mRNA_S-firma_F_contig1054.749.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1054.749.1
Unique NamemRNA_S-firma_F_contig1054.749.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Match: D7G4L3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L3_ECTSI)

HSP 1 Score: 441 bits (1135), Expect = 1.670e-146
Identity = 249/283 (87.99%), Postives = 258/283 (91.17%), Query Frame = 1 
Query:  886 GSRMDLLADLREEQRARRKGGGRSVSALMGARRQKKEKDALVIKGQGVDGVGAAA-EPATDSFGLKPEVKAPNISTMIESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMGGDEEDKXXXXXXXXXXXXXXAGNMLSEEDRLYTIPEDFKKKVEEAKLEFDTGANKGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTMAARDKLESVRAARRNAPGASSSLEGSLTANYSHHQKEWALQIRALQNRQAMAEESQTKAQPKSGPGMAASTQLAG 1731
            GSR+DLL DLREEQRARRKGGGRSVSALMG RRQ KEKDALVIKGQGVDG GAAA E A D+FGLKPEVKAPNISTM+ESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMGG+E          XXXXXXX    LSEEDRLYTIPEDFKKKVEEAK+EFDTGAN+GDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDT+AARDK+ESVRAARRNAPGASSSL GSLTANYSHHQKEWALQIRALQNRQAMAEESQTKA  KSGPGMAAS QL+G
Sbjct:  116 GSRLDLLTDLREEQRARRKGGGRSVSALMGGRRQAKEKDALVIKGQGVDGTGAAADEAANDAFGLKPEVKAPNISTMMESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMGGEE----GADAKEXXXXXXXXXXXLSEEDRLYTIPEDFKKKVEEAKVEFDTGANRGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTLAARDKMESVRAARRNAPGASSSLSGSLTANYSHHQKEWALQIRALQNRQAMAEESQTKAPTKSGPGMAASAQLSG 394
[Close]
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Match: A0A6H5KKI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI7_9PHAE)

HSP 1 Score: 437 bits (1124), Expect = 2.070e-146
Identity = 252/285 (88.42%), Postives = 263/285 (92.28%), Query Frame = 1 
Query:  886 GSRMDLLADLREEQRARRKGGGRSVSALMGARRQKKEKDALVIKGQGVDGVGAAA-EPATDSFGLKPEVKAPNISTMIESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMGGDEEDKXXXXXXXXXXXXXXAGNMLSEEDRLYTIPEDFKKKVEEAKLEFDTGANKGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTMAARDKLESVRAARRNAPGASSSLEGSLTANYSHHQKEWALQIRALQNRQAMAEESQTKAQPKSGPGMAASTQLAGGN 1737
            GSR+DLL DLREEQRARRKGGGRSVSALMG RRQ KEKDALVIKGQGVDG GAAA E A D+FGLK EVKAPNISTM+ESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMGG+E     XXXXXXXXXXXX    LSEEDRLYTIP+DFKKKVEEAK+EFDTGAN+G+EMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDT+AARDK+ESVRAARRNAPGASSSL GSLTANYSHHQKEWALQIRALQNRQAMAEESQTKA  KSGPGMAAS QL+G N
Sbjct:   37 GSRLDLLTDLREEQRARRKGGGRSVSALMGGRRQAKEKDALVIKGQGVDGTGAAAGEAANDAFGLKAEVKAPNISTMMESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMGGEE----GXXXXXXXXXXXXXXXXLSEEDRLYTIPDDFKKKVEEAKVEFDTGANRGNEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTLAARDKMESVRAARRNAPGASSSLSGSLTANYSHHQKEWALQIRALQNRQAMAEESQTKAPTKSGPGMAASAQLSGSN 317
[Close]
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Match: A0A7R9U2X2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2X2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.150e-16
Identity = 78/258 (30.23%), Postives = 126/258 (48.84%), Query Frame = 1 
Query:  904 LADLREEQRARRKGGGRSVSALMGARRQKKEKDALVIKGQGVDGVGAAAEPATDSFGLKPEVKAPNISTMIESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMGGDEEDKXXXXXXXXXXXXXXAGNMLSEEDRLYTIPEDFKKKVEEAKLEFDTGANKGDEMDGEV-GSGAQIAWNTGLAEIALPIEFKLKNMEDTMAARDKLESVRAARRNAPGASSSLEGSLTANYSHHQKEWALQIRALQNRQAMAEESQ 1674
            LA++R EQR RR+ GG     L                G  V   G  A+ A ++     E  AP   TM +    S        +++    + HE LM+ Y++ K+GG +                 A +  + ED+LYT+PE  + + ++ KL+ +    +G+ +D E  G+G  +AW +G+AE+ALPIE K +N+E T  A   L+ ++    + P A  S +G+++ NYS H++E+A +IR L  R A A   Q
Sbjct:   53 LAEIRAEQRGRRRAGGIPPEKL------------ATRAGGPVQAAGTEAKAAAEA---SSEPGAPKTLTMTQFMGTS--------SSNLTVEMQHENLMKAYIEKKLGGQKR---------------KASDAATPEDQLYTLPEHLRVQKQQ-KLDGEKD-KRGETIDAETDGAGGPLAWGSGIAEVALPIEEKRRNVEATERAIKALKELQEKGASDPLAVRSEDGNVSVNYSKHRREYAQEIRLLSERAAKARNDQ 270
[Close]
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Match: A0A836CP27_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP27_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.410e-15
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 1 
Query: 1339 FKKKVEEAKLEFDTGANKGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTMAARDKLESVRAARR--------------NAPGASSSLEGSLTANYSHHQKEWALQIR 1635
             K+ V EAK  F  G  K D++DGE+G GAQIAWNTG+AE+ LPI+ K++N+E T AAR     +   RR               A  A S L GS TANYSHH KE+A ++R
Sbjct:    1 MKRTVHEAKAMF--GTFKADDLDGEIGQGAQIAWNTGIAEVDLPIDVKMRNIEATKAARAAF--IARTRRXXXXXXXXXXXRGDEAAEAPSELIGSFTANYSHHSKEYAAKMR 109
[Close]
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Match: A0A7S2FKP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FKP9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.180e-13
Identity = 65/216 (30.09%), Postives = 109/216 (50.46%), Query Frame = 1 
Query:  892 RMDLLADLREEQRARRKGGGRSVSALM-----GARRQKKEKDALVIKGQGVDGVGAAAEPATDSFGLKPEVKAPNISTMIESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMGGDEEDKXXXXXXXXXXXXXXAGNMLSEEDRLYTIPEDFKKKVEEAKLEFDTGANKGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTMAARDKL 1524
            +++LLA+LR EQR RR+  G S S L+     G R+++K+++                    +  GL+ E   P++  ++ + F    TG  G   D  G   HEQ ME++++++M   E+                    ++EED+LY IP++FK K  +  +  D   NK +   GE    A +  NTG+AE++LP++F+L+N++ T  AR KL
Sbjct:   21 KLELLAELRNEQRDRRRAVGLSSSKLLAISEDGLRKREKKRE-------------------EEEKGLQDEAAGPDLKELMTNQF----TGQIGQGQD--GGKAHEQRMEEFIEEQMT--EKMGIKKEKDQSNESAEDGSQAMTEEDKLYLIPDEFKSKPRD--VGDDGTFNKREGFSGEA---APLFMNTGIAEVSLPLDFRLRNIQKTDEARAKL 204
[Close]
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Match: W7TWM8_9STRA (Hepatocellular carcinoma-associated antigen 59 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWM8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.840e-12
Identity = 53/155 (34.19%), Postives = 87/155 (56.13%), Query Frame = 1 
Query: 1186 HEQLMEQYVKDKMGGDEEDKXXXXXXXXXXXXXXAGNMLSEEDRLYTIPEDFKKKVEEAKLEFDTGANKGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTMAARDKLESVRAARRNAPGASSSLEGSLTANYSHHQKEWALQIRALQNR 1650
            HE++MEQY+++++G  +E+                 + +S  ++L  I E+       A+     G +K  + +G VG GA IA++TG+AE+ALP+EFKL+N+E T  AR  L+  +   R        + GSLT NY HH+KE+A+ +RA + +
Sbjct:   99 HERIMEQYIEERLGNVKEEAPEVVVPSEAVPP----SKVSRREQLLAITEEI-----HARARGPAG-DKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERAR-LLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREGK 242
[Close]
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Match: A0A835ZHL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHL7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.250e-10
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1 
Query:  901 LLADLREEQRARRKGGGRSVSALMGARRQKKEKDALVIKGQGVDGVGA--AAEPATDSFGLKPEVKAPNISTMIESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMG 1227
            +LADLREEQ ARR+  GR  ++++ + + K+E + LVI+G GVD  GA       T + G+  +    ++  MI+S FKSGG         + G +PHE+LME Y+++K+G
Sbjct:   55 VLADLREEQEARRRARGRGTASVIVSNKPKQEANPLVIRGAGVDNEGAPEGGGAPTGASGVGGQ----SLLQMIDSQFKSGGEA-------AGGGMPHEKLMESYIEEKLG 154
[Close]
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Match: A0A7S2WSH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSH1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.270e-10
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 1 
Query: 1186 HEQLMEQYVKDKMG----GDEEDKXXXXXXXXXXXXXXAGNMLSEEDRLYTIPEDFKKKVEEAKLEFDTGANKGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTMAARDKLESVRAARRNAPGASSSLEGSLTANYSHHQKEWALQIR 1635
            HE+ ME+++ +++G    GDE++K                    EED LY IPE                A  G  ++G  G  A +  NTG+AE+ LP+ F+LKN+EDT   R K++  R  RR     S    GS  +NY+HH++E A+ ++
Sbjct:  149 HEKRMEEFINERLGKKPAGDEDEKAAEA----------VPQSKREEDALYQIPE------------LAPEAVGGASVEGGTGHAAPLFMNTGIAEVNLPMRFRLKNIEDTDKLRAKMDGERPTRRPQESGSGLPTGSFNSNYNHHRREHAMMMK 280
[Close]
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Match: A0A482REQ4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482REQ4_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 2.810e-6
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1 
Query: 1381 GANKGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTMAARDKLESVRAARRNAPGASSSL------EGSLTANYSHHQKEWALQIR 1635
            GA+ G   DG+VG G  +   TG+AE+ALP E KL+N+E+T   R ++   RAAR         L       GS+TANY+ H++E+A+ ++
Sbjct:    5 GADSG--RDGDVGEGGMMLAGTGIAEVALPTEEKLRNIEETERLRQQMLERRAARAAEMADDGGLPHARYTSGSITANYTMHRREFAMNMK 93
[Close]
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Match: A0A7S2CXJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CXJ2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.510e-5
Identity = 40/126 (31.75%), Postives = 59/126 (46.83%), Query Frame = 1 
Query: 1147 GWGAAADSAGSVPHEQLMEQYVKDKMGGDEEDKXXXXXXXXXXXXXXAGNMLSEEDRLYTIPEDFKKKVEEAKLEFDTGANKGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTMAARDKL 1524
            G G   D A    HE+ ME+Y+ ++MG   E                 G  ++EE++LY +PE+ K        E D         +G  G  A +  NTG+AE+ LP++F+L N+E T A R  L
Sbjct:    4 GLGVQEDKA----HEKRMEEYIAEQMGDKVE-----------GGDDDGGREMTEEEKLYLVPEELKSSNNANISEQD--------REGYSGQAAPLFMNTGIAEVELPMQFRLANIERTDAMRQTL 106
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1054.749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G4L3_ECTSI1.670e-14687.99Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KKI7_9PHAE2.070e-14688.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9U2X2_9STRA3.150e-1630.23Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A836CP27_9STRA6.410e-1546.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FKP9_9STRA4.180e-1330.09Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TWM8_9STRA2.840e-1234.19Hepatocellular carcinoma-associated antigen 59 n=2... [more]
A0A835ZHL7_9STRA1.250e-1039.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WSH1_9STRA1.270e-1032.47Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A482REQ4_9ARCH2.810e-639.56Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2CXJ2_9STRA1.510e-531.75Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1054contigS-firma_F_contig1054:883..5970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G4L3
Preferred nameC9orf78
PFAMsHep_59
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00397
KEGG koko:K11703
KEGG ReactionR03380
KEGG Pathwayko00310,ko00514,map00310,map00514
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009637,GO:0009642,GO:0009644,GO:0009892,GO:0010099,GO:0010605,GO:0016604,GO:0016607,GO:0019222,GO:0022622,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0048364,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0055121,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0080022,GO:0080090,GO:0099402,GO:1903320,GO:1903321,GO:1904666,GO:1904667,GO:2000026,GO:2000030
Evalue5.93e-150
EggNOG OGsKOG3345@1|root,KOG3345@2759|Eukaryota
EC2.4.1.50
DescriptionHepatocellular carcinoma-associated antigen 59
COG categoryS
CAZyGT25
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHepatocellular carcinoma-associated antigen 59
Ec32 orthologEc-07_000170.1
Exons8
Model size1896
Cds size1356
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.9166362-CDS-S-firma_F_contig1054:882..11251622815589.9166362-CDS-S-firma_F_contig1054:882..1125Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 883..1125 -
1696949437.9568825-CDS-S-firma_F_contig1054:882..11251696949437.9568825-CDS-S-firma_F_contig1054:882..1125Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 883..1125 -
1622815589.9372945-CDS-S-firma_F_contig1054:1492..16581622815589.9372945-CDS-S-firma_F_contig1054:1492..1658Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 1493..1658 -
1696949438.001861-CDS-S-firma_F_contig1054:1492..16581696949438.001861-CDS-S-firma_F_contig1054:1492..1658Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 1493..1658 -
1622815589.953673-CDS-S-firma_F_contig1054:2059..21961622815589.953673-CDS-S-firma_F_contig1054:2059..2196Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 2060..2196 -
1696949438.012958-CDS-S-firma_F_contig1054:2059..21961696949438.012958-CDS-S-firma_F_contig1054:2059..2196Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 2060..2196 -
1622815589.9680524-CDS-S-firma_F_contig1054:2608..29341622815589.9680524-CDS-S-firma_F_contig1054:2608..2934Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 2609..2934 -
1696949438.0224617-CDS-S-firma_F_contig1054:2608..29341696949438.0224617-CDS-S-firma_F_contig1054:2608..2934Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 2609..2934 -
1622815589.9803758-CDS-S-firma_F_contig1054:3530..37201622815589.9803758-CDS-S-firma_F_contig1054:3530..3720Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 3531..3720 -
1696949438.032713-CDS-S-firma_F_contig1054:3530..37201696949438.032713-CDS-S-firma_F_contig1054:3530..3720Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 3531..3720 -
1622815589.9944792-CDS-S-firma_F_contig1054:4109..43031622815589.9944792-CDS-S-firma_F_contig1054:4109..4303Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 4110..4303 -
1696949438.0448358-CDS-S-firma_F_contig1054:4109..43031696949438.0448358-CDS-S-firma_F_contig1054:4109..4303Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 4110..4303 -
1622815590.0062058-CDS-S-firma_F_contig1054:5060..51601622815590.0062058-CDS-S-firma_F_contig1054:5060..5160Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 5061..5160 -
1696949438.056481-CDS-S-firma_F_contig1054:5060..51601696949438.056481-CDS-S-firma_F_contig1054:5060..5160Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 5061..5160 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.016112-UTR-S-firma_F_contig1054:5160..53251622815590.016112-UTR-S-firma_F_contig1054:5160..5325Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1054 5161..5325 -
1696949438.0654607-UTR-S-firma_F_contig1054:5160..53251696949438.0654607-UTR-S-firma_F_contig1054:5160..5325Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1054 5161..5325 -
1622815590.0271173-UTR-S-firma_F_contig1054:5595..59701622815590.0271173-UTR-S-firma_F_contig1054:5595..5970Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1054 5596..5970 -
1696949438.0736208-UTR-S-firma_F_contig1054:5595..59701696949438.0736208-UTR-S-firma_F_contig1054:5595..5970Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1054 5596..5970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1054.749.1prot_S-firma_F_contig1054.749.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1054 883..5160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1054.749.1

>prot_S-firma_F_contig1054.749.1 ID=prot_S-firma_F_contig1054.749.1|Name=mRNA_S-firma_F_contig1054.749.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=452bp
MADEDGGSSAVAPAPTFKKRAAGGKNFRRRGKGGGGEKSASGASAGSKET
GKDDSERTAKPDDAKSKSDGGEEGGDTAPEERRSDEGSDDNEVRTLLKKS
AGGRQGDADDGDEEDGSRMDLLADLREEQRARRKGGGRSVSALMGARRQK
KEKDALVIKGQGVDGVGAAAEPATDSFGLKPEVKAPNISTMIESAFKSGG
TGGWGAAADSAGSVPHEQLMEQYVKDKMGGDEEDKDGGGGGASGAGAGGA
GNMLSEEDRLYTIPEDFKKKVEEAKLEFDTGANKGDEMDGEVGSGAQIAW
NTGLAEIALPIEFKLKNMEDTMAARDKLESVRAARRNAPGASSSLEGSLT
ANYSHHQKEWALQIRALQNRQAMAEESQTKAQPKSGPGMAASTQLAGGNS
STDGGGRGGGGEGLEGATGMAEAGGAAMAEGGGTAGGGGGVEGGLGLGRG
G*
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mRNA from alignment at S-firma_F_contig1054:883..5970-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1054.749.1 ID=mRNA_S-firma_F_contig1054.749.1|Name=mRNA_S-firma_F_contig1054.749.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5088bp|location=Sequence derived from alignment at S-firma_F_contig1054:883..5970- (Sphaerotrichia firma ET2_F female)
GACAGGAAAAGAGAGCTTCCCGTTACAGCCAGGGCCAACGCAGCGGTGAC
TATTCGAAAGTAGAAGGGGAAAATCGCCTAAAGTCAATATCCATATCGGC
TGATCGGGATATTGGCTGTCGAGGGACTGTTGTCTTCGAGCACGACGACG
CGACAATGCTCTCCCCAGACCGACGACACCAAAGACGCTTAGCACCCAGC
ACCTTCGAGGACGTCTTCGCCAGTTCCTCAGCGAGCGCGGCCAGCTCCTC
TGGAGCCACTGACAGGTCCACCATGCCGTAGTACTGTTGCTGATGGCCTT
CGTCTTCCATGGACAGCAGGACACAAGTCTCGCGTGACGAGGAGGAGGAC
GACTGACGGCAACGAACAGGCAACAGTGCGTACCTACGGCGACGGCGCGG
CCCGGGGTAGGGTGCGTGTGTGCTTTTCTGGCGCTGTTTTGTCTCCCTTA
CCCTAGAACGGTGGGTGACCTACCGGCCGGCCCCGGCCCTGCAACTCGCC
AATCGTGTGTCGGCTTTATTTGAGCGCGCACAAGCGGAGCAGCGGAGCAC
ATATGAAAAGGGGGTCCACACAACAAGAATAACCGTGTATGCTGCTTTCG
ACGAAAAGCCCATCGTGCCCCCGTCTTTCCGCCGGCTTGCTCCAGCTCGC
AGACAACACACAGGAAGTAACACACGTTCCACAGGACGAAGCCCGCCAGT
CTCAGAGTTGTGGGGCTGGCATCGTCGTGTTTCAATTCGCAAGCATCGGA
GAGCATCAGAAGCTCCGCTTTTCCTTTTGCGGCGCCAAGCACACACGCCA
TCTGGCTAGCATGGCCGACGAGGACGGAGGATCGTCGGCTGTTGCGCCGG
CGCCGACATTCAAGAAGCGCGCAGCTGGCGGCAAGAACTTCCGGAGGCGT
GGCAAAGGAGGTGGGTGCATCGCTCTCCCCGCGAAGGTTTCGCGAATAGG
AAGCTCTTTGCGTGTTGTCCCTGGTGCTGCGTCGGCGAGGACAGAACGGG
CTACGACCGCAAGCTGCGGCAATGCCGCTTGCCCTGCCTGGAGGTAGTGT
TTCCGGCAGCCAAGATGACATGGGGGCTAGGCGATACCTACAGTTCTCCG
CCTTCTCTGCCTTACACTTCCAACGTTGATTGGGCTGCTGTAGAAAATCG
GGGTGCCAACAGCAGTCCACAGCAACCAGTTGGCCACAGCAGGACCCTCT
GTTCGGGAGGGCAGCGTGGGATCGTGCATGGCTATTGTAGTGTAGTACGC
GCGCACCTCTACAAGTAGGCGGAAGCAGTCTAGAGATCGAGAGGAGGCGT
GACCGAGTCGTGGCCGTGTCGTCGGGGTGACATTTTTTTGCATCGTAGCG
AGGCCGCTCGCGCGGAGTTGTGAGGAGTCGAGAGTTGGCGGTGTGCCGAC
CGCGGTACAAATGCTTGTAGATCTTGGAGCCCGTTTTGACTCGAAAGCAA
GATCATGACAAACTTCTTCCGAGGCACTCTGGGCATAGGTGCCAATCTTG
CTGGTGCGCTTCAAAAAGGAGAGCAAAGTACGTAGCCTCGAACGTTTCAA
AGTTGCTGCATGTGTTTATACCGGTGTGTGTACTTTCAAGTCAATGTTTC
GTTCTTTCAAGTCGGCAAATACTCACTGTCCGTTGCTTTCGTGAACGAAC
GCCCTGGAACACAAAAGGAGGAGGGGAGAAATCAGCGAGTGGCGCCTCCG
CAGGAAGCAAGGAAACGGGAAAAGACGACTCCGAGCGCACCGCGAAACCA
GATGACGCAAAGAGCAAGAGTGACGGGGGCGAGGAGGGCGGGGACACGGC
ACCGGAGGAGAGGAGAAGCGACGAGGGCAGCGACGACAACGAGGTCAGAA
CTCTCCTGAAAGTAGTCTGCCTTGCCTCGAAGTCTACGATGGTACCCCGT
TGTTGCTGTGCCCCGGTTAGGTTGACACAGCAGTCGCCTTGTTTTGGTTG
GAAGACGGTTGTCGACAGTCGAACGCAGATGCCCCTTTCTTCCGCGGTGA
TGTGTCATGGTTGGGCGTGCCGTGCCGTGCCAGCCAATTTTCATGATACG
GCTTGTGAAGGTGGCTTGTCCACAGGGAATGGGGAGATACAAGCTACGAC
GGCTTCACACATCCTATAATAGCGGGCCTCGACAATCAACCACCATGTAT
TTCACAAGCGGTTGCTTGCGCCAACCAACACATTACCAACACAACCTCCG
GCCCCCGCCCCCGCCCCCGCCCCCCCGCCGATGTTTCGTTCCGTCAACAG
AAGAGCGCGGGGGGGAGACAAGGGGACGCGGACGACGGGGACGAAGAAGA
CGGCAGCCGCATGGACCTCTTGGCGGACCTGAGGGAGGAGCAGCGGGCCA
GGAGGAAGGGCGGGGGGCGGTCGGTGTCGGCGCTGATGGGAGCGCGTCGC
CAGAAGAAGGAGAAGGATGCCTTGGTGATCAAGGGCCAAGGTGGGTTGGT
CCGTCCGTCCGCCCGCCCACGAGGCGCGTTTTGGATGCGTGCTCGTGTGC
TGCTATCTCCGCTGTAGATTTTCGGTGTTTGTTTGTTCCCGCCTTGGTGG
CGACAATCCTCCTCGCTTGTTGTTGTTATGGGTGGTGGTGGTGGTGGTGG
TGGTGTCAGAAGTACGAACTCGCAGTTCAGATGCTGCACTACGAAACACT
CGCGAGACAAGACCGCGGCGTTCGCATGCGGCACCATGAACACTCGCAAG
AGAAGGCCACGGCTCGCGTGTTACGGCCCAACAGTGTGCGCCAACGGAAG
GTGAAGATACAGCAGTGTCGCCGCGCGGAAACAGGGCGTAGACTCCGCAG
GAAGCATGAAACATGCACCACTACTCTTACCCGCCGTGCGTGGTCTGGTC
CGATGTACGCGCGGTAGCGTGGACGAAGGCACAGCGACCCTGCTTCGCCC
CCCAACCTCCACCCCCCCAAAAAAGTCCCAAGAATACGTTTCAATCTCAA
AACCAACGACAAACGACAGCATCAACGGAGACCGAAACAACACACCTTAA
GCTCCACATCCCCCCCCCCCCGCGCAACAAGAACAGGCGTGGACGGGGTC
GGGGCCGCCGCCGAGCCAGCCACAGACTCCTTCGGCCTCAAGCCCGAGGT
CAAGGCGCCCAACATCTCCACCATGATCGAATCCGCCTTTAAGTCCGGAG
GGACGGGCGGCTGGGGAGCCGCCGCCGACTCGGCGGGATCGGTGCCGCAC
GAGCAGCTGATGGAGCAGTACGTCAAGGACAAGATGGGCGGGGACGAGGA
GGACAAGGACGGGGGCGGGGGCGGCGCGTCCGGGGCGGGGGCGGGAGGTG
CGGGAAACATGCTAAGCGAGGAGGATCGGCTGTACACGATCCCCGAGGAT
TTCAAGAAGAAGGTAGGGGGGGGGGTCGATTTGGTGTAGAGGTTGCTGTT
GGAGTGAGGCACATGGGGTGGAAGATCTTTCCGCGCACGGATGGTTGATA
ACATGCATGCCGGCGGTGTCGAATCATGGGCCACGGTTTTCACGGCGAAT
GGTGCCCGATTCCAAGTAGATGCCCACTACTGGTGCGTCTTTCTCCCTTT
TGTATGTCTGTATTTTGACTGCTACTGTAGAAGTTACCGTAGCGGTCTAC
ACCTACAACCCGTGATGAATGTTTTCACGGGGGAACTGTTGTGGACATAA
ACCCTCCCGCACCAACCCCAGCTACATAGGATGTCACATGACTACTGTGC
GATGGTATTTTTGCACGTATGTCATTAGAGCGAACCAACCGCCTTCCTTG
CTTGGTGCGGTCTTTCTCTGTCAGGTTGAGGAAGCGAAGCTCGAGTTCGA
CACGGGGGCGAACAAGGGCGACGAGATGGACGGCGAGGTCGGCAGCGGGG
CACAGATCGCGTGGAACACGGGGCTGGCAGAGATCGCCCTGCCCATCGAG
TTCAAGCTCAAGTGAGGGATACATTAGAGCAGAAATGCTTGATCCAGTGG
GGGGTGTTCCGCCATGGTGGCGTTCATGTCGTTGTAAGTCGATCCAGCTT
AAGTGAGATGAGTCGGTCGTGCCTATTATGCCTATTTTGGTGTAGTCGGT
GAGGATGGACGGTTTAATTTTGGCACCGAAATATTTGGGATGTTCCAGCT
TTACAAATATTTTTTTGTTTCATGTCGGCCCTTTGCAGCTTGTCCCTCGG
CATTTTCTCGTTTCTCCTCGTGGCCTGTCCACAGGCTTAGCATCCACTGA
TACCTCTGCCCCATGGCTAGGCTGTCGTTGATGTTTTCCATGGTGAGCCC
ATGCGCGATTACCGACCCCCCCCCCCCCGGCGCCCAACGCTGCTTGTTTT
CTGCGACGACAGGAATATGGAAGACACAATGGCGGCGAGGGACAAGCTGG
AGTCGGTCAGGGCGGCCCGCCGCAACGCTCCAGGGGCGTCATCGTCGCTG
GAAGGATCGCTGACCGCCAACTACTCGCACCACCAGAAGGAGTGGGCGTT
GCAGATCAGGGCGTTGCAAAACAGACAGGTATTCTGTGGTTCTTGCCTGC
TTCGTTTTTTCGCTGTTGCGGTAGGGTGTGAGCTGAGCCAGGTTGTTCTT
GTGAGGATGCTTGTCTTCTTTGATTGGAGTTGGAGCACGCAGACGTTGCA
AGCAGGGCGCGCGACGGAAAGGATCACGTCAGAGATGCTTTTCGCATGGT
CTTGTGGAAGGCTGCTGTGATGGCGCGATGGCTACTGTCGCCATGACACG
CGAGTTTTTGTCGGCGCCCGCTGGAATTTAGTTGTGCTGTGCTTGCTTCA
CCCTTCACTGGTGCGTCACACTCCTTCGCCCTTGGGGATCAACACACGCG
CCGACGGTTAAGCCTTGCCCACGTCCATCCCCCGCGGTGTTACAGGCGAT
GGCGGAAGAGAGCCAGACGAAGGCTCAGCCGAAAAGCGGACCGGGCATGG
CGGCTTCCACCCAACTCGCCGGCGGTAACAGCTCTACAGACGGAGGTGGA
AGGGGGGGGGGGGGCGAGGGTCTGGAAGGGGCGACGGGTATGGCCGAGGC
GGGGGGGGCGGCTATGGCCGAGGGGGGGGGGACGGCGGGGGGAGGGGGAG
GGGTGGAGGGGGGCCTAGGACTGGGCCGGGGGGGATAA
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Coding sequence (CDS) from alignment at S-firma_F_contig1054:883..5970-

>mRNA_S-firma_F_contig1054.749.1 ID=mRNA_S-firma_F_contig1054.749.1|Name=mRNA_S-firma_F_contig1054.749.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2712bp|location=Sequence derived from alignment at S-firma_F_contig1054:883..5970- (Sphaerotrichia firma ET2_F female)
ATGGCCGACGAGGACGGAGGATCGTCGGCTGTTGCGCCGGCGCCGACATT
CAAGAAGCGCGCAGCTGGCGGCAAGAACTTCCGGAGGCGTGGCAAAGGAG
ATGGCCGACGAGGACGGAGGATCGTCGGCTGTTGCGCCGGCGCCGACATT
CAAGAAGCGCGCAGCTGGCGGCAAGAACTTCCGGAGGCGTGGCAAAGGAG
GAGGAGGGGAGAAATCAGCGAGTGGCGCCTCCGCAGGAAGCAAGGAAACG
GGAAAAGACGACTCCGAGCGCACCGCGAAACCAGATGACGCAAAGAGCAA
GAGTGACGGGGGCGAGGAGGGCGGGGACACGGCACCGGAGGAGAGGAGAA
GCGACGAGGGCAGCGACGACAACGAGGTCAGAACTCTCCTGAAAGAGGAG
GGGAGAAATCAGCGAGTGGCGCCTCCGCAGGAAGCAAGGAAACGGGAAAA
GACGACTCCGAGCGCACCGCGAAACCAGATGACGCAAAGAGCAAGAGTGA
CGGGGGCGAGGAGGGCGGGGACACGGCACCGGAGGAGAGGAGAAGCGACG
AGGGCAGCGACGACAACGAGGTCAGAACTCTCCTGAAAAAGAGCGCGGGG
GGGAGACAAGGGGACGCGGACGACGGGGACGAAGAAGACGGCAGCCGCAT
GGACCTCTTGGCGGACCTGAGGGAGGAGCAGCGGGCCAGGAGGAAGGGCG
GGGGGCGGTCGGTGTCGGCGCTGATGGGAGCGCGTCGCCAGAAGAAGGAG
AAGGATGCCTTGGTGATCAAGGGCCAAGAAGAGCGCGGGGGGGAGACAAG
GGGACGCGGACGACGGGGACGAAGAAGACGGCAGCCGCATGGACCTCTTG
GCGGACCTGAGGGAGGAGCAGCGGGCCAGGAGGAAGGGCGGGGGGCGGTC
GGTGTCGGCGCTGATGGGAGCGCGTCGCCAGAAGAAGGAGAAGGATGCCT
TGGTGATCAAGGGCCAAGGCGTGGACGGGGTCGGGGCCGCCGCCGAGCCA
GCCACAGACTCCTTCGGCCTCAAGCCCGAGGTCAAGGCGCCCAACATCTC
CACCATGATCGAATCCGCCTTTAAGTCCGGAGGGACGGGCGGCTGGGGAG
CCGCCGCCGACTCGGCGGGATCGGTGCCGCACGAGCAGCTGATGGAGCAG
TACGTCAAGGACAAGATGGGCGGGGACGAGGAGGACAAGGACGGGGGCGG
GGGCGGCGCGTCCGGGGCGGGGGCGGGAGGTGCGGGAAACATGCTAAGCG
AGGAGGATCGGCTGTACACGATCCCCGAGGATTTCAAGAAGAAGGCGTGG
ACGGGGTCGGGGCCGCCGCCGAGCCAGCCACAGACTCCTTCGGCCTCAAG
CCCGAGGTCAAGGCGCCCAACATCTCCACCATGATCGAATCCGCCTTTAA
GTCCGGAGGGACGGGCGGCTGGGGAGCCGCCGCCGACTCGGCGGGATCGG
TGCCGCACGAGCAGCTGATGGAGCAGTACGTCAAGGACAAGATGGGCGGG
GACGAGGAGGACAAGGACGGGGGCGGGGGCGGCGCGTCCGGGGCGGGGGC
GGGAGGTGCGGGAAACATGCTAAGCGAGGAGGATCGGCTGTACACGATCC
CCGAGGATTTCAAGAAGAAGGTTGAGGAAGCGAAGCTCGAGTTCGACACG
GGGGCGAACAAGGGCGACGAGATGGACGGCGAGGTCGGCAGCGGGGCACA
GATCGCGTGGAACACGGGGCTGGCAGAGATCGCCCTGCCCATCGAGTTCA
AGCTCAAGTTGAGGAAGCGAAGCTCGAGTTCGACACGGGGGCGAACAAGG
GCGACGAGATGGACGGCGAGGTCGGCAGCGGGGCACAGATCGCGTGGAAC
ACGGGGCTGGCAGAGATCGCCCTGCCCATCGAGTTCAAGCTCAAGAATAT
GGAAGACACAATGGCGGCGAGGGACAAGCTGGAGTCGGTCAGGGCGGCCC
GCCGCAACGCTCCAGGGGCGTCATCGTCGCTGGAAGGATCGCTGACCGCC
AACTACTCGCACCACCAGAAGGAGTGGGCGTTGCAGATCAGGGCGTTGCA
AAACAGACAGGAATATGGAAGACACAATGGCGGCGAGGGACAAGCTGGAG
TCGGTCAGGGCGGCCCGCCGCAACGCTCCAGGGGCGTCATCGTCGCTGGA
AGGATCGCTGACCGCCAACTACTCGCACCACCAGAAGGAGTGGGCGTTGC
AGATCAGGGCGTTGCAAAACAGACAGGCGATGGCGGAAGAGAGCCAGACG
AAGGCTCAGCCGAAAAGCGGACCGGGCATGGCGGCTTCCACCCAACTCGC
CGGCGGTAACAGCTCTACAGACGGAGGTGGAAGGGGGGGGGGGGGCGAGG
GTCTGGAAGGGGCGACGGGTATGGCCGAGGCGGGGGGGGCGGCTATGGCC
GAGGGGGGGGGGACGGCGGGGGGAGGGGGAGGGGTGGAGGGGGGCCTAGG
ACTGGGCCGGGGGGGATAAGCGATGGCGGAAGAGAGCCAGACGAAGGCTC
AGCCGAAAAGCGGACCGGGCATGGCGGCTTCCACCCAACTCGCCGGCGGT
AACAGCTCTACAGACGGAGGTGGAAGGGGGGGGGGGGGCGAGGGTCTGGA
AGGGGCGACGGGTATGGCCGAGGCGGGGGGGGCGGCTATGGCCGAGGGGG
GGGGGACGGCGGGGGGAGGGGGAGGGGTGGAGGGGGGCCTAGGACTGGGC
CGGGGGGGATAA
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