mRNA_S-firma_F_contig10511.717.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10511.717.1
Unique NamemRNA_S-firma_F_contig10511.717.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Match: A0A6G0X5P0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5P0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.030e-32
Identity = 55/91 (60.44%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMCRSYRFGQTRPTFVYRLVGRKTIEERIYNTQVAKEKLARRIV 273
            I QFN P+   +V+L+STRAGGEG+NL GGNR++IFDVCWNP HD Q+MCRSYRFGQ +P +VYRL+   T+E+++Y+ QV KE +++R+V
Sbjct:  629 IAQFNDPSEDVDVILISTRAGGEGVNLCGGNRVVIFDVCWNPCHDSQSMCRSYRFGQAKPVYVYRLISAGTMEKKVYDLQVKKEGVSKRVV 719
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BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Match: A0A3R7AWM5_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AWM5_9STRA)

HSP 1 Score: 126 bits (317), Expect = 5.330e-32
Identity = 54/91 (59.34%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMCRSYRFGQTRPTFVYRLVGRKTIEERIYNTQVAKEKLARRIV 273
            I QFN P    +V+L+STRAGGEG+NL GGNR++IFDVCWNP HD Q+MCRSYRFGQ +P +VYR++   T+E+++Y+ QV KE +++R+V
Sbjct:  265 IAQFNDPDEEVDVILISTRAGGEGVNLCGGNRVVIFDVCWNPCHDAQSMCRSYRFGQAKPVYVYRIISAGTMEKKVYDLQVKKEGVSKRVV 355
[Close]
BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Match: W4FLZ2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLZ2_9STRA)

HSP 1 Score: 126 bits (317), Expect = 6.670e-32
Identity = 54/91 (59.34%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMCRSYRFGQTRPTFVYRLVGRKTIEERIYNTQVAKEKLARRIV 273
            I QFN P    +V+L+STRAGGEG+NL GGNR++IFDVCWNP HD Q+MCRSYRFGQ +P +VYR++   T+E+++Y+ QV KE +++R+V
Sbjct:  649 IAQFNDPDEEVDVILISTRAGGEGVNLCGGNRVVIFDVCWNPCHDAQSMCRSYRFGQAKPVYVYRIISAGTMEKKVYDLQVKKEGVSKRVV 739
[Close]
BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Match: A0A1V9ZE76_9STRA (Transcriptional regulator ATRX n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZE76_9STRA)

HSP 1 Score: 126 bits (316), Expect = 9.100e-32
Identity = 54/91 (59.34%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMCRSYRFGQTRPTFVYRLVGRKTIEERIYNTQVAKEKLARRIV 273
            I QFN P    +V+L+ST+AGGEG+NL GGNR++IFDVCWNP HD Q+MCRSYRFGQ +P +VYRL+   T+E+++Y+ QV KE +++R+V
Sbjct:  639 ISQFNDPCEEVDVILISTKAGGEGVNLCGGNRVVIFDVCWNPCHDAQSMCRSYRFGQMKPVYVYRLIAAGTMEKKVYDLQVRKEGVSKRVV 729
[Close]
BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Match: A0A024GT32_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GT32_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.250e-31
Identity = 56/91 (61.54%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMCRSYRFGQTRPTFVYRLVGRKTIEERIYNTQVAKEKLARRIV 273
            I+QFN P    +V+ +ST+AGGEGINL GGNRI+IFDVCWNP +D Q+MCRSYRFGQT+P FVYR V   T+E+++Y+ Q+ KE +A++IV
Sbjct:  774 IEQFNDPEEDVDVIFISTKAGGEGINLCGGNRIVIFDVCWNPCNDAQSMCRSYRFGQTKPVFVYRFVAGATMEKKVYDLQIRKEGVAKQIV 864
[Close]
BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Match: F0WI30_9STRA (Transcriptional regulator ATRX putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WI30_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.250e-31
Identity = 56/91 (61.54%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMCRSYRFGQTRPTFVYRLVGRKTIEERIYNTQVAKEKLARRIV 273
            I+QFN P    +V+ +ST+AGGEGINL GGNRI+IFDVCWNP +D Q+MCRSYRFGQT+P FVYR V   T+E+++Y+ Q+ KE +A++IV
Sbjct:  773 IEQFNDPEEDVDVIFISTKAGGEGINLCGGNRIVIFDVCWNPCNDAQSMCRSYRFGQTKPVFVYRFVAGATMEKKVYDLQIRKEGVAKQIV 863
[Close]
BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Match: A0A1V9ZPK9_9STRA (Transcriptional regulator ATRX n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPK9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.690e-31
Identity = 54/91 (59.34%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMCRSYRFGQTRPTFVYRLVGRKTIEERIYNTQVAKEKLARRIV 273
            I  FN P+   +V+L+ST+AGGEG+NL GGNR+IIFDVCWNP HD Q+MCRSYRFGQ +P +VYRL+   T+E+++Y+ QV KE +++R+V
Sbjct:  635 ISMFNDPSEEVDVILISTKAGGEGVNLCGGNRVIIFDVCWNPCHDAQSMCRSYRFGQKKPVYVYRLIAAGTMEKKVYDLQVRKEGVSKRVV 725
[Close]
BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Match: A0A067CIB8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CIB8_SAPPC)

HSP 1 Score: 124 bits (311), Expect = 4.300e-31
Identity = 53/91 (58.24%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    1 IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMCRSYRFGQTRPTFVYRLVGRKTIEERIYNTQVAKEKLARRIV 273
            I  FN P    +V+L+ST+AGGEG+NL GGNR++IFDVCWNP HD Q+MCRSYRFGQ +P +VYRL+   T+E+++Y+ QV KE +++R+V
Sbjct:  642 ISMFNDPCEEVDVILISTKAGGEGVNLCGGNRVVIFDVCWNPCHDAQSMCRSYRFGQLKPVYVYRLIAAGTMEKKVYDLQVRKEGVSKRVV 732
[Close]
BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Match: A0A024UKP1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKP1_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.870e-31
Identity = 54/91 (59.34%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    1 IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMCRSYRFGQTRPTFVYRLVGRKTIEERIYNTQVAKEKLARRIV 273
            I QFN      +V+L+STRAGGEG+NL GGNR++IFDVCWNP HD Q+MCRSYRFGQ +P +VYRL+   T+E+++Y+ QV KE +++R+V
Sbjct:  638 IAQFNDRDEEVDVILISTRAGGEGVNLCGGNRVVIFDVCWNPCHDAQSMCRSYRFGQVKPVYVYRLISAGTMEKKVYDLQVKKEGVSKRVV 728
[Close]
BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Match: A0A397CGS2_9STRA (Helicase C-terminal domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CGS2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.680e-30
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMCRSYRFGQTRPTFVYRLVGRKTIEERIY 231
            I QFN P    +V+L+STRAGGEG+NL GGNR++IFDVCWNP HD Q+MCRSYRFGQ +P +VYR++   T+E++++
Sbjct:   66 IAQFNDPDEEVDVILISTRAGGEGVNLCGGNRVVIFDVCWNPCHDAQSMCRSYRFGQAKPVYVYRIISAGTMEKKVW 142
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10511.717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0X5P0_9STRA1.030e-3260.44Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A3R7AWM5_9STRA5.330e-3259.34Helicase C-terminal domain-containing protein n=1 ... [more]
W4FLZ2_9STRA6.670e-3259.34Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A1V9ZE76_9STRA9.100e-3259.34Transcriptional regulator ATRX n=1 Tax=Achlya hypo... [more]
A0A024GT32_9STRA1.250e-3161.54Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WI30_9STRA1.250e-3161.54Transcriptional regulator ATRX putative n=1 Tax=Al... [more]
A0A1V9ZPK9_9STRA1.690e-3159.34Transcriptional regulator ATRX n=1 Tax=Thraustothe... [more]
A0A067CIB8_SAPPC4.300e-3158.24Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024UKP1_9STRA5.870e-3159.34Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A397CGS2_9STRA1.680e-3061.04Helicase C-terminal domain-containing protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10511contigS-firma_F_contig10511:2239..2511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog653948.CCA20908
PFAMsHelicase_C,SNF2_N,Tudor-knot
Max annot lvl2759|Eukaryota
KEGG koko:K06767,ko:K10779,ko:K10876
Evalue2.05e-32
EggNOG OGsCOG0553@1|root,KOG1016@2759|Eukaryota
EC3.6.4.12
DescriptionATP binding
COG categoryL
BRITEko00000,ko01000,ko03000,ko03036,ko03400,ko04516
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.0644066-CDS-S-firma_F_contig10511:2238..25111622815587.0644066-CDS-S-firma_F_contig10511:2238..2511Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10511 2239..2511 -
1696949436.1627145-CDS-S-firma_F_contig10511:2238..25111696949436.1627145-CDS-S-firma_F_contig10511:2238..2511Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10511 2239..2511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10511.717.1prot_S-firma_F_contig10511.717.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10511 2239..2511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10511.717.1

>prot_S-firma_F_contig10511.717.1 ID=prot_S-firma_F_contig10511.717.1|Name=mRNA_S-firma_F_contig10511.717.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=91bp
IQQFNSPTSGANVMLVSTRAGGEGINLVGGNRIIIFDVCWNPSHDHQAMC
RSYRFGQTRPTFVYRLVGRKTIEERIYNTQVAKEKLARRIV
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mRNA from alignment at S-firma_F_contig10511:2239..2511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10511.717.1 ID=mRNA_S-firma_F_contig10511.717.1|Name=mRNA_S-firma_F_contig10511.717.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=273bp|location=Sequence derived from alignment at S-firma_F_contig10511:2239..2511- (Sphaerotrichia firma ET2_F female)
ATCCAGCAGTTCAACTCCCCCACTAGCGGCGCCAACGTCATGCTGGTGTC
CACGCGGGCGGGCGGGGAGGGCATCAACCTCGTCGGCGGCAACCGCATCA
TCATCTTTGACGTGTGCTGGAACCCCAGCCACGACCACCAGGCCATGTGC
CGGTCGTACCGGTTTGGGCAGACGCGGCCGACGTTTGTGTACCGCCTGGT
GGGGCGCAAGACGATTGAGGAACGCATCTACAACACGCAGGTGGCAAAGG
AGAAGCTGGCGCGGCGGATTGTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10511:2239..2511-

>mRNA_S-firma_F_contig10511.717.1 ID=mRNA_S-firma_F_contig10511.717.1|Name=mRNA_S-firma_F_contig10511.717.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=546bp|location=Sequence derived from alignment at S-firma_F_contig10511:2239..2511- (Sphaerotrichia firma ET2_F female)
ATCCAGCAGTTCAACTCCCCCACTAGCGGCGCCAACGTCATGCTGGTGTC
CACGCGGGCGGGCGGGGAGGGCATCAACCTCGTCGGCGGCAACCGCATCA
TCATCTTTGACGTGTGCTGGAACCCCAGCCACGACCACCAGGCCATGTGC
CGGTCGTACCGGTTTGGGCAGACGCGGCCGACGTTTGTGTACCGCCTGGT
GGGGCGCAAGACGATTGAGGAACGCATCTACAACACGCAGGTGGCAAAGG
AGAAGCTGGCGCGGCGGATTGTGATCCAGCAGTTCAACTCCCCCACTAGC
GGCGCCAACGTCATGCTGGTGTCCACGCGGGCGGGCGGGGAGGGCATCAA
CCTCGTCGGCGGCAACCGCATCATCATCTTTGACGTGTGCTGGAACCCCA
GCCACGACCACCAGGCCATGTGCCGGTCGTACCGGTTTGGGCAGACGCGG
CCGACGTTTGTGTACCGCCTGGTGGGGCGCAAGACGATTGAGGAACGCAT
CTACAACACGCAGGTGGCAAAGGAGAAGCTGGCGCGGCGGATTGTG
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