mRNA_S-firma_F_contig10482.680.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10482.680.1
Unique NamemRNA_S-firma_F_contig10482.680.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10482.680.1 vs. uniprot
Match: D8LCY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCY0_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 2.900e-51
Identity = 92/110 (83.64%), Postives = 99/110 (90.00%), Query Frame = 1 
Query:  172 MLEGTVLHKRRSGSGARGDGDVVGISWKAPTRSHPSPSLVVTCAHQVVVYKPGEERRTHQWSFKPSAATVLSHAAVFLPAASRYVGVQQGSTLVSWRESEQDVKRPLSCE 501
            MLE TVLH+ R+G   + + DVVGI+WKAPTRSHPSPSLVVTCAHQVVVYKPGEERRTHQWSFKPSAATVLSH AVFLP+ SRYVGVQQGSTLVSWRESEQDVK PLS +
Sbjct:    1 MLESTVLHQSRTGPRGQPN-DVVGINWKAPTRSHPSPSLVVTCAHQVVVYKPGEERRTHQWSFKPSAATVLSHPAVFLPSRSRYVGVQQGSTLVSWRESEQDVKHPLSSQ 109
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10482.680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCY0_ECTSI2.900e-5183.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10482contigS-firma_F_contig10482:880..1798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001470.1
Hectar predicted targeting categoryother localisation
Exons2
Model size504
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.0729458-CDS-S-firma_F_contig10482:880..10571622815583.0729458-CDS-S-firma_F_contig10482:880..1057Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10482 881..1057 -
1696949433.3611617-CDS-S-firma_F_contig10482:880..10571696949433.3611617-CDS-S-firma_F_contig10482:880..1057Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10482 881..1057 -
1622815583.0855455-CDS-S-firma_F_contig10482:1474..17981622815583.0855455-CDS-S-firma_F_contig10482:1474..1798Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10482 1475..1798 -
1696949433.3733146-CDS-S-firma_F_contig10482:1474..17981696949433.3733146-CDS-S-firma_F_contig10482:1474..1798Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10482 1475..1798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10482.680.1prot_S-firma_F_contig10482.680.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10482 881..1798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10482.680.1

>prot_S-firma_F_contig10482.680.1 ID=prot_S-firma_F_contig10482.680.1|Name=mRNA_S-firma_F_contig10482.680.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=167bp
GSPYQPDLFCAQPRERRRCQRASACFVIDAGAAGVIALACPCPPCGDREL
PLVGDERMLEGTVLHKRRSGSGARGDGDVVGISWKAPTRSHPSPSLVVTC
AHQVVVYKPGEERRTHQWSFKPSAATVLSHAAVFLPAASRYVGVQQGSTL
VSWRESEQDVKRPLSCE
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mRNA from alignment at S-firma_F_contig10482:880..1798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10482.680.1 ID=mRNA_S-firma_F_contig10482.680.1|Name=mRNA_S-firma_F_contig10482.680.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=919bp|location=Sequence derived from alignment at S-firma_F_contig10482:880..1798- (Sphaerotrichia firma ET2_F female)
GGGTCTCCGTATCAACCTGACCTTTTTTGTGCACAACCGAGAGAGAGGAG
GAGGTGTCAGCGAGCTTCCGCGTGCTTTGTGATAGACGCAGGCGCAGCAG
GCGTGATTGCCCTTGCTTGCCCTTGCCCCCCCTGTGGCGACCGCGAGTTA
CCGCTGGTAGGCGACGAGAGGATGCTGGAAGGCACGGTCCTTCACAAGCG
CCGCAGCGGCAGTGGTGCTAGGGGAGACGGCGATGTGGTGGGCATCTCGT
GGAAAGCGCCCACGAGGTCTCACCCCAGCCCTTCCCTGGTGGTGACCTGC
GCGCATCAAGTGGTCGTCTACAAGGTGCGTACGCATACGGCGTGGTGTGT
TTTTTCCCGGAGCCTGATACATGGTGTGATCATAGACCTACTGCTGTAGC
TGCAGCAGCAAAAACAAAAAAAACACTTGCTGTCTGTGTCGATTTGTCTC
CAAAAAAATCGGTGGGTAGGAGAGAGCAGCAGCAGCAGCAGCAGCAGGCT
GACATGTTTAATATTTTCAGCGCCGCTCTTTTGCGAACGCCCCAGGAGCC
AGCGTCATCTGCGCAAGCTCCTTGGCTCGCTAGCCGCCTGATCTCTTTTC
CCTCCTGTTCTCCGGCTCTCCCAACCCTTTTGAATATTTTGGACGTGTGG
TCCTGAAAATCGAAAAACACCGTGAATCCTTGACCACGGGACTGCTCCTT
CTGCGTGCTGTGTGTGTTTGCGTGCTGCTCTGGCTGCTCAGCCCGGCGAG
GAGAGGAGGACGCACCAATGGTCGTTTAAGCCCTCGGCGGCGACTGTGCT
CTCGCACGCGGCGGTCTTCCTGCCGGCGGCCTCGCGCTACGTGGGCGTGC
AGCAGGGGTCCACCCTCGTGAGCTGGCGAGAGAGCGAGCAGGATGTCAAG
CGTCCCCTCTCATGCGAGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10482:880..1798-

>mRNA_S-firma_F_contig10482.680.1 ID=mRNA_S-firma_F_contig10482.680.1|Name=mRNA_S-firma_F_contig10482.680.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1002bp|location=Sequence derived from alignment at S-firma_F_contig10482:880..1798- (Sphaerotrichia firma ET2_F female)
GGGTCTCCGTATCAACCTGACCTTTTTTGTGCACAACCGAGAGAGAGGAG
GAGGTGTCAGCGAGCTTCCGCGTGCTTTGTGATAGACGCAGGCGCAGCAG
GCGTGATTGCCCTTGCTTGCCCTTGCCCCCCCTGTGGCGACCGCGAGTTA
CCGCTGGTAGGCGACGAGAGGATGCTGGAAGGCACGGTCCTTCACAAGCG
CCGCAGCGGCAGTGGTGCTAGGGGAGACGGCGATGTGGTGGGCATCTCGT
GGAAAGCGCCCACGAGGTCTCACCCCAGCCCTTCCCTGGTGGTGACCTGC
GCGCATCAAGTGGTCGTCTACAAGGGGTCTCCGTATCAACCTGACCTTTT
TTGTGCACAACCGAGAGAGAGGAGGAGGTGTCAGCGAGCTTCCGCGTGCT
TTGTGATAGACGCAGGCGCAGCAGGCGTGATTGCCCTTGCTTGCCCTTGC
CCCCCCTGTGGCGACCGCGAGTTACCGCTGGTAGGCGACGAGAGGATGCT
GGAAGGCACGGTCCTTCACAAGCGCCGCAGCGGCAGTGGTGCTAGGGGAG
ACGGCGATGTGGTGGGCATCTCGTGGAAAGCGCCCACGAGGTCTCACCCC
AGCCCTTCCCTGGTGGTGACCTGCGCGCATCAAGTGGTCGTCTACAAGCC
CGGCGAGGAGAGGAGGACGCACCAATGGTCGTTTAAGCCCTCGGCGGCGA
CTGTGCTCTCGCACGCGGCGGTCTTCCTGCCGGCGGCCTCGCGCTACGTG
GGCGTGCAGCAGGGGTCCACCCTCGTGAGCTGGCGAGAGAGCGAGCAGGA
TGTCAAGCGTCCCCTCTCATGCGAGCCCGGCGAGGAGAGGAGGACGCACC
AATGGTCGTTTAAGCCCTCGGCGGCGACTGTGCTCTCGCACGCGGCGGTC
TTCCTGCCGGCGGCCTCGCGCTACGTGGGCGTGCAGCAGGGGTCCACCCT
CGTGAGCTGGCGAGAGAGCGAGCAGGATGTCAAGCGTCCCCTCTCATGCG
AG
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