=mRNA_S-firma_F_contig10541.753.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1356bp|location=Sequence derived from alignment at S-firma_F_contig10541:3477..4299- (Sphaerotrichia firma ET2_F female)
ATGCTCGTCCCCGACGCGACTTTTGGGGCGGGGTCCGCCTCCGGGCACTC
CCCCCTCCCGCCGTCCACGACGCCCGTCCCCGTGAACCCCGACGACGTCG
TCCCGACGGTATTTAGATGGGACCACGGCGGAAAAAAAGTCTTTATTACA
GGCACCTTCAACGGGTGGAGCTCCAAGGTGCAAATGGTGGAGAGCGGGGG
CTCCTTCACCTACATCCAGGCCCTGCCAAGGATGCTCGTCCCCGACGCGA
CTTTTGGGGCGGGGTCCGCCTCCGGGCACTCCCCCCTCCCGCCGTCCACG
ACGCCCGTCCCCGTGAACCCCGACGACGTCGTCCCGACGGTATTTAGATG
GGACCACGGCGGAAAAAAAGTCTTTATTACAGGCACCTTCAACGGGTGGA
GCTCCAAGGTGCAAATGGTGGAGAGCGGGGGCTCCTTCACCTACATCCAG
GCCCTGCCAAGGGGCAAACACGCGTACAAGTTCATTGTTGACGAGGAGTG
GAGATTTGCGCCAGACCAGCCGACAGTCGCGGACACCGCGGGTAACATCA
ACAACTACATCGACCTCACCCACTTTCGCCCCGACGAAGAAATTGTGCCC
TCACGCAACGGGCAAACACGCGTACAAGTTCATTGTTGACGAGGAGTGGA
GATTTGCGCCAGACCAGCCGACAGTCGCGGACACCGCGGGTAACATCAAC
AACTACATCGACCTCACCCACTTTCGCCCCGACGAAGAAATTGTGCCCTC
ACGCAACGCCACCGTGGTGGGCCTCCCGTACGTCACCAACGACGTTGACG
AAGCCAACTTCAGCAAGGACCCCCCAGGGCTGCCGCCCCACCTCCGCCAA
ATCACCCTCAACGCGCCGCCGTTTGCGGACTCGGCGCACCTGCTGCCCAC
CCCCCAGCCCGTCACCATGAACCACCTGTACTGCACCACCATCCGGGACA
AACTCATGGTGCAGGGCATCACCCAGCGGTACAAGTCAAAGTTTGTGACA
ACGGTGTACTACTCCATCATGCCCCACAACTCCCAGGAGCAGTCCGTTTC
AGCGTAGCCACCGTGGTGGGCCTCCCGTACGTCACCAACGACGTTGACGA
AGCCAACTTCAGCAAGGACCCCCCAGGGCTGCCGCCCCACCTCCGCCAAA
TCACCCTCAACGCGCCGCCGTTTGCGGACTCGGCGCACCTGCTGCCCACC
CCCCAGCCCGTCACCATGAACCACCTGTACTGCACCACCATCCGGGACAA
ACTCATGGTGCAGGGCATCACCCAGCGGTACAAGTCAAAGTTTGTGACAA
CGGTGTACTACTCCATCATGCCCCACAACTCCCAGGAGCAGTCCGTTTCA
GCGTAG
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