mRNA_S-firma_F_contig1050.704.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1050.704.1 vs. uniprot
Match: D8LF13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF13_ECTSI) HSP 1 Score: 607 bits (1565), Expect = 1.560e-208 Identity = 353/565 (62.48%), Postives = 411/565 (72.74%), Query Frame = 1
Query: 55 MADEGDASVCDNPGGSVGPAALLALRTLVNELLSIELPSLKECAVTFQAAFESSWHSLTAWAAVVTLVLSPVLQFLAALARAVWPHAQGAATALFQYQASLPLSTVLTEAAAVVFVVAAFLLRRFIVRQRYLPRAQRRVRRFRARLGRGYASFSKAAERNFRLSARAFPHVAYWTAAGSFAWIAPGPAAWLRENFSVFVTAAWPTLYGLYLTLLLRSQ----DPDAPNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAPTPVRTPMARTSTSXXGXXTPARSPGAAALGRGARVMPQDVDRVLMYWVVFTVVKVVSLLPLASTAVEFFGRPFVRSIAFFLALWMHLPGPGSGLQVVYTSLEPLVHKYVRDLRAPQDGYSGTIQKWQDMVVFVRLMTKEHAELLTDNVADSWMLVPVVLCFFTPSFITNMGCVYAGLVVPSFNSIKTVGRSRSSSTAADISDGWAALATSAGSARVRWLTYWVAYGGWWHVSWQLGGLLRILPFATHAQLALLLWLQVPVFRGGGRILDFGERCMERWAQGGVVDASTEAPSRSPRSQ 1737
M DEG A VC+ GS LLALRTLV ELLSIE+PSLKE + FQAAFE+SWHSL+AW +V+TL LSPVLQFLA LARAVWPHAQ AA + +YQASLP ST+ EAAAVV +A LLRRFIVRQRY+PRA+RRVR FRAR+ Y SF+ + ERN RLSARAFPHV YWTAA SFAW+AP LR+ F VF TA WPTLY +YL LL+RSQ D D+ G+ XXXXXXXXXXXXXXXXX AR+ L RGA VMPQDVDRVLMYWVVFTV + LL A+ E F P+VR++AFFLALWMHLPGPGSGLQVVY LEPLVH YV+DLR PQ+GY+GT+++ QD++V VRL+T+E AELL DN+ DSWMLVP + F TPSF+T + C+YAGLV+PSFNSIKT+GR RS+++A +S WAALATSA SARVRWLTYWVAYG WWH+S LGG+LR+LP A HA+LALLLWLQVP+FRGGGRILDFGERCM+RW G V ++ P P+ Q
Sbjct: 1 MVDEGGADVCEKIEGS---EVLLALRTLVKELLSIEVPSLKEFVLAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITVCKYQASLPASTLCAEAAAVVLFIALVLLRRFIVRQRYIPRARRRVRNFRARINTAYMSFTASVERNLRLSARAFPHVVYWTAAASFAWLAPDLTGSLRDKFWVFATATWPTLYAVYLVLLVRSQNAVNDEDSAGGSSVNGTPAGAGTRGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSG-----------------LARGAGVMPQDVDRVLMYWVVFTVARCWGLL--AAYVPETFFTPYVRTVAFFLALWMHLPGPGSGLQVVYAWLEPLVHTYVKDLRMPQNGYTGTLKRVQDLLVLVRLLTEEKAELLVDNITDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKTLGR-RSNTSA--VSTAWAALATSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPLFRGGGRILDFGERCMDRWTFGSDVASTPVRPLTPPQQQ 540
BLAST of mRNA_S-firma_F_contig1050.704.1 vs. uniprot
Match: A0A835ZEP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP2_9STRA) HSP 1 Score: 222 bits (565), Expect = 4.880e-59 Identity = 164/521 (31.48%), Postives = 250/521 (47.98%), Query Frame = 1
Query: 214 SWHSLTAWAAVVTLVLSPVLQFLAALARAVWPHAQGAATALFQYQASLPLSTVLTEAAAVVFVVAAFLLRRFIVRQRYLPRAQRRVRRFRARLGRGYAS-------FSKAAERNFRLSARAFPHVAYWTAAGSFAWIAPGPAAWLRENFS-VFVTAAWPTLYGLYLTLLLRSQDPDAPNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAPTPVRTPMARTSTSXXGXXTPARSPGAAALGRGARVMPQDVDRVLMYWVVFTVVK----VVSLLPLASTAVEFFGRPF---VRSIAFFLALWMHLPGPGSGLQVVYTSLEPLVHKYVRDLRAPQDGYSGTIQKWQD---MVVFVRLMTKEHAELLTDNVADSWMLVPVVLCFFTPSFITNMGCVYAGLVVPSFNSIKTVGRSRSSSTAADISDGWAALATSAGSARVRWLTYWVAYGGWWHVSWQLGGLLRILPFATHAQLALLLWLQVPVFRGGGRILDFGERCMERWAQGGVVDASTEAPSR 1722
+W SL W + L+L P + A+ +WP + A L ++Q + L+ +L EAA + VVA LLRR+++R R LPRAQ + RA + + + S ++ + +L+A+ PH+ YW A + A + P A L + FVT WP L + L R + +P+ A RA TP XX XX A+ G G ++VD LMYW+VF + + V+ L+P V G + +R +W+ LPG G+ + Y +EPL+H+Y+R +R P G + + + ++ +V +R++++E A ++ +N+ADSWML+P L F+P F+ GC+YAGL+VP+ NS K + + + S G AR RWLTYW +G +W+ L LL LPFA HAQLALLLWLQ+PVFRG +L E + ++ GG A +R
Sbjct: 95 TWKSLVGWLRLAHLILKPFIGIANAIGMEIWPFVRAAGVGLARWQVTRSLTFILLEAALIGAVVAMLLLRRYMIRNRLLPRAQSWIEAKRALVRQRHDSAKAAFQQLQRSVAKKSKLAAQMLPHMLYWAVAAAAALLLPAHMAALSLGPAWEFVTVGWPILTTIMLARG-RKRSGASPSAALDEGVKGGARPSI---------------------RAGTPSGKGKRGAXXXXXXXXQVAKPKGEEEPGG------RNVDEALMYWIVFALAQCCAYVLGLVPGVGRLVLSTGTGWGLQLRMWTMLAGIWLQLPGSAGGIHMAYALIEPLIHEYIRAVRPP--GGADAVARSKNGLSFLVTLRILSQERASMIAENIADSWMLLPTPLLVFSPGFVVRGGCMYAGLLVPAINSAKALAHRNT------------LIDNSQGGARTRWLTYWAVFGMYWYFQIALASLLAWLPFANHAQLALLLWLQLPVFRGSYYVLAKIESALVAFSLGGTASPGAAARAR 573
BLAST of mRNA_S-firma_F_contig1050.704.1 vs. uniprot
Match: A0A6H5K644_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K644_9PHAE) HSP 1 Score: 142 bits (357), Expect = 1.070e-35 Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 1
Query: 1399 KTVGRSRSSSTAADISDGWAALATSAGSARVRWLTYWVAYGGWWHVSWQLGGLLRILPFATHAQLALLLWLQVPVFRGGGRILDFGERCMERWAQGGVVDASTEAP 1716
KT+GR RS+++A +S WAALATSA ARVRWLTYWVAYG WWH+S +GG+LR+LP A HA+LALLLWLQVP+FRGG RILDFGERCM+RW G V ++ P
Sbjct: 30 KTLGR-RSNNSA--VSTAWAALATSANIARVRWLTYWVAYGSWWHLSLCVGGILRVLPLAAHAELALLLWLQVPLFRGGDRILDFGERCMDRWTFGSDVASTPVRP 132
BLAST of mRNA_S-firma_F_contig1050.704.1 vs. uniprot
Match: A0A7S2V8D4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8D4_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.220e-26 Identity = 77/227 (33.92%), Postives = 116/227 (51.10%), Query Frame = 1
Query: 973 LMYWVVFTVVKVVSLLPLASTAVEFFGRPFVRSIAFFLALWMHLPGPGSGLQVVYTSLEPLVHKYVRDLRAP--QDGYSGTIQKWQDMVVFVRLMTKEHAELLTDNVADSWMLVPVVLCFFTPSFITNMGCVYAGLVVPSFNSIKTVGRSRSSSTAADISDGWAALATSAGSARVRWLTYWVAYGGWWHVSWQLGGLLRILPFATHAQLALLLWLQVPVFRGGGRIL 1647
LMYWV+F + + L ++ A P + FF +WM LP G+ +++ LEPL+ KY++D++ P ++ G ++ + V + L++KE L N+ DSW+LVP +L PS T +YAG VP+FNSIK++ A G + RWL YW+ Y +W V L L +PF H L L++WLQ+P FRG RI+
Sbjct: 11 LMYWVLFAAFVLCNYL-WSTFAWRLPQMPCGAEMVFFFFVWMQLPF--GGVSILFHQLEPLIRKYIKDIKRPIGKEESLGYLK----VAVTLGLISKERGHALVSNLLDSWLLVPALLGLTMPSPFTYAFSLYAGAAVPAFNSIKSL------------------KAEQEGPNQERWLRYWMCYAPFWVVHLALDSHLWFVPFLYHFWLLLVMWLQLPYFRGAQRIV 212
BLAST of mRNA_S-firma_F_contig1050.704.1 vs. uniprot
Match: A0A7S2R5J1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5J1_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 7.570e-13 Identity = 67/233 (28.76%), Postives = 106/233 (45.49%), Query Frame = 1
Query: 973 LMYWVVFTVVKVVSLL----PLASTAVEFFG-RPFVRSIAFFLALWMHLPGPGSGLQVVYTSLEPLVHKYVRDLRAPQDGYSGTIQKWQDMVVFVRLMTKEHAELLTDNVADSWMLVPVVLCFFTPSFITNMGCVYAGLVVPSFNSIKTVGRSRSSSTAADISDGWAALATSAGSARVRWLTYWVAYGGWW--HVSWQLGGLLRILPFATHAQLALLLWLQVPVFRGGGRILD 1650
LM+WVVF V L PL S FF +VR+ F +W+ LP GLQ+ Y + P V + V P I M+V+ ++++E + + + D W+L+ + F+ F+T +GC+ AGL P+ S K +G A + ++VRWL YW Y + +S + G+ R + F H L +++LQ+P FRG + D
Sbjct: 261 LMFWVVFAFVIAFHRLTVGFPLVSRIASFFTYHRWVRASYAFFLIWLQLPI--GGLQLAYDFIVPAVEQRVGQFSTPVSSEQRNIVF--RMLVYTGVLSQETSLRIQEVSRDGWILLALAF-LFSAGFMTEVGCLLAGLCYPAMCSAKLLG---------------AVMERVFIESQVRWLKYWAVYAVTFCFGLSIEAAGIWRWVLFGNHVHLVFIVYLQLPYFRGALLLYD 473
BLAST of mRNA_S-firma_F_contig1050.704.1 vs. uniprot
Match: A0A7S3LQR1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LQR1_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 7.840e-13 Identity = 72/251 (28.69%), Postives = 103/251 (41.04%), Query Frame = 1
Query: 973 LMYWVVFTVVKVVSLLPLASTAVEFFGRPFVRSIAFFLALWMHLPGPGSGLQVVYTSLEPLVHKYVRDLRAPQDGYSGTIQKWQDMVVFVRLMTKEHAELLTDNVADSW--MLVPVVLCFFTPSFITNMGCVYAGLVVPSFNSI-------KTVGRSRSSSTAAD--------------ISDGWAALATSAGSARVRWLTYWVAYGGWWHVSWQLGGLLRILPFATHAQLALLLWLQVPVFRGGGRILDFG 1656
L YW + +V V LP+ + P + +LW+ +PG SG + + + PLV KY + + P G S T Q + +VF +L E VA++ +L + F PS T +GCV GL P ++ I K ++R S D + G +A +WL YWV Y + V L PF QL L+LWLQ+P FRG RI G
Sbjct: 404 LRYWTILSVALVGEQLPIIGHIIRLL--PVWPAARLIFSLWLQVPGT-SGADLAFEFVVPLVAKYWKRIDLP--GPSSTTQNFALNMVFSQLPVSEETRTKMTEVAETGGTLLFTTLPLLFMPSIFTTIGCVVVGLGKPMYSGIVAVLAVEKAAQKARRSLNKKDNRNKRSSVNRLLRHVPGGGDMGVAAAALHCTQWLEYWVVYTSFMFVHGLASVFLFWFPFWVQMQLLLILWLQLPYFRGSRRIFKTG 649
BLAST of mRNA_S-firma_F_contig1050.704.1 vs. uniprot
Match: R1BSC6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BSC6_EMIHU) HSP 1 Score: 63.2 bits (152), Expect = 1.020e-6 Identity = 62/227 (27.31%), Postives = 101/227 (44.49%), Query Frame = 1
Query: 973 LMYWVVFTVVKVVS----LLPLASTAVEF----FGRPFVRSIAFFLALWMHLPGPGSGLQVVYTSLEPLVHKYVRDLRAPQDGYSGTIQKWQDMVVFVRLMTKEHAELLTDNVADSWMLVPVVLCFFTPSFITNMGCVYAGLVVPSFNSIKTVGRSRSSSTAADISDGWAALATSAGSARVRWLTYWVAYGGWWHVSWQLGGLLRILPFATHAQLALLLWLQVPVFR 1629
LM+WV++ +++S LLP A+ + P + F A W+HLP SGL ++Y+ + P++ + Q+ D + + L + W+L+ LC TP +T +Y + P+ S++ + R G A A +A + +V+ L YW+ + V QL LL LPF+TH QL L +WLQ+P FR
Sbjct: 210 LMFWVLWASAQLLSEALALLPFAARLLPAQALSLDSPSAAPVLFCAAAWLHLPH--SGLPLLYSLVGPVL--------------AARAQRLSDALPALPAGVSAQIGL------EGWLLLAAALCLCTPYPLTAYTLLYWSVCHPALRSVEALEAQR---------HGAEAAADAAFATQVQ-LRYWLLHCAVSAVLQQLPWLLW-LPFSTHGQLVLAVWLQLPYFR 403 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1050.704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1050.704.1 >prot_S-firma_F_contig1050.704.1 ID=prot_S-firma_F_contig1050.704.1|Name=mRNA_S-firma_F_contig1050.704.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=564bp MADEGDASVCDNPGGSVGPAALLALRTLVNELLSIELPSLKECAVTFQAAback to top mRNA from alignment at S-firma_F_contig1050:12034..16365+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1050.704.1 ID=mRNA_S-firma_F_contig1050.704.1|Name=mRNA_S-firma_F_contig1050.704.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4332bp|location=Sequence derived from alignment at S-firma_F_contig1050:12034..16365+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1050:12034..16365+ >mRNA_S-firma_F_contig1050.704.1 ID=mRNA_S-firma_F_contig1050.704.1|Name=mRNA_S-firma_F_contig1050.704.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3384bp|location=Sequence derived from alignment at S-firma_F_contig1050:12034..16365+ (Sphaerotrichia firma ET2_F female)back to top |