mRNA_S-firma_F_contig10520.732.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10520.732.1
Unique NamemRNA_S-firma_F_contig10520.732.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Match: A0A6V2EN90_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EN90_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.790e-26
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    4 IVLEATTGPYAGQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEVSTTHGKFEMKDGKVLFTDCESTNGSQLNGKPLEAREATPLNTGDILEVGGGNFHVTVTV 327
            I +E  TGPY G T+ LKP+  + P  IGRS+GK F  +G+SLPDD EVST+HGKFE+K  K  F D  STNGS   GK LE  E   L  G +++VG     +T+ +
Sbjct:  124 IRVEIITGPYNGNTYDLKPKI-RGPCFIGRSSGKKFRERGISLPDDPEVSTSHGKFEVKKKKFYFVDTGSTNGSICEGKDLEPNEPLELKDGMVIKVGVSMLRITLAM 230          
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Match: A0A5A8CYM7_CAFRO (FHA domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYM7_CAFRO)

HSP 1 Score: 100 bits (250), Expect = 6.200e-24
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1
Query:    1 DIVLEATTGPYAGQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEVSTTHGKFEMKDGKVLFTDCESTNGSQLNGKPLEAREATPLNTGDILEVGGGNFHVTV 321
            ++  +  +GP+AG   +L+PRQ +   K GRSTG+ F   G+SLP+D EVSTTH K E + G V  TD +STNGS L+G  +   E  PL    IL VG  + H+T+
Sbjct:  135 NVRAKVMSGPHAGIDTVLRPRQRRLVPKFGRSTGQQFVKNGISLPEDDEVSTTHAKLEARGGAVWVTDLDSTNGSILDGASMPPGEPLPLPHQCILRVGQSDIHLTM 241          
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Match: A0A7S1FRI1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRI1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.220e-23
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 DIVLEATTGPYA-GQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEVSTTHGKFEMKDGKVLF-TDCESTNGSQLNGKPLEAREATPLNTGDILEVGGGNFHVT 318
            D+ +    GPY  G+T++LKPR  +AP  +GRST K F  +G+SLP D E+STTHGKFE+K+  VL+ TD  STNGS    + +E   +  L  G +L++G GN H+T
Sbjct:  102 DLEITIRGGPYDDGKTYLLKPRF-RAPCFLGRSTSKKFREKGMSLPRDFEMSTTHGKFEVKNNGVLYYTDLGSTNGSFHENRQVEPEVSLELKDGMVLQIGAGNLHIT 208          
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Match: A0A7S2UEV6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEV6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.270e-23
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 DIVLEATTGPYAGQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEVSTTHGKFEMKDGKVLFTDCESTNGSQLNGKPLEAREATPLNTGDILEVGGGNFHVTV 321
             + ++   GPYAG +++LKPR  +    +GRS GK F  +G+SLP D EVSTTHGKFEMK GK+ F D  STNG+  NG+ ++      L  G IL++G     +++
Sbjct:  174 SVKVDLMDGPYAGNSFVLKPRARQI-CYVGRSAGKKFRDKGMSLPKDPEVSTTHGKFEMKAGKIFFVDMGSTNGTLCNGQEIQPDVPLELTEGMILQIGAAKCMISL 279          
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Match: A0A7S2EPN0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EPN0_TRICV)

HSP 1 Score: 99.4 bits (246), Expect = 1.740e-23
Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    4 IVLEATTGPYAGQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEVSTTHGKFEMKDGKVLFTDCESTNGSQLNGKPLEAREATPLNTGDILEVGGGNFHVTVTV 327
            I ++   GPY G ++ LKPR  + P  +GRS GK F  +G+SLP D EVSTTHGKFE+K GK  F D  STNG+    K LE     PL   D LE+  G  HV +T+
Sbjct:  123 IYVKVLGGPYEGSSYELKPRA-RTPCFVGRSAGKKFRDRGISLPKDGEVSTTHGKFEIKAGKAYFVDTGSTNGTVYQDKELEPN--APLELEDDLELIIGTTHVKITL 227          
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Match: B7FXA3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXA3_PHATC)

HSP 1 Score: 96.3 bits (238), Expect = 2.000e-22
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   10 LEATTGPYAGQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEVSTTHGKFEMKDGKVLFTDCESTNGSQLNGKPLEAREATPLNTGDILEVGGGNFHVTVT 324
            +E   G Y GQ++ LKP   KAP  +GRS GK FT++G+SL  D EVSTTHGKFE+ + +V FTD  STNG+++ G+ LE     P+  G  LE+  G   + V+
Sbjct:  112 VEIVAGEYVGQSYELKPSS-KAPCMVGRSKGKKFTTRGISLAKDLEVSTTHGKFEIVNDQVCFTDTGSTNGTRIGGQELETDTPVPITDG--LEITCGQTILKVS 213          
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Match: A0A6U4CF63_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CF63_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.620e-21
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 DIVLEATTGPYAGQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEVSTTHGKFEMKDGKVLFTDCESTNGSQLNGKPLEAREATPLNTGDILEVGGGNFHVTVTVVA 333
            D+VL    GP+ G+ + L+P  G     +GRSTGK +  +GVSL +D E ST H K  +  GK++FTD  STNGS +NG+P+E  E  P+   + +E+G G   + V +VA
Sbjct:  124 DVVLAVQAGPHEGEEFRLQPSAGVC--YVGRSTGKRYREKGVSLSNDPEASTLHAKIRVLQGKIVFTDAGSTNGSTVNGEPVE--EGDPITLENGMELGIGGCLLRVALVA 230          
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Match: A0A7R9WG63_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WG63_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.650e-20
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 DIVLEATTGPYAGQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEVSTTHGKFEMKDGKVLFTDCESTNGSQLNGKPLEAREATPLNTGDILEVGGGNFHVTVTV 327
             I ++   G Y G+ ++LKPR  +AP  +GRS GK F  +G+SL  D+EVSTTHGKFE+K GK  F D  STNG+    + LE     PL   D +E+  G   VT+T+
Sbjct:  206 QIYVDVIGGSYKGKKYVLKPRP-RAPCFVGRSAGKKFRDRGMSLAKDSEVSTTHGKFEIKAGKAFFVDTGSTNGTLYLEEELEVN--APLELKDGMELLIGTTLVTITL 311          
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Match: A0A7S4A7S8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7S8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.970e-20
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    4 IVLEATTGPYAGQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEVSTTHGKFEMKDGKVLFTDCESTNGSQLNGKPLEAREATPLNTGDILEVGGGNFHVT 318
            + + ATTGP+ G  +  K   G A   +GRS GK F  +G+SLP D EVSTTH K E+K+ +++  D  STNG+ ++G+P+E  +  PL  G+ +  G   F V+
Sbjct:   93 VTMVATTGPHKGIAF--KMTVGAAACFVGRSGGKKFREKGISLPKDNEVSTTHAKIELKNDEIVLVDVGSTNGTSIDGEPIEEGKPHPLAAGNTVVFGASTFTVS 195          
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Match: A0A7S4JX86_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JX86_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.120e-18
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   25 GPYAGQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEVSTTHGKFEMKDGKVLFTDCESTNGSQLNGKPLEAREATPLNTGDILEVGGGNFHVTVTV 327
            GPY G+T+ LKPR  ++P  +GRS GK F  +G+SL  D+EVSTTHGKFE+K GK  F D  STNG+    + LE    +PL   + +E+  G   V +++
Sbjct:  137 GPYEGKTFNLKPRP-RSPCYVGRSAGKKFRERGMSLQKDSEVSTTHGKFEVKSGKAFFVDTGSTNGTLHMEQELEVN--SPLELHNDMEILIGATLVKISL 234          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10520.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V2EN90_9STRA7.790e-2649.07Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A5A8CYM7_CAFRO6.200e-2444.86FHA domain-containing protein n=2 Tax=Cafeteria ro... [more]
A0A7S1FRI1_9STRA1.220e-2347.22Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2UEV6_9STRA1.270e-2343.93Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2EPN0_TRICV1.740e-2348.15Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
B7FXA3_PHATC2.000e-2246.67Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6U4CF63_9STRA1.620e-2142.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9WG63_9STRA6.650e-2044.95Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4A7S8_9STRA6.970e-2040.95Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4JX86_9STRA1.120e-1845.54Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10520contigS-firma_F_contig10520:814..1149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2850.Phatr45323
PFAMsFHA
Max annot lvl2836|Bacillariophyta
Evalue3.28e-23
EggNOG OGs2E05Y@1|root,2S7MG@2759|Eukaryota,2XDX1@2836|Bacillariophyta
DescriptionFHA domain
COG categoryS
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.4061832-CDS-S-firma_F_contig10520:813..11491622815588.4061832-CDS-S-firma_F_contig10520:813..1149Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10520 814..1149 +
1696949436.956735-CDS-S-firma_F_contig10520:813..11491696949436.956735-CDS-S-firma_F_contig10520:813..1149Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10520 814..1149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10520.732.1prot_S-firma_F_contig10520.732.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10520 814..1149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10520.732.1

>prot_S-firma_F_contig10520.732.1 ID=prot_S-firma_F_contig10520.732.1|Name=mRNA_S-firma_F_contig10520.732.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=112bp
DIVLEATTGPYAGQTWILKPRQGKAPKKIGRSTGKHFTSQGVSLPDDAEV
STTHGKFEMKDGKVLFTDCESTNGSQLNGKPLEAREATPLNTGDILEVGG
GNFHVTVTVVA*
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mRNA from alignment at S-firma_F_contig10520:814..1149+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10520.732.1 ID=mRNA_S-firma_F_contig10520.732.1|Name=mRNA_S-firma_F_contig10520.732.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10520:814..1149+ (Sphaerotrichia firma ET2_F female)
GACATTGTGCTGGAGGCCACGACTGGGCCCTACGCCGGACAGACGTGGAT CCTTAAGCCCCGGCAGGGCAAGGCGCCCAAGAAAATTGGGCGCTCCACCG GGAAGCACTTTACGTCCCAGGGTGTCAGCCTGCCGGACGACGCCGAGGTG TCCACCACCCACGGTAAGTTTGAGATGAAGGACGGAAAGGTGTTGTTCAC GGACTGCGAGAGCACCAATGGCTCCCAGCTCAACGGCAAACCCCTGGAGG CCCGGGAAGCCACACCACTCAACACCGGCGACATCCTGGAGGTGGGCGGC GGCAACTTCCACGTCACTGTGACCGTGGTGGCATAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10520:814..1149+

>mRNA_S-firma_F_contig10520.732.1 ID=mRNA_S-firma_F_contig10520.732.1|Name=mRNA_S-firma_F_contig10520.732.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=672bp|location=Sequence derived from alignment at S-firma_F_contig10520:814..1149+ (Sphaerotrichia firma ET2_F female)
GACATTGTGCTGGAGGCCACGACTGGGCCCTACGCCGGACAGACGTGGAT
CCTTAAGCCCCGGCAGGGCAAGGCGCCCAAGAAAATTGGGCGCTCCACCG
GGAAGCACTTTACGTCCCAGGGTGTCAGCCTGCCGGACGACGCCGAGGTG
TCCACCACCCACGGTAAGTTTGAGATGAAGGACGGAAAGGTGTTGTTCAC
GGACTGCGAGAGCACCAATGGCTCCCAGCTCAACGGCAAACCCCTGGAGG
CCCGGGAAGCCACACCACTCAACACCGGCGACATCCTGGAGGTGGGCGGC
GGCAACTTCCACGTCACTGTGACCGTGGTGGCATAAGACATTGTGCTGGA
GGCCACGACTGGGCCCTACGCCGGACAGACGTGGATCCTTAAGCCCCGGC
AGGGCAAGGCGCCCAAGAAAATTGGGCGCTCCACCGGGAAGCACTTTACG
TCCCAGGGTGTCAGCCTGCCGGACGACGCCGAGGTGTCCACCACCCACGG
TAAGTTTGAGATGAAGGACGGAAAGGTGTTGTTCACGGACTGCGAGAGCA
CCAATGGCTCCCAGCTCAACGGCAAACCCCTGGAGGCCCGGGAAGCCACA
CCACTCAACACCGGCGACATCCTGGAGGTGGGCGGCGGCAACTTCCACGT
CACTGTGACCGTGGTGGCATAA
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