mRNA_S-firma_F_contig105.696.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig105.696.1 vs. uniprot
Match: A0A6H5JE26_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE26_9PHAE) HSP 1 Score: 813 bits (2100), Expect = 1.930e-277 Identity = 417/554 (75.27%), Postives = 473/554 (85.38%), Query Frame = 1
Query: 259 DEADTRAFWDLMQRTTGARSSSWATFSATFETYMRRHYADEMSQLPTATRAEAEMVLRYAFDRGNPARAAAGEQVTPTHLAKFLKRFGPMRSCLLKAARSLFDTSGCLVPWFHGQTSREEAVFAIEEWEASRREGRQQRGVFLFRYSDRQPTISFSYRRRKGDKRIVPVLIDN-GPRGYSLRDKPD--LWRDLQDFVRKMNV-DFVYPVPSALYVECKEEIELRRRAEQFSPTPENQISHARQLYAEAQALVI---RPLDTGVEATRILERALGFVRQVEFILGQLEE--GEPQLQVKALRLGGDILWKLHREEEGVTSYLRCLNVISEAEKLQDAVHEDSPVVTASVLSHLHQLLAEYFLQQGPPGRGLDHFSELMACTTNEDARRQLVNEFRRTDDFHRATAGLTHSNVEAMLDEGISYFRNQDYGPAGEKFKKVLRDARCIGEGKLEARALGNLATVDYKTHLIPAAIRRYKTCVQLLRQQGDQVTERKILNYLVMCCIEAQRWAPANLFHEQLSKLAESEQNIRHLARLKGLIEDGMALQAAQHEGAAPS 1893
DEADTRAFWDL+QRTTGARS+SW TFSATFETY+RRHYA EMSQLP ATRAEAEMVLRYAFDRG+PARAAAGE+V P HLA FL RFGPM+SCL+KAARSLFD SGCLVPWFHG+ SREEA AIEEWEASR GR+QRGVFLFRYSD TI FS+RR+KG++R+V LI+N G RGY+L D WRDL++FV + DF +PVPSAL+ EC EEIE RRRAEQF PTPENQI+HARQL+ +AQ +V R + G EATRILE ALG V +VE IL +LE+ G+PQLQ KALRLGGDILWKLHREEEGV SYLRCL+V+SEAEK+ DA H+ SPVVT SVLSH+HQLLAEYFL +G RGLDHFSEL+ACTT+EDAR+QLV++FRR D F RATAGLT S+V+ +LDEGISYFR QDYGPAG +F+KVLR+ARCIGEG++EARALGNLATVDYKTH IPAAIRRY+TCVQLLRQQG+QVTERKILNYLVMCCIEAQRWAPA LFHEQLSKLAESE+N+ HLARL+ IE+GMALQA Q AAP+
Sbjct: 4 DEADTRAFWDLVQRTTGARSASWDTFSATFETYLRRHYAAEMSQLPRATRAEAEMVLRYAFDRGSPARAAAGERVAPKHLALFLTRFGPMKSCLIKAARSLFDESGCLVPWFHGKLSREEARRAIEEWEASRGNGREQRGVFLFRYSDWHSTICFSFRRKKGERRLVTCLINNEGRRGYTLPDTSGDGCWRDLREFVAEQRRGDFRHPVPSALHRECVEEIEARRRAEQFVPTPENQIAHARQLFGDAQTMVYSRDRDMKAGFEATRILEGALGLVEKVEHILRELEQDQGDPQLQAKALRLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLSHIHQLLAEYFLSRGWHERGLDHFSELVACTTDEDARQQLVDDFRRNDGFRRATAGLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRNARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEENVLHLARLQERIEEGMALQARQEGDAAPA 557
BLAST of mRNA_S-firma_F_contig105.696.1 vs. uniprot
Match: D8LBM4_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM4_ECTSI) HSP 1 Score: 811 bits (2094), Expect = 5.960e-276 Identity = 416/552 (75.36%), Postives = 470/552 (85.14%), Query Frame = 1
Query: 259 DEADTRAFWDLMQRTTGARSSSWATFSATFETYMRRHYADEMSQLPTATRAEAEMVLRYAFDRGNPARAAAGEQVTPTHLAKFLKRFGPMRSCLLKAARSLFDTSGCLVPWFHGQTSREEAVFAIEEWEASRREGRQQRGVFLFRYSDRQPTISFSYRRRKGDKRIVPVLIDN-GPRGYSLRDKPD--LWRDLQDFVRKMNV-DFVYPVPSALYVECKEEIELRRRAEQFSPTPENQISHARQLYAEAQALVI-RPLDTGVEATRILERALGFVRQVEFILGQLEEGE--PQLQVKALRLGGDILWKLHREEEGVTSYLRCLNVISEAEKLQDAVHEDSPVVTASVLSHLHQLLAEYFLQQGPPGRGLDHFSELMACTTNEDARRQLVNEFRRTDDFHRATAGLTHSNVEAMLDEGISYFRNQDYGPAGEKFKKVLRDARCIGEGKLEARALGNLATVDYKTHLIPAAIRRYKTCVQLLRQQGDQVTERKILNYLVMCCIEAQRWAPANLFHEQLSKLAESEQNIRHLARLKGLIEDGMALQAAQHEGAAPS 1893
DEADTRAFWDLMQRTTGARS+SW TFSATFETY+RR+YA EMSQLP ATRAEAEMVLRYAFDRG+PARAAAGE+V P HLA FL RFGPMRSCL+KAARSLFD SGCLVPWFHG+ SR+EA AIEEWEASR GR+QRGVFLFRYSD TI FS+RR++G++R+V LI+N G RGY+L D WRDL++FV + DF PVPSAL+ EC EEIE RRRAEQF PTPENQI++ARQL+ EAQ +V R + G EATRIL+ ALG V +VE IL +LE+G+ PQLQ KALRLGGDILWKLHREE+GV SYLRCLNV+SEAEK+Q A SPVVT SVLSH+HQLLAEYFL +G PGRGLDHFSEL+ACTT+EDARRQLV++FRR D F RATAGLT S+V+ +LDEGISYFR QDYGPAG +F+KVLRDARCIGEG++EARALGNLATVDYKTH IPAAIRRY+TCVQLLRQQG+Q TERKILNYLVMCCIEAQRWAPA LFHEQLSKLAESEQN++ L RL+ IE+GMALQA Q AAP+
Sbjct: 4 DEADTRAFWDLMQRTTGARSASWDTFSATFETYLRRYYAAEMSQLPRATRAEAEMVLRYAFDRGSPARAAAGERVAPKHLALFLTRFGPMRSCLIKAARSLFDESGCLVPWFHGKLSRDEARRAIEEWEASRGNGREQRGVFLFRYSDWHSTICFSFRRKRGERRLVTCLINNEGSRGYTLPDTSGDGCWRDLREFVAEQRRGDFQQPVPSALHRECVEEIEARRRAEQFVPTPENQIAYARQLFGEAQTMVYSRDMKAGFEATRILQEALGLVEKVEHILLELEQGQGDPQLQAKALRLGGDILWKLHREEKGVASYLRCLNVVSEAEKVQGASDHGSPVVTISVLSHVHQLLAEYFLSRGSPGRGLDHFSELVACTTDEDARRQLVDDFRRNDGFQRATAGLTQSSVQEILDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQATERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQERIEEGMALQARQEGDAAPA 555
BLAST of mRNA_S-firma_F_contig105.696.1 vs. uniprot
Match: K8YX09_NANGC (Tpr domain-containing protein (Fragment) n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YX09_NANGC) HSP 1 Score: 99.8 bits (247), Expect = 1.600e-18 Identity = 74/259 (28.57%), Postives = 130/259 (50.19%), Query Frame = 1
Query: 1105 EPQLQVKALRLGGDILWKLHREEEGVTSYLRCLNVISEAEKLQDAVHEDSPVVTASVLSHLHQLLAEYFLQQGPPGRGLDHFSELMACTTNEDARRQLVNEFRRTDDFHRATAGLTHSNVEAMLDEGISYFRNQDYGPAGEKFKKVLRDARCI----GEGK--LEARALGNLATVDYKTHLIPAAIRRYKTCVQLLRQQGDQVTERKILNYLVMCCIEAQRWAPANLFHEQLSKLAESEQNIR----HLARLKGLIEDG 1851
E ++Q +A ++ G +L ++ +E Y L+V + LQ A + L ++H LA+++L L+HF +L+A T + RR+L+ EF R H +T ++ L++G ++R + + A +F++V++ AR G+G +EARALGN ATV +I Y+ C +LL + ++ ER++LN L + IEA R+ A + E+L L E + N+ L ++ + DG
Sbjct: 103 EARMQARAAKVKGTVLQEMGLMKEASVWYE--LSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGDRRRLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDG 359
BLAST of mRNA_S-firma_F_contig105.696.1 vs. uniprot
Match: A0A4D9CYM5_9STRA (SH2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYM5_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.590e-17 Identity = 75/268 (27.99%), Postives = 131/268 (48.88%), Query Frame = 1
Query: 1105 EPQLQVKALRLGGDILWKLHREEEGVTSYLRCLNVISEAEKLQDAVHEDSPVVTASVLSHLHQLLAEYFLQQGPPGRGLDHFSELMACTTNEDARRQLVNEFRRTDDFHRATAGLTHSNVEAMLDEGISYFRNQDYGPAGEKFKKVLRDARCI----GEGK--LEARALGNLATVDYKTHLIPAAIRRYKTCVQLLRQQGDQVTERKILNYLVMCCIEAQRWAPANLFHEQLSKLAESEQNI----RHLARLKGLIEDGMALQAAQHE 1878
E ++Q +A ++ G +L ++ +E Y L+V + LQ A + L ++H LA+++L L+HF +L+A T + RR L+ EF R H +T ++ L++G ++R + + A +F++V++ AR G+G +EARALGN ATV +I Y+ C +LL + ++ ER++LN L + IEA R+ A + E+L L E + N+ L ++ + DG + E
Sbjct: 538 EARMQARAAKVKGTVLQEMGLMKEASVWYE--LSVRAGRRLLQQAPLSEDLSKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDVGDRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVGLVKTRLEEIQACLRDGRRTMERESE 803 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig105.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig105.696.1 >prot_S-firma_F_contig105.696.1 ID=prot_S-firma_F_contig105.696.1|Name=mRNA_S-firma_F_contig105.696.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=875bp METSDEADTRAFWDLMQRTTGARSSSWATFSATFETYMRRHYADEMSQLPback to top mRNA from alignment at S-firma_F_contig105:9861..19061- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig105.696.1 ID=mRNA_S-firma_F_contig105.696.1|Name=mRNA_S-firma_F_contig105.696.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=9201bp|location=Sequence derived from alignment at S-firma_F_contig105:9861..19061- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig105:9861..19061- >mRNA_S-firma_F_contig105.696.1 ID=mRNA_S-firma_F_contig105.696.1|Name=mRNA_S-firma_F_contig105.696.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=5250bp|location=Sequence derived from alignment at S-firma_F_contig105:9861..19061- (Sphaerotrichia firma ET2_F female)back to top |