mRNA_S-firma_F_contig10507.713.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10507.713.1
Unique NamemRNA_S-firma_F_contig10507.713.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10507.713.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 1.260e-67
Identity = 131/180 (72.78%), Postives = 135/180 (75.00%), Query Frame = 1 
Query:    1 ISEAGARADSEARRAASTEPP----ATGEGGGATPTAPGREPRPPILQARFCGARVVYLQRFTMEQYCHILQRLIPSLKSAVRRPEDSLSGSPVAALAQKKGLRWVQGCTPKLPERRRMEKACARRPIIMEWVCKDSEFHLPECSDYREGRTDALVFEIPRLCLFRPPLRRCLPNTQETP 528
            ISEA  RA+ EAR  +S  P     A  EG       PGREPRPPIL+ARF  ARVVYLQRFTMEQ      R      S  RRPEDSL GSPVAALAQK GLRWVQGCTPKLPERRRMEKACARRPI+MEWVCKDSEFHLPECSDYREGRTDALVFEIPRLCLFRPPLRR LP     P
Sbjct: 1399 ISEAEVRAEREARGLSSAGPGVEDVAPREG------TPGREPRPPILRARFSAARVVYLQRFTMEQ-----AREEDDGGSVCRRPEDSLCGSPVAALAQKAGLRWVQGCTPKLPERRRMEKACARRPIVMEWVCKDSEFHLPECSDYREGRTDALVFEIPRLCLFRPPLRRRLPPAAGNP 1567
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BLAST of mRNA_S-firma_F_contig10507.713.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 9.030e-11
Identity = 53/100 (53.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 ISEAGARADSEARRAASTEPPATGEGGGATPTAPGREPRPPILQARFCGARVVYLQRFTMEQYCHIL-------QRLIPSLKSAVRRPEDSLSG-SPVAA 276
            ISEA ARAD EAR  +S  P    EG  A    PGREPRPPIL+ARF  ARVVYLQRFTMEQ   +        +RL P+  +     ED+ SG SP AA
Sbjct:  490 ISEAEARADREARGISSAGPVV--EGVAAREGTPGREPRPPILRARFSAARVVYLQRFTMEQIPRLCLFRPPLRRRLQPAAGNPTTPSEDTRSGDSPSAA 587
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10507.713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K463_9PHAE1.260e-6772.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LME4_ECTSI9.030e-1153.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10507contigS-firma_F_contig10507:1464..4068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size641
Cds size639
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10507.713.1prot_S-firma_F_contig10507.713.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10507 1465..4068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.6925755-CDS-S-firma_F_contig10507:1464..16411622815586.6925755-CDS-S-firma_F_contig10507:1464..1641Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10507 1465..1641 -
1696949435.9125144-CDS-S-firma_F_contig10507:1464..16411696949435.9125144-CDS-S-firma_F_contig10507:1464..1641Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10507 1465..1641 -
1622815586.7052226-CDS-S-firma_F_contig10507:2355..24521622815586.7052226-CDS-S-firma_F_contig10507:2355..2452Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10507 2356..2452 -
1696949435.9307141-CDS-S-firma_F_contig10507:2355..24521696949435.9307141-CDS-S-firma_F_contig10507:2355..2452Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10507 2356..2452 -
1622815586.7199636-CDS-S-firma_F_contig10507:3233..34121622815586.7199636-CDS-S-firma_F_contig10507:3233..3412Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10507 3234..3412 -
1696949435.9451513-CDS-S-firma_F_contig10507:3233..34121696949435.9451513-CDS-S-firma_F_contig10507:3233..3412Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10507 3234..3412 -
1622815586.7306445-CDS-S-firma_F_contig10507:3882..40681622815586.7306445-CDS-S-firma_F_contig10507:3882..4068Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10507 3883..4068 -
1696949435.9597433-CDS-S-firma_F_contig10507:3882..40681696949435.9597433-CDS-S-firma_F_contig10507:3882..4068Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10507 3883..4068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10507.713.1

>prot_S-firma_F_contig10507.713.1 ID=prot_S-firma_F_contig10507.713.1|Name=mRNA_S-firma_F_contig10507.713.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=213bp
ISEAGARADSEARRAASTEPPATGEGGGATPTAPGREPRPPILQARFCGA
RVVYLQRFTMEQYCHILQRLIPSLKSAVRRPEDSLSGSPVAALAQKKGLR
WVQGCTPKLPERRRMEKACARRPIIMEWVCKDSEFHLPECSDYREGRTDA
LVFEIPRLCLFRPPLRRCLPNTQETPPAAAAAASTNGGDGGQPPHTPATA
AGGGAPARTTKSR
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mRNA from alignment at S-firma_F_contig10507:1464..4068-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10507.713.1 ID=mRNA_S-firma_F_contig10507.713.1|Name=mRNA_S-firma_F_contig10507.713.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2605bp|location=Sequence derived from alignment at S-firma_F_contig10507:1464..4068- (Sphaerotrichia firma ET2_F female)
ATAAGCGAAGCGGGGGCACGAGCGGACAGCGAGGCCAGGCGCGCCGCATC
CACGGAACCCCCCGCCACGGGGGAGGGGGGGGGGGCGACGCCGACGGCAC
CCGGAAGGGAACCCCGACCCCCCATACTGCAGGCCCGGTTCTGCGGGGCG
CGGGTGGTGTACCTGCAGAGGTTCACCATGGAGCAGGCGAGTCCGTCTCT
CACGATACACGACCGTTTCGGCTTTTTCGTTCTTGTCCGTGTGCTTTTTT
GTTGCGGGTTTCAAAAAAGACGTCAGCAGTCTATTGTTTGTGTACCTCCA
ACCTGTACGCGGGAAAGAGAGGGACACGCCGGGTGGGGGGGGTTGCTGCT
GCCGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCGTAGAGACGCTATCGATACCTC
TCCGTCGCCACCCCCCCCCCGCTACTATGTACCATGTACACATACAATCA
GTCAAAGCTCGCGATCTTTTTGTGATCCAAACCCCCCCCCCCCCCCCCGC
CCTTTTTTTCTTGTCATCCCAACAATCCCGCATTTCTCCCCCCCCCCCCT
CCCCCCTCCCCCACGCAACGCAACGCCGACGGATCGGACGGGACGGCGAC
ACACAGTACTGCCACATCCTGCAGCGGCTGATCCCGTCCCTCAAGTCGGC
GGTCCGCCGGCCGGAGGACTCGCTGAGCGGTAGCCCCGTGGCCGCGCTGG
CGCAGAAGAAGGGGCTCCGCTGGGTGCAGGGGTGTACCCCCAAGCTGCCC
GAGCGTCGGCGGATGGAGAAGGCTTGCGCGCGAAGGTGGGTGGTATTCTA
TTCTATTGTATCGTGTGAGTGTTTTTGTTGAAGTGGAACGAAGAAAGAGG
GAGAAAACGTTTGGTGCTGTTTGCTGGGACGGGGAGGGTTAGTGTGTACA
CAACAGTCGGCCTAGAACGATATATTCACTTGTAGAAAATTTATTGAAAG
AAGAGCTGTGCAGGAGGGGGAGGGGGTGAAAGAAGAAGAAAACGAAACAA
GGAAGAACAACTAGAATTAGCTGTGTGCAGGGGAGGTGGGTGGGGTGTTG
AACACTTTGGATATGTGTGCTGTGTGCATATGTAACGGATGAAGTTTTAC
CAAAGAACAAAAAGAACAAAAAACGAAGAGCTGTTTTGTCCATCCATCGC
CTGCCTTCGTTCAACCCTTGCTCGAGAGAAGATTGGCGGGCTTCTTTCTC
TTTCTCCCCGACGTGTCTTTGCTGCTTTTCGACCGCATCACGCGCGTGGA
GGTTGTCATTTTGCGTTATACTGTAGCTCAGCTCGGAGTTTTCGTCCTGT
GTACGGGAAGGTTCCTTCTTTGATTTCGTGACTTTTTTTTGTTTTGTTTT
TTTTTTTCAGCAAGAAAAACAAGAAACACGAAACACAGAAGTCGCAACGG
AGCCCCGAGTTTCCGAAATCTATCTACGCAAGATACCGACCCCTTTTGAG
CCCAATCTTGATAAATTGATCGATTGATCCCATCCCCCCTTGGAAATGGA
AATTAAGCGTCAACATCATACGGACCCCCCCCCCCCCTCCCCGTCGCCGC
CTCGCCCGTTTGGCAGGCCGATCATCATGGAGTGGGTCTGCAAGGACAGC
GAGTTTCACCTGCCGGAGTGCTCTGACTACCGCGAGGGGCGGACGGACGC
GCTGGTCTTTGAGGTGGGGGTTCCGCACGATGCGTGGTTTTCCCACGGGG
GGGTGGGGGGTTCCGAACGCGCCTTTTGTTTGTTGGCCCTGCTGGCAGCC
GTACGTATTTCGCCCTCATTTTGTTTTGTTAAACAACGTCAAAATACAAG
CGAAGCCACGCCCCCCTAAGAATCCATCAACTCTTGAAAATCAACGCACA
CTCTCGCGCCGCTGCTCCTTCACCACCCGCGCCCCACCAACGCACCAACC
CACTTCTTCCTTGCCTCCCTCCCTCCCTCTCCCTCTCTCCCTGCCGCCCT
CTCTGTGTGGGTCTCTGTCTCTGTCTCCCTCTCTCTCCTCTGTTGTCTCT
CCTTCTCTCTCCCCCCTTCTCTTTGCCTTTCTCGTCTCTCTCTCTGTGTC
TCTCTGCTCCTCCCCCCCCCCCCCCTCTCTCTCTTCTGTCTGTCTGTCTC
TTCTCTCTTGTCGCTCCTTCTCTTTGCCTTTCTCTTCTCTCTGTCTGTCT
CTCTCTGCTCCTCTCTCTCCCCCCCCCCTCTCTCTTCTCTCTGTCTGTCT
GTCTCTCTCTGCTCATCTCTCCCCCTCCCCCTCTCTCTTCTCTCTGTCTG
TCTCTCTCTGATCCTCTCTCTCCCTCCCCCCTCTCTCTTCTCTCTGTCTG
TCTGTCTGTCTGTCTCTCCCTCCACCTTTCCTCCTGTCGCGCTCTCCTTG
CCGTACGCCGTCGGCACCACCTCCCAGATCCCGCGGCTGTGCCTCTTCCG
ACCCCCGCTCCGGCGATGCCTCCCAAACACCCAAGAAACCCCACCCGCCG
CTGCCGCCGCTGCTTCCACCAATGGCGGCGACGGCGGCCAACCACCGCAT
ACCCCAGCCACAGCAGCAGGCGGCGGGGCCCCCGCACGCACGACGAAGAG
CAGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10507:1464..4068-

>mRNA_S-firma_F_contig10507.713.1 ID=mRNA_S-firma_F_contig10507.713.1|Name=mRNA_S-firma_F_contig10507.713.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1278bp|location=Sequence derived from alignment at S-firma_F_contig10507:1464..4068- (Sphaerotrichia firma ET2_F female)
ATAAGCGAAGCGGGGGCACGAGCGGACAGCGAGGCCAGGCGCGCCGCATC
CACGGAACCCCCCGCCACGGGGGAGGGGGGGGGGGCGACGCCGACGGCAC
CCGGAAGGGAACCCCGACCCCCCATACTGCAGGCCCGGTTCTGCGGGGCG
CGGGTGGTGTACCTGCAGAGGTTCACCATGGAGCAGATAAGCGAAGCGGG
GGCACGAGCGGACAGCGAGGCCAGGCGCGCCGCATCCACGGAACCCCCCG
CCACGGGGGAGGGGGGGGGGGCGACGCCGACGGCACCCGGAAGGGAACCC
CGACCCCCCATACTGCAGGCCCGGTTCTGCGGGGCGCGGGTGGTGTACCT
GCAGAGGTTCACCATGGAGCAGTACTGCCACATCCTGCAGCGGCTGATCC
CGTCCCTCAAGTCGGCGGTCCGCCGGCCGGAGGACTCGCTGAGCGGTAGC
CCCGTGGCCGCGCTGGCGCAGAAGAAGGGGCTCCGCTGGGTGCAGGGGTG
TACCCCCAAGCTGCCCGAGCGTCGGCGGATGGAGAAGGCTTGCGCGCGAA
GTACTGCCACATCCTGCAGCGGCTGATCCCGTCCCTCAAGTCGGCGGTCC
GCCGGCCGGAGGACTCGCTGAGCGGTAGCCCCGTGGCCGCGCTGGCGCAG
AAGAAGGGGCTCCGCTGGGTGCAGGGGTGTACCCCCAAGCTGCCCGAGCG
TCGGCGGATGGAGAAGGCTTGCGCGCGAAGGCCGATCATCATGGAGTGGG
TCTGCAAGGACAGCGAGTTTCACCTGCCGGAGTGCTCTGACTACCGCGAG
GGGCGGACGGACGCGCTGGTCTTTGAGGCCGATCATCATGGAGTGGGTCT
GCAAGGACAGCGAGTTTCACCTGCCGGAGTGCTCTGACTACCGCGAGGGG
CGGACGGACGCGCTGGTCTTTGAGATCCCGCGGCTGTGCCTCTTCCGACC
CCCGCTCCGGCGATGCCTCCCAAACACCCAAGAAACCCCACCCGCCGCTG
CCGCCGCTGCTTCCACCAATGGCGGCGACGGCGGCCAACCACCGCATACC
CCAGCCACAGCAGCAGGCGGCGGGGCCCCCGCACGCACGACGAAGAGCAG
GATCCCGCGGCTGTGCCTCTTCCGACCCCCGCTCCGGCGATGCCTCCCAA
ACACCCAAGAAACCCCACCCGCCGCTGCCGCCGCTGCTTCCACCAATGGC
GGCGACGGCGGCCAACCACCGCATACCCCAGCCACAGCAGCAGGCGGCGG
GGCCCCCGCACGCACGACGAAGAGCAGG
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